Wall clock time and date at job start Tue Mar 31 2020 15:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.58580 * 2 1 4 4 C 1.53193 * 109.70135 * 239.64546 * 2 1 3 5 5 C 1.53043 * 109.31151 * 185.50734 * 4 2 1 6 6 C 1.53035 * 109.53993 * 61.36463 * 5 4 2 7 7 H 1.08998 * 109.49648 * 58.58268 * 6 5 4 8 8 N 1.46490 * 109.50096 * 178.65195 * 6 5 4 9 9 C 1.34776 * 120.00479 * 205.00354 * 8 6 5 10 10 O 1.21284 * 119.99644 * 359.97438 * 9 8 6 11 11 C 1.50699 * 120.00431 * 179.97438 * 9 8 6 12 12 C 1.53000 * 109.47132 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47158 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47191 * 180.02562 * 13 12 11 15 15 C 1.54269 * 110.02916 * 292.16516 * 14 13 12 16 16 C 1.54892 * 104.19245 * 217.10885 * 15 14 13 17 17 C 1.54889 * 102.75109 * 37.94143 * 16 15 14 18 18 C 1.53871 * 110.03205 * 174.99930 * 14 13 12 19 19 C 1.53628 * 109.24198 * 298.51583 * 6 5 4 20 20 N 1.46922 * 108.54813 * 54.85008 * 19 6 5 21 21 C 1.36935 * 120.63035 * 126.36948 * 20 19 6 22 22 H 1.08001 * 119.99943 * 209.43568 * 21 20 19 23 23 C 1.38808 * 120.00119 * 29.43180 * 21 20 19 24 24 N 1.31618 * 119.99713 * 24.35386 * 23 21 20 25 25 Si 1.86802 * 120.00544 * 204.35336 * 23 21 20 26 26 H 1.48502 * 109.46862 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.46996 * 240.00482 * 25 23 21 28 28 H 1.48497 * 109.47044 * 119.99861 * 25 23 21 29 29 H 1.08999 * 109.46681 * 299.71301 * 1 2 3 30 30 H 1.09001 * 109.47076 * 59.71273 * 1 2 3 31 31 H 1.08996 * 109.46990 * 179.72024 * 1 2 3 32 32 H 1.08998 * 109.50079 * 305.45959 * 4 2 1 33 33 H 1.09006 * 109.49757 * 65.52205 * 4 2 1 34 34 H 1.09002 * 109.45956 * 181.38957 * 5 4 2 35 35 H 1.09001 * 109.45913 * 301.36103 * 5 4 2 36 36 H 0.96999 * 120.00399 * 24.99709 * 8 6 5 37 37 H 1.08996 * 109.47109 * 299.99818 * 11 9 8 38 38 H 1.09001 * 109.47115 * 60.00164 * 11 9 8 39 39 H 1.08996 * 109.47291 * 300.00094 * 12 11 9 40 40 H 1.09006 * 109.47020 * 59.99966 * 12 11 9 41 41 H 1.09004 * 109.46869 * 299.99786 * 13 12 11 42 42 H 1.08995 * 109.47099 * 59.99564 * 13 12 11 43 43 H 1.08999 * 110.01685 * 53.60653 * 14 13 12 44 44 H 1.09001 * 110.48752 * 335.78517 * 15 14 13 45 45 H 1.09000 * 110.48943 * 98.42974 * 15 14 13 46 46 H 1.09002 * 110.75193 * 279.62637 * 16 15 14 47 47 H 1.08994 * 110.91118 * 156.33287 * 16 15 14 48 48 H 1.09000 * 110.48575 * 203.37937 * 17 16 15 49 49 H 1.08994 * 110.48359 * 80.73661 * 17 16 15 50 50 H 1.09004 * 110.03239 * 238.56706 * 18 14 13 51 51 H 1.09001 * 110.03139 * 359.97438 * 18 14 13 52 52 H 1.09004 * 109.73414 * 295.11326 * 19 6 5 53 53 H 1.08999 * 109.66677 * 174.54874 * 19 6 5 54 54 H 0.97005 * 120.00510 * 4.04071 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0465 -0.7288 -1.2445 5 6 3.5706 -0.8443 -1.1674 6 6 3.9603 -1.6607 0.0669 7 1 3.5037 -2.6488 0.0086 8 7 5.4177 -1.7980 0.1223 9 6 5.9723 -2.8396 0.7734 10 8 5.2646 -3.6631 1.3139 11 6 7.4715 -2.9812 0.8299 12 6 7.8356 -4.2378 1.6231 13 6 9.3578 -4.3812 1.6810 14 6 9.7219 -5.6382 2.4736 15 6 9.3415 -5.4558 3.9575 16 6 10.4800 -6.1658 4.7315 17 6 11.7348 -5.8105 3.8958 18 6 11.2435 -5.8637 2.4345 19 6 3.4660 -0.9375 1.3290 20 7 2.0226 -0.6980 1.1953 21 6 1.1535 -1.1125 2.1690 22 1 0.1397 -1.3796 1.9097 23 6 1.5756 -1.1895 3.4891 24 7 2.5842 -0.4513 3.9016 25 14 0.7122 -2.3407 4.6803 26 1 -0.3822 -3.0539 3.9739 27 1 0.1449 -1.5545 5.8051 28 1 1.6872 -3.3283 5.2086 29 1 -0.3633 0.5094 0.8926 30 1 -0.3633 0.5183 -0.8874 31 1 -0.3633 -1.0276 -0.0050 32 1 1.6080 -1.7257 -1.2906 33 1 1.7683 -0.1675 -2.1366 34 1 3.9430 -1.3407 -2.0636 35 1 4.0071 0.1519 -1.0962 36 1 5.9837 -1.1394 -0.3097 37 1 7.8672 -3.0627 -0.1824 38 1 7.9009 -2.1065 1.3185 39 1 7.4400 -4.1559 2.6354 40 1 7.4062 -5.1128 1.1349 41 1 9.7538 -4.4630 0.6687 42 1 9.7868 -3.5063 2.1693 43 1 9.2054 -6.5037 2.0586 44 1 9.3074 -4.3973 4.2153 45 1 8.3834 -5.9315 4.1670 46 1 10.3206 -7.2440 4.7498 47 1 10.5661 -5.7723 5.7442 48 1 12.5232 -6.5450 4.0603 49 1 12.0871 -4.8093 4.1437 50 1 11.4654 -6.8391 2.0012 51 1 11.7225 -5.0779 1.8504 52 1 3.9861 0.0145 1.4352 53 1 3.6538 -1.5585 2.2049 54 1 2.9947 0.1891 3.2996 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132538356.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:36 Heat of formation + Delta-G solvation = -81.788273 kcal Electronic energy + Delta-G solvation = -28154.693632 eV Core-core repulsion = 24510.011532 eV Total energy + Delta-G solvation = -3644.682099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.04706 -39.60558 -39.21270 -36.15104 -35.20092 -34.89245 -32.45887 -31.61054 -30.74606 -29.54971 -27.86975 -27.03627 -26.03625 -23.97343 -23.07048 -22.23724 -21.51989 -21.30084 -20.85552 -20.38326 -18.97445 -18.00349 -17.16588 -16.97395 -16.66604 -16.40915 -16.00912 -15.66964 -15.61031 -15.33923 -15.06301 -15.01755 -14.62638 -14.22162 -14.16103 -13.96489 -13.59584 -13.33989 -13.19731 -12.96058 -12.93140 -12.72936 -12.58076 -12.44521 -12.21909 -11.96827 -11.95077 -11.94308 -11.88074 -11.80061 -11.69191 -11.58526 -11.54565 -11.46921 -11.35505 -11.16267 -11.13534 -10.74399 -10.46060 -10.11515 -8.87712 -8.22298 -5.38493 1.49746 1.60217 1.70509 1.73406 2.22878 2.62345 3.24935 3.50423 3.66572 3.75244 3.78950 3.80457 3.90643 3.99209 4.10233 4.12701 4.15314 4.26216 4.41667 4.51037 4.51923 4.58315 4.58684 4.61718 4.66465 4.69807 4.78426 4.79601 4.84148 4.87800 4.90381 4.95239 4.96284 5.01124 5.06282 5.07490 5.12712 5.14917 5.18866 5.21864 5.26609 5.31553 5.39275 5.43710 5.45306 5.50535 5.52321 5.59686 5.61831 5.92311 6.40928 6.64000 7.08443 7.37615 7.80616 8.24763 9.02023 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013687 B = 0.002862 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.314296 B = 9781.725085 C =11419.292924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.154 3.846 3 H 0.022 0.978 4 C -0.118 4.118 5 C -0.106 4.106 6 C 0.136 3.864 7 H 0.047 0.953 8 N -0.713 5.713 9 C 0.496 3.504 10 O -0.594 6.594 11 C -0.126 4.126 12 C -0.103 4.103 13 C -0.101 4.101 14 C -0.095 4.095 15 C -0.127 4.127 16 C -0.127 4.127 17 C -0.123 4.123 18 C -0.117 4.117 19 C 0.161 3.839 20 N -0.611 5.611 21 C -0.341 4.341 22 H 0.059 0.941 23 C -0.080 4.080 24 N -0.946 5.946 25 Si 1.109 2.891 26 H -0.271 1.271 27 H -0.285 1.285 28 H -0.300 1.300 29 H 0.034 0.966 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.415 0.585 37 H 0.128 0.872 38 H 0.111 0.889 39 H 0.039 0.961 40 H 0.051 0.949 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.046 0.954 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.072 0.928 49 H 0.066 0.934 50 H 0.067 0.933 51 H 0.075 0.925 52 H 0.005 0.995 53 H 0.027 0.973 54 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.671 -5.086 -11.043 21.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.049 3.951 3 H 0.040 0.960 4 C -0.158 4.158 5 C -0.144 4.144 6 C 0.029 3.971 7 H 0.066 0.934 8 N -0.365 5.365 9 C 0.284 3.716 10 O -0.474 6.474 11 C -0.166 4.166 12 C -0.141 4.141 13 C -0.138 4.138 14 C -0.113 4.113 15 C -0.165 4.165 16 C -0.165 4.165 17 C -0.160 4.160 18 C -0.154 4.154 19 C 0.034 3.966 20 N -0.337 5.337 21 C -0.471 4.471 22 H 0.077 0.923 23 C -0.276 4.276 24 N -0.589 5.589 25 Si 0.935 3.065 26 H -0.196 1.196 27 H -0.211 1.211 28 H -0.228 1.228 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.252 0.748 37 H 0.146 0.854 38 H 0.129 0.871 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.091 0.909 49 H 0.085 0.915 50 H 0.085 0.915 51 H 0.094 0.906 52 H 0.023 0.977 53 H 0.046 0.954 54 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 17.126 -6.242 -9.139 20.390 hybrid contribution -0.263 0.898 -0.974 1.350 sum 16.863 -5.344 -10.113 20.376 Atomic orbital electron populations 1.21698 0.94825 1.00948 1.00879 1.20811 0.94312 0.93251 0.86708 0.95987 1.21945 0.94851 1.00729 0.98237 1.21638 0.96804 1.00071 0.95870 1.21403 0.80157 0.98688 0.96825 0.93443 1.45978 1.07156 1.27537 1.55866 1.21730 0.92752 0.80312 0.76765 1.90725 1.65674 1.44240 1.46786 1.21724 0.88562 1.01371 1.04918 1.21314 0.96993 0.96462 0.99313 1.21671 0.93261 0.97728 1.01139 1.21797 0.96590 0.97979 0.94949 1.22489 0.98086 1.00401 0.95533 1.22520 0.95026 1.00209 0.98743 1.22361 0.97152 1.01752 0.94778 1.22203 0.93973 1.02213 0.97060 1.21070 0.84496 0.95122 0.95953 1.44417 1.02124 1.66285 1.20843 1.20179 0.96464 1.41792 0.88698 0.92311 1.27026 1.00760 1.01677 0.98118 1.70835 1.28008 1.22541 1.37490 0.82940 0.74775 0.74544 0.74262 1.19577 1.21141 1.22762 0.94640 0.90138 0.93883 0.93242 0.88423 0.89309 0.90580 0.74781 0.85431 0.87094 0.94194 0.93009 0.89955 0.91080 0.91902 0.92110 0.93506 0.91611 0.91657 0.90905 0.91490 0.91468 0.90649 0.97720 0.95418 0.93727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 7.96 71.98 0.57 -4.17 16 2 C 0.15 6.25 3.49 44.98 0.16 6.40 16 3 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.12 -3.73 5.38 30.67 0.16 -3.56 16 5 C -0.11 -3.08 5.35 30.62 0.16 -2.91 16 6 C 0.14 5.28 2.62 45.22 0.12 5.40 16 7 H 0.05 2.20 7.58 -2.39 -0.02 2.18 16 8 N -0.71 -22.06 5.08 -441.49 -2.24 -24.31 16 9 C 0.50 17.05 7.80 87.66 0.68 17.73 16 10 O -0.59 -27.98 15.64 -3.04 -0.05 -28.03 16 11 C -0.13 -2.77 5.70 29.85 0.17 -2.60 16 12 C -0.10 -2.52 4.36 30.60 0.13 -2.38 16 13 C -0.10 -1.72 4.34 30.60 0.13 -1.59 16 14 C -0.09 -1.71 2.93 -10.07 -0.03 -1.74 16 15 C -0.13 -2.67 5.53 31.67 0.18 -2.50 16 16 C -0.13 -2.20 6.91 31.89 0.22 -1.98 16 17 C -0.12 -1.74 6.83 31.67 0.22 -1.52 16 18 C -0.12 -1.64 6.46 31.32 0.20 -1.44 16 19 C 0.16 8.05 4.29 86.51 0.37 8.42 16 20 N -0.61 -31.53 2.83 -674.39 -1.91 -33.43 16 21 C -0.34 -19.83 8.48 84.03 0.71 -19.11 16 22 H 0.06 3.38 6.30 -2.91 -0.02 3.36 16 23 C -0.08 -4.84 4.69 84.86 0.40 -4.44 16 24 N -0.95 -61.23 12.51 21.65 0.27 -60.96 16 25 Si 1.11 55.87 29.98 68.60 2.06 57.93 16 26 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 27 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 28 H -0.30 -15.53 7.11 99.48 0.71 -14.82 16 29 H 0.03 1.48 7.63 -2.39 -0.02 1.46 16 30 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.04 1.69 7.44 -2.39 -0.02 1.67 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 34 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.42 8.94 8.60 -92.71 -0.80 8.14 16 37 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.11 2.03 8.14 -2.39 -0.02 2.02 16 39 H 0.04 1.23 7.47 -2.39 -0.02 1.21 16 40 H 0.05 1.42 8.10 -2.38 -0.02 1.40 16 41 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.07 1.13 8.00 -2.39 -0.02 1.11 16 43 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.06 1.34 7.76 -2.39 -0.02 1.32 16 45 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 51 H 0.07 0.90 7.67 -2.39 -0.02 0.88 16 52 H 0.00 0.25 7.84 -2.38 -0.02 0.23 16 53 H 0.03 1.68 6.41 -2.39 -0.02 1.66 16 54 H 0.25 16.52 6.64 -92.70 -0.62 15.91 16 Total: -1.00 -79.72 408.17 2.89 -76.83 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 0.20 Total: 23.98 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 4.56 Total: -12.00 kcal Atomic # 7 Polarization: -114.83 SS G_CDS: -3.88 Total: -118.70 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.05 Total: -28.03 kcal Atomic # 14 Polarization: 55.87 SS G_CDS: 2.06 Total: 57.93 kcal Total: -79.72 2.89 -76.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132538356.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.959 kcal (2) G-P(sol) polarization free energy of solvation -79.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds