Wall clock time and date at job start Tue Mar 31 2020 15:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.58584 * 2 1 4 4 C 1.53194 * 109.57971 * 120.27863 * 2 1 3 5 5 C 1.53045 * 109.30928 * 174.42060 * 4 2 1 6 6 C 1.53040 * 109.53945 * 298.63715 * 5 4 2 7 7 H 1.08997 * 109.49691 * 301.41526 * 6 5 4 8 8 N 1.46499 * 109.49726 * 181.31703 * 6 5 4 9 9 C 1.34775 * 120.00012 * 155.00552 * 8 6 5 10 10 O 1.21288 * 119.99999 * 359.97438 * 9 8 6 11 11 C 1.50705 * 120.00212 * 179.97438 * 9 8 6 12 12 C 1.53000 * 109.47153 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47166 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47289 * 295.00439 * 13 12 11 15 15 C 1.53001 * 109.47088 * 179.97438 * 14 13 12 16 16 C 1.52999 * 109.46755 * 60.00117 * 15 14 13 17 17 C 1.53000 * 109.47226 * 299.99798 * 16 15 14 18 18 C 1.52994 * 109.47305 * 60.00286 * 17 16 15 19 19 C 1.53192 * 109.31267 * 61.36448 * 6 5 4 20 20 N 1.46918 * 109.58726 * 239.71300 * 2 1 3 21 21 C 1.36939 * 120.63097 * 6.60063 * 20 2 1 22 22 H 1.07998 * 120.00499 * 331.65902 * 21 20 2 23 23 C 1.38810 * 119.99920 * 151.65058 * 21 20 2 24 24 N 1.31616 * 120.00488 * 160.60326 * 23 21 20 25 25 Si 1.86808 * 120.00031 * 340.60519 * 23 21 20 26 26 H 1.48503 * 109.46669 * 94.81655 * 25 23 21 27 27 H 1.48490 * 109.47106 * 214.81588 * 25 23 21 28 28 H 1.48502 * 109.47048 * 334.82036 * 25 23 21 29 29 H 1.09007 * 109.47392 * 300.00820 * 1 2 3 30 30 H 1.08997 * 109.47387 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47188 * 59.99994 * 1 2 3 32 32 H 1.08996 * 109.50479 * 294.37079 * 4 2 1 33 33 H 1.08996 * 109.50078 * 54.44344 * 4 2 1 34 34 H 1.09005 * 109.46118 * 58.65700 * 5 4 2 35 35 H 1.08995 * 109.46327 * 178.62774 * 5 4 2 36 36 H 0.96995 * 120.00392 * 334.99389 * 8 6 5 37 37 H 1.08996 * 109.46775 * 299.99677 * 11 9 8 38 38 H 1.09001 * 109.46909 * 59.99886 * 11 9 8 39 39 H 1.08993 * 109.47016 * 300.00341 * 12 11 9 40 40 H 1.09000 * 109.46891 * 59.99974 * 12 11 9 41 41 H 1.09008 * 109.46778 * 55.00613 * 13 12 11 42 42 H 1.08993 * 109.46889 * 299.99970 * 14 13 12 43 43 H 1.09005 * 109.47243 * 59.99718 * 14 13 12 44 44 H 1.09000 * 109.47003 * 300.00165 * 15 14 13 45 45 H 1.08995 * 109.47105 * 180.02562 * 15 14 13 46 46 H 1.08999 * 109.47034 * 180.02562 * 16 15 14 47 47 H 1.09000 * 109.47524 * 59.99730 * 16 15 14 48 48 H 1.09007 * 109.46833 * 300.00014 * 17 16 15 49 49 H 1.09005 * 109.47243 * 180.02562 * 17 16 15 50 50 H 1.08996 * 109.47500 * 180.02562 * 18 17 16 51 51 H 1.08994 * 109.47105 * 59.99547 * 18 17 16 52 52 H 1.09001 * 109.58777 * 65.15335 * 19 6 5 53 53 H 1.09002 * 109.59065 * 185.58013 * 19 6 5 54 54 H 0.96996 * 120.00485 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7277 1.2465 5 6 3.5674 -0.8465 1.1714 6 6 3.9568 -1.6659 -0.0611 7 1 3.4982 -2.6529 -0.0016 8 7 5.4142 -1.8056 -0.1149 9 6 5.9676 -2.8493 -0.7637 10 8 5.2591 -3.6730 -1.3027 11 6 7.4667 -2.9928 -0.8195 12 6 7.8295 -4.2522 -1.6089 13 6 9.3515 -4.3975 -1.6661 14 6 9.9452 -3.2347 -2.4638 15 6 11.4673 -3.3798 -2.5204 16 6 11.8286 -4.7019 -3.2004 17 6 11.2348 -5.8646 -2.4028 18 6 9.7128 -5.7196 -2.3461 19 6 3.4651 -0.9488 -1.3223 20 7 2.0225 -0.6981 -1.1952 21 6 1.1537 -1.1105 -2.1700 22 1 0.1330 -1.3549 -1.9155 23 6 1.5848 -1.2144 -3.4854 24 7 0.9103 -1.9505 -4.3429 25 14 3.1225 -0.3092 -4.0385 26 1 4.2915 -1.2210 -3.9520 27 1 2.9517 0.1448 -5.4419 28 1 3.3467 0.8677 -3.1611 29 1 -0.3634 0.5140 0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 1.7659 -0.1641 2.1371 33 1 1.6024 -1.7234 1.2940 34 1 4.0061 0.1487 1.0993 35 1 3.9376 -1.3424 2.0686 36 1 5.9808 -1.1470 0.3163 37 1 7.8972 -2.1197 -1.3098 38 1 7.8620 -3.0727 0.1932 39 1 7.3989 -5.1251 -1.1183 40 1 7.4341 -4.1727 -2.6216 41 1 9.7557 -4.3877 -0.6538 42 1 9.5410 -3.2447 -3.4759 43 1 9.6881 -2.2928 -1.9791 44 1 11.8712 -3.3697 -1.5080 45 1 11.8903 -2.5512 -3.0882 46 1 12.9129 -4.8054 -3.2404 47 1 11.4247 -4.7120 -4.2128 48 1 11.6388 -5.8545 -1.3904 49 1 11.4926 -6.8066 -2.8871 50 1 9.2898 -6.5477 -1.7775 51 1 9.3090 -5.7297 -3.3584 52 1 3.9904 0.0000 -1.4315 53 1 3.6518 -1.5747 -2.1950 54 1 1.2113 -2.0227 -5.2622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132464484.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:11 Heat of formation + Delta-G solvation = -78.875526 kcal Electronic energy + Delta-G solvation = -28568.145026 eV Core-core repulsion = 24923.589233 eV Total energy + Delta-G solvation = -3644.555793 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.13981 -39.82134 -39.23503 -36.10959 -34.81987 -34.67120 -32.61196 -32.40029 -31.63788 -30.22779 -27.86870 -26.73997 -25.32953 -24.37784 -23.45397 -22.38755 -21.82197 -21.32330 -20.75672 -20.60423 -18.54112 -18.11800 -17.58288 -16.74870 -16.62042 -16.37967 -16.16431 -15.42948 -15.31952 -15.23210 -15.07905 -14.87904 -14.74371 -14.64314 -14.43631 -14.07966 -13.80334 -13.50917 -13.44783 -13.04165 -12.97921 -12.79341 -12.70103 -12.59155 -12.50786 -12.47556 -12.09396 -12.04560 -11.98314 -11.77858 -11.68833 -11.68612 -11.42210 -11.32590 -11.30952 -10.98025 -10.80849 -10.78479 -10.74800 -10.12464 -8.88875 -8.18561 -5.49418 1.23597 1.27730 1.37818 1.67310 2.19251 2.38594 3.05176 3.32526 3.69152 3.73289 3.79152 3.83429 3.98140 4.02679 4.10459 4.13658 4.21344 4.26158 4.38918 4.40933 4.47182 4.58002 4.58352 4.60677 4.66446 4.66534 4.67999 4.75885 4.81084 4.82681 4.85861 4.98202 4.98598 4.99852 5.08922 5.12141 5.15740 5.18078 5.23240 5.26394 5.28496 5.33899 5.36808 5.42748 5.48617 5.49688 5.51750 5.63734 5.64456 5.88995 6.15938 6.62573 6.91325 7.36111 7.63554 8.02215 9.01168 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.016261 B = 0.003029 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.502535 B = 9241.049073 C =10178.558721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.157 3.843 3 H 0.047 0.953 4 C -0.121 4.121 5 C -0.106 4.106 6 C 0.135 3.865 7 H 0.049 0.951 8 N -0.713 5.713 9 C 0.494 3.506 10 O -0.594 6.594 11 C -0.128 4.128 12 C -0.099 4.099 13 C -0.075 4.075 14 C -0.121 4.121 15 C -0.116 4.116 16 C -0.123 4.123 17 C -0.115 4.115 18 C -0.119 4.119 19 C 0.121 3.879 20 N -0.615 5.615 21 C -0.235 4.235 22 H 0.067 0.933 23 C -0.039 4.039 24 N -0.959 5.959 25 Si 0.942 3.058 26 H -0.301 1.301 27 H -0.310 1.310 28 H -0.249 1.249 29 H 0.085 0.915 30 H 0.035 0.965 31 H 0.038 0.962 32 H 0.103 0.897 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.419 0.581 37 H 0.114 0.886 38 H 0.130 0.870 39 H 0.054 0.946 40 H 0.036 0.964 41 H 0.090 0.910 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.049 0.951 48 H 0.071 0.929 49 H 0.062 0.938 50 H 0.060 0.940 51 H 0.045 0.955 52 H 0.035 0.965 53 H 0.030 0.970 54 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.258 1.271 14.167 27.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.053 3.947 3 H 0.065 0.935 4 C -0.161 4.161 5 C -0.144 4.144 6 C 0.028 3.972 7 H 0.068 0.932 8 N -0.366 5.366 9 C 0.283 3.717 10 O -0.474 6.474 11 C -0.167 4.167 12 C -0.137 4.137 13 C -0.094 4.094 14 C -0.158 4.158 15 C -0.153 4.153 16 C -0.160 4.160 17 C -0.152 4.152 18 C -0.157 4.157 19 C -0.006 4.006 20 N -0.340 5.340 21 C -0.365 4.365 22 H 0.085 0.915 23 C -0.233 4.233 24 N -0.606 5.606 25 Si 0.772 3.228 26 H -0.230 1.230 27 H -0.239 1.239 28 H -0.173 1.173 29 H 0.104 0.896 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.122 0.878 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.256 0.744 37 H 0.132 0.868 38 H 0.148 0.852 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.108 0.892 42 H 0.062 0.938 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.068 0.932 48 H 0.090 0.910 49 H 0.081 0.919 50 H 0.079 0.921 51 H 0.064 0.936 52 H 0.053 0.947 53 H 0.048 0.952 54 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 22.720 0.680 13.666 26.522 hybrid contribution 0.136 0.061 -1.369 1.377 sum 22.856 0.741 12.297 25.964 Atomic orbital electron populations 1.21767 0.94997 1.00856 1.01344 1.20888 0.94178 0.94129 0.85553 0.93487 1.21977 0.94892 1.00826 0.98368 1.21662 0.96730 1.00412 0.95552 1.21319 0.80172 0.99078 0.96663 0.93246 1.45983 1.07175 1.27474 1.55986 1.21760 0.92748 0.80402 0.76840 1.90756 1.65608 1.44236 1.46844 1.21779 0.88561 1.01339 1.05007 1.21352 0.96350 0.96793 0.99248 1.21117 0.92671 0.95096 1.00499 1.21698 0.96046 0.98387 0.99707 1.21517 0.95051 0.97272 1.01477 1.21567 1.00645 0.94944 0.98847 1.21506 0.94383 0.98325 1.01009 1.21604 0.96764 0.97171 1.00163 1.21631 0.85083 0.96743 0.97103 1.44586 1.01800 1.66419 1.21192 1.18925 0.94984 1.35982 0.86584 0.91496 1.25906 1.00595 1.00319 0.96510 1.69945 1.43679 1.41924 1.05079 0.85953 0.80363 0.80131 0.76312 1.23000 1.23924 1.17317 0.89629 0.94541 0.94304 0.87847 0.93513 0.89562 0.89157 0.74381 0.86840 0.85187 0.92719 0.94541 0.89174 0.93752 0.90708 0.90831 0.91759 0.91129 0.93168 0.91008 0.91941 0.92149 0.93606 0.94691 0.95200 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 7.94 71.98 0.57 -4.15 16 2 C 0.16 5.74 3.49 44.98 0.16 5.90 16 3 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 4 C -0.12 -3.42 5.37 30.67 0.16 -3.26 16 5 C -0.11 -2.66 5.35 30.62 0.16 -2.49 16 6 C 0.13 4.78 2.61 45.07 0.12 4.90 16 7 H 0.05 2.17 7.58 -2.39 -0.02 2.16 16 8 N -0.71 -19.88 5.08 -442.16 -2.25 -22.12 16 9 C 0.49 15.98 7.80 87.66 0.68 16.67 16 10 O -0.59 -27.26 15.65 -3.06 -0.05 -27.31 16 11 C -0.13 -2.60 5.46 29.85 0.16 -2.43 16 12 C -0.10 -2.36 3.97 30.59 0.12 -2.24 16 13 C -0.08 -1.28 2.19 -10.79 -0.02 -1.30 16 14 C -0.12 -1.93 4.96 30.59 0.15 -1.78 16 15 C -0.12 -1.49 5.92 30.59 0.18 -1.30 16 16 C -0.12 -1.65 5.92 30.59 0.18 -1.47 16 17 C -0.11 -1.59 5.92 30.59 0.18 -1.41 16 18 C -0.12 -2.12 5.21 30.59 0.16 -1.96 16 19 C 0.12 5.46 3.76 86.35 0.33 5.79 16 20 N -0.61 -29.62 2.76 -675.15 -1.87 -31.48 16 21 C -0.23 -13.82 9.07 84.03 0.76 -13.06 16 22 H 0.07 4.19 6.37 -2.91 -0.02 4.18 16 23 C -0.04 -2.46 5.25 84.86 0.45 -2.02 16 24 N -0.96 -64.58 13.97 21.65 0.30 -64.28 16 25 Si 0.94 50.91 24.36 68.60 1.67 52.58 16 26 H -0.30 -16.73 6.72 99.48 0.67 -16.06 16 27 H -0.31 -16.82 7.11 99.48 0.71 -16.11 16 28 H -0.25 -12.34 6.44 99.48 0.64 -11.70 16 29 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 30 H 0.04 1.43 7.43 -2.39 -0.02 1.41 16 31 H 0.04 1.55 7.63 -2.39 -0.02 1.54 16 32 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.42 7.41 8.60 -92.71 -0.80 6.61 16 37 H 0.11 1.87 6.56 -2.39 -0.02 1.85 16 38 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 40 H 0.04 1.10 8.10 -2.39 -0.02 1.08 16 41 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.07 1.02 6.56 -2.38 -0.02 1.00 16 44 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 49 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 50 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.04 1.49 6.94 -2.39 -0.02 1.48 16 53 H 0.03 1.64 4.62 -2.39 -0.01 1.63 16 54 H 0.26 16.64 8.31 -92.71 -0.77 15.87 16 Total: -1.00 -82.86 397.49 2.27 -80.60 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -0.05 Total: 17.65 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 4.51 Total: -5.64 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -3.81 Total: -117.89 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.05 Total: -27.31 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 1.67 Total: 52.58 kcal Total: -82.86 2.27 -80.60 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132464484.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.722 kcal (2) G-P(sol) polarization free energy of solvation -82.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds