Wall clock time and date at job start Tue Mar 31 2020 15:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.58991 * 2 1 4 4 C 1.53193 * 109.58669 * 239.71598 * 2 1 3 5 5 C 1.53041 * 109.31193 * 185.57759 * 4 2 1 6 6 C 1.53038 * 109.53987 * 61.36506 * 5 4 2 7 7 H 1.08996 * 109.50146 * 178.64966 * 6 5 4 8 8 N 1.46504 * 109.50055 * 58.58253 * 6 5 4 9 9 C 1.34770 * 120.00355 * 155.00064 * 8 6 5 10 10 O 1.21283 * 119.99764 * 0.02562 * 9 8 6 11 11 C 1.50697 * 120.00142 * 180.02562 * 9 8 6 12 12 C 1.53001 * 109.47291 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47562 * 179.97438 * 12 11 9 14 14 C 1.52994 * 109.47422 * 185.00030 * 13 12 11 15 15 C 1.53001 * 109.46930 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.47091 * 60.00358 * 15 14 13 17 17 C 1.52997 * 109.47294 * 299.99677 * 16 15 14 18 18 C 1.53001 * 109.46788 * 60.00137 * 17 16 15 19 19 C 1.53197 * 109.31511 * 298.63648 * 6 5 4 20 20 N 1.46926 * 109.58661 * 120.42513 * 2 1 3 21 21 C 1.36939 * 120.63316 * 353.41767 * 20 2 1 22 22 H 1.07999 * 119.99717 * 29.01081 * 21 20 2 23 23 C 1.38810 * 120.00016 * 209.01332 * 21 20 2 24 24 N 1.31615 * 120.00241 * 15.00824 * 23 21 20 25 25 Si 1.86803 * 119.99694 * 195.01613 * 23 21 20 26 26 H 1.48496 * 109.47322 * 89.99780 * 25 23 21 27 27 H 1.48500 * 109.46886 * 209.99833 * 25 23 21 28 28 H 1.48503 * 109.47084 * 329.99577 * 25 23 21 29 29 H 1.08994 * 109.47189 * 180.28883 * 1 2 3 30 30 H 1.09009 * 109.47185 * 300.28465 * 1 2 3 31 31 H 1.08996 * 109.47062 * 60.28323 * 1 2 3 32 32 H 1.08997 * 109.49906 * 65.62613 * 4 2 1 33 33 H 1.08993 * 109.49410 * 305.52500 * 4 2 1 34 34 H 1.09006 * 109.46176 * 301.34480 * 5 4 2 35 35 H 1.09000 * 109.46373 * 181.38428 * 5 4 2 36 36 H 0.97003 * 119.99810 * 335.00976 * 8 6 5 37 37 H 1.09005 * 109.47068 * 60.00033 * 11 9 8 38 38 H 1.08997 * 109.47026 * 299.99898 * 11 9 8 39 39 H 1.09005 * 109.46743 * 60.00195 * 12 11 9 40 40 H 1.08997 * 109.47298 * 300.00093 * 12 11 9 41 41 H 1.09001 * 109.47043 * 305.00650 * 13 12 11 42 42 H 1.08999 * 109.47006 * 60.00203 * 14 13 12 43 43 H 1.09001 * 109.47517 * 300.00329 * 14 13 12 44 44 H 1.08994 * 109.47395 * 300.00033 * 15 14 13 45 45 H 1.09005 * 109.46719 * 180.02562 * 15 14 13 46 46 H 1.09001 * 109.47132 * 60.00014 * 16 15 14 47 47 H 1.08997 * 109.47003 * 179.97438 * 16 15 14 48 48 H 1.08998 * 109.47464 * 179.97438 * 17 16 15 49 49 H 1.09001 * 109.47306 * 300.00230 * 17 16 15 50 50 H 1.09007 * 109.47206 * 180.02562 * 18 17 16 51 51 H 1.08994 * 109.47395 * 60.00313 * 18 17 16 52 52 H 1.08999 * 109.59041 * 174.42192 * 19 6 5 53 53 H 1.09006 * 109.58009 * 294.84628 * 19 6 5 54 54 H 0.97000 * 119.99724 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5675 -0.8465 -1.1712 6 6 3.9569 -1.6658 0.0614 7 1 5.0411 -1.7702 0.1012 8 7 3.3405 -2.9924 -0.0184 9 6 3.8970 -4.0342 0.6306 10 8 4.9079 -3.8734 1.2812 11 6 3.2632 -5.3990 0.5480 12 6 4.0871 -6.3944 1.3674 13 6 3.4434 -7.7798 1.2841 14 6 4.1939 -8.7470 2.2017 15 6 3.5505 -10.1326 2.1178 16 6 3.6191 -10.6404 0.6762 17 6 2.8686 -9.6732 -0.2415 18 6 3.5121 -8.2876 -0.1576 19 6 3.4650 -0.9486 1.3226 20 7 2.0225 -0.7010 1.1936 21 6 1.1536 -1.1161 2.1672 22 1 0.1360 -1.3705 1.9101 23 6 1.5808 -1.2100 3.4846 24 7 2.7038 -0.6322 3.8551 25 14 0.5617 -2.1565 4.7317 26 1 0.9961 -3.5764 4.7505 27 1 0.7522 -1.5627 6.0794 28 1 -0.8732 -2.0827 4.3566 29 1 -0.3633 -1.0276 0.0052 30 1 -0.3634 0.5183 0.8875 31 1 -0.3633 0.5094 -0.8925 32 1 1.7660 -0.1642 -2.1370 33 1 1.6030 -1.7237 -1.2934 34 1 4.0061 0.1488 -1.0991 35 1 3.9378 -1.3422 -2.0685 36 1 2.5319 -3.1210 -0.5385 37 1 3.2324 -5.7229 -0.4923 38 1 2.2490 -5.3531 0.9445 39 1 4.1183 -6.0706 2.4077 40 1 5.1013 -6.4401 0.9705 41 1 2.4015 -7.7158 1.5978 42 1 4.1454 -8.3850 3.2286 43 1 5.2358 -8.8110 1.8879 44 1 2.5085 -10.0690 2.4314 45 1 4.0849 -10.8215 2.7719 46 1 4.6611 -10.7041 0.3627 47 1 3.1611 -11.6277 0.6166 48 1 2.9179 -10.0347 -1.2686 49 1 1.8266 -9.6095 0.0720 50 1 2.9771 -7.5984 -0.8111 51 1 4.5540 -8.3513 -0.4712 52 1 3.6518 -1.5745 2.1952 53 1 3.9904 0.0003 1.4317 54 1 3.0021 -0.6975 4.7758 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132464485.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:15 Heat of formation + Delta-G solvation = -77.296847 kcal Electronic energy + Delta-G solvation = -29126.388240 eV Core-core repulsion = 25481.900903 eV Total energy + Delta-G solvation = -3644.487336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.03029 -39.74523 -38.99615 -35.74954 -34.75703 -34.48543 -32.29689 -31.73184 -31.60712 -30.10361 -27.84057 -26.78848 -25.33913 -23.87426 -23.44783 -22.34387 -21.90262 -21.11278 -20.59501 -20.33114 -18.31640 -18.00069 -17.13663 -16.72409 -16.30589 -16.18898 -15.78672 -15.47963 -15.28052 -15.09212 -14.87075 -14.80203 -14.62326 -14.49108 -14.07894 -13.94309 -13.67217 -13.37922 -12.99320 -12.95213 -12.84938 -12.71371 -12.61650 -12.57107 -12.49052 -12.38010 -12.09222 -12.04890 -12.02541 -11.95749 -11.66017 -11.56498 -11.28592 -11.20572 -11.04034 -10.92736 -10.77864 -10.67869 -10.49986 -9.86246 -8.56742 -7.80706 -5.26424 1.41057 1.43189 1.50638 1.84445 2.47237 2.51536 3.35061 3.64533 3.73304 3.78020 3.84555 4.00709 4.08969 4.11905 4.15716 4.20844 4.25058 4.42593 4.49907 4.52612 4.59545 4.61251 4.67552 4.68816 4.70795 4.74181 4.82181 4.84376 4.85217 4.97823 5.00942 5.06041 5.12037 5.12631 5.13803 5.19261 5.25427 5.28558 5.30207 5.34532 5.37602 5.38705 5.44695 5.53904 5.58097 5.63550 5.65836 5.72211 5.76438 5.81712 6.45206 6.79724 7.19668 7.50387 7.94335 8.45155 9.24334 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012331 B = 0.003653 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.125665 B = 7662.360129 C = 8765.828147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.010 0.990 4 C -0.118 4.118 5 C -0.110 4.110 6 C 0.127 3.873 7 H 0.058 0.942 8 N -0.694 5.694 9 C 0.500 3.500 10 O -0.599 6.599 11 C -0.129 4.129 12 C -0.092 4.092 13 C -0.081 4.081 14 C -0.117 4.117 15 C -0.117 4.117 16 C -0.119 4.119 17 C -0.118 4.118 18 C -0.114 4.114 19 C 0.172 3.828 20 N -0.594 5.594 21 C -0.235 4.235 22 H 0.079 0.921 23 C -0.056 4.056 24 N -0.939 5.939 25 Si 0.950 3.050 26 H -0.294 1.294 27 H -0.303 1.303 28 H -0.259 1.259 29 H 0.053 0.947 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.407 0.593 37 H 0.124 0.876 38 H 0.096 0.904 39 H 0.035 0.965 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.048 0.952 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.062 0.938 50 H 0.073 0.927 51 H 0.060 0.940 52 H 0.047 0.953 53 H -0.010 1.010 54 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.810 -15.483 -14.503 21.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.028 0.972 4 C -0.156 4.156 5 C -0.148 4.148 6 C 0.021 3.979 7 H 0.077 0.923 8 N -0.344 5.344 9 C 0.288 3.712 10 O -0.481 6.481 11 C -0.169 4.169 12 C -0.130 4.130 13 C -0.099 4.099 14 C -0.155 4.155 15 C -0.155 4.155 16 C -0.156 4.156 17 C -0.155 4.155 18 C -0.151 4.151 19 C 0.045 3.955 20 N -0.317 5.317 21 C -0.366 4.366 22 H 0.097 0.903 23 C -0.251 4.251 24 N -0.586 5.586 25 Si 0.780 3.220 26 H -0.222 1.222 27 H -0.230 1.230 28 H -0.184 1.184 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.244 0.756 37 H 0.142 0.858 38 H 0.115 0.885 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.080 0.920 50 H 0.091 0.909 51 H 0.079 0.921 52 H 0.065 0.935 53 H 0.008 0.992 54 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.083 -15.328 -13.917 20.731 hybrid contribution -0.244 0.190 1.608 1.637 sum -1.328 -15.138 -12.309 19.556 Atomic orbital electron populations 1.21718 0.94571 1.01457 1.00752 1.20784 0.94260 0.93092 0.87156 0.97189 1.21944 0.94570 1.01198 0.97930 1.21650 0.97405 0.99672 0.96032 1.21411 0.96037 0.83087 0.97392 0.92340 1.45789 1.29630 1.07753 1.51272 1.21388 0.84007 0.87962 0.77792 1.90645 1.28096 1.86371 1.42978 1.21713 1.00703 0.89984 1.04465 1.21285 0.98919 0.94018 0.98793 1.21136 0.99496 0.92594 0.96697 1.21579 0.99607 0.95453 0.98812 1.21522 1.00817 0.95678 0.97471 1.21540 1.00748 0.98815 0.94502 1.21535 0.99496 0.94595 0.99911 1.21640 1.01275 0.97022 0.95159 1.20842 0.84200 0.95033 0.95406 1.44256 1.02150 1.65330 1.20009 1.19460 0.95100 1.35545 0.86460 0.90335 1.25752 0.98859 1.01443 0.99004 1.70174 1.25337 1.46891 1.16238 0.85502 0.79522 0.78198 0.78784 1.22175 1.23047 1.18366 0.92768 0.94779 0.90607 0.89235 0.91513 0.91348 0.89620 0.75567 0.85799 0.88529 0.94619 0.92300 0.91224 0.93288 0.92206 0.92123 0.91697 0.92126 0.91248 0.91028 0.91954 0.90881 0.92148 0.93468 0.99197 0.94993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 7.94 71.98 0.57 -3.66 16 2 C 0.15 5.71 3.50 44.97 0.16 5.86 16 3 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 4 C -0.12 -3.24 5.21 30.67 0.16 -3.08 16 5 C -0.11 -3.17 5.59 30.62 0.17 -3.00 16 6 C 0.13 4.90 2.81 45.07 0.13 5.03 16 7 H 0.06 2.42 7.58 -2.39 -0.02 2.40 16 8 N -0.69 -23.89 4.91 -442.17 -2.17 -26.06 16 9 C 0.50 18.70 7.80 87.66 0.68 19.38 16 10 O -0.60 -28.42 15.64 -3.04 -0.05 -28.47 16 11 C -0.13 -3.48 5.45 29.85 0.16 -3.32 16 12 C -0.09 -2.57 3.97 30.60 0.12 -2.45 16 13 C -0.08 -1.71 2.19 -10.79 -0.02 -1.73 16 14 C -0.12 -2.42 5.20 30.59 0.16 -2.26 16 15 C -0.12 -1.96 5.92 30.59 0.18 -1.77 16 16 C -0.12 -1.69 5.92 30.59 0.18 -1.51 16 17 C -0.12 -1.67 5.92 30.59 0.18 -1.49 16 18 C -0.11 -1.90 4.96 30.60 0.15 -1.74 16 19 C 0.17 8.65 4.89 86.36 0.42 9.07 16 20 N -0.59 -28.35 2.91 -675.21 -1.96 -30.32 16 21 C -0.24 -12.43 8.61 84.03 0.72 -11.70 16 22 H 0.08 3.94 6.20 -2.91 -0.02 3.92 16 23 C -0.06 -3.20 4.96 84.86 0.42 -2.78 16 24 N -0.94 -58.64 11.14 21.65 0.24 -58.39 16 25 Si 0.95 46.37 29.58 68.60 2.03 48.40 16 26 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 27 H -0.30 -15.23 7.11 99.48 0.71 -14.53 16 28 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 29 H 0.05 1.77 7.40 -2.39 -0.02 1.75 16 30 H 0.03 1.29 7.66 -2.38 -0.02 1.27 16 31 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 1.73 6.40 -2.39 -0.02 1.71 16 34 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.41 11.61 6.77 -92.71 -0.63 10.98 16 37 H 0.12 2.39 6.56 -2.38 -0.02 2.38 16 38 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.03 1.22 8.10 -2.38 -0.02 1.20 16 40 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 50 H 0.07 1.09 6.56 -2.38 -0.02 1.07 16 51 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.05 2.86 6.06 -2.39 -0.01 2.84 16 53 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 54 H 0.24 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -72.38 400.47 2.86 -69.52 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 0.22 Total: 26.47 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 4.55 Total: -1.15 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -3.90 Total: -114.77 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.05 Total: -28.47 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -72.38 2.86 -69.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132464485.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.777 kcal (2) G-P(sol) polarization free energy of solvation -72.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds