Wall clock time and date at job start Tue Mar 31 2020 15:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.58665 * 2 1 4 4 C 1.53192 * 109.58662 * 120.28122 * 2 1 3 5 5 C 1.53045 * 109.31093 * 174.42311 * 4 2 1 6 6 C 1.53043 * 109.53609 * 298.62932 * 5 4 2 7 7 H 1.08997 * 109.50109 * 301.38437 * 6 5 4 8 8 N 1.46497 * 109.49543 * 181.31539 * 6 5 4 9 9 C 1.34775 * 120.00099 * 155.00285 * 8 6 5 10 10 O 1.21279 * 119.99754 * 0.27649 * 9 8 6 11 11 C 1.50701 * 120.00357 * 180.02562 * 9 8 6 12 12 C 1.53007 * 109.47080 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47022 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47110 * 179.97438 * 13 12 11 15 15 C 1.54263 * 110.03393 * 292.16821 * 14 13 12 16 16 C 1.54893 * 104.19418 * 217.10573 * 15 14 13 17 17 C 1.54888 * 102.75024 * 37.94377 * 16 15 14 18 18 C 1.53878 * 110.03093 * 174.99985 * 14 13 12 19 19 C 1.53189 * 109.30941 * 61.36977 * 6 5 4 20 20 N 1.46925 * 108.77841 * 305.36403 * 19 6 5 21 21 C 1.36937 * 120.62847 * 233.59198 * 20 19 6 22 22 H 1.08006 * 119.99837 * 150.18290 * 21 20 19 23 23 C 1.38809 * 120.00012 * 330.17802 * 21 20 19 24 24 N 1.31622 * 120.00014 * 344.48336 * 23 21 20 25 25 Si 1.86800 * 119.99773 * 164.48729 * 23 21 20 26 26 H 1.48492 * 109.47448 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47212 * 120.00440 * 25 23 21 28 28 H 1.48498 * 109.47016 * 239.99690 * 25 23 21 29 29 H 1.09003 * 109.47086 * 299.71821 * 1 2 3 30 30 H 1.09000 * 109.47253 * 59.71690 * 1 2 3 31 31 H 1.09004 * 109.47172 * 179.72099 * 1 2 3 32 32 H 1.08997 * 109.50044 * 54.46866 * 4 2 1 33 33 H 1.08997 * 109.52657 * 294.38594 * 4 2 1 34 34 H 1.09001 * 109.45853 * 178.61562 * 5 4 2 35 35 H 1.08996 * 109.45234 * 58.65031 * 5 4 2 36 36 H 0.97006 * 120.00623 * 335.00911 * 8 6 5 37 37 H 1.08996 * 109.46805 * 299.99651 * 11 9 8 38 38 H 1.08994 * 109.47375 * 59.99687 * 11 9 8 39 39 H 1.09001 * 109.46691 * 299.99861 * 12 11 9 40 40 H 1.09003 * 109.47339 * 59.99728 * 12 11 9 41 41 H 1.09001 * 109.46845 * 300.00000 * 13 12 11 42 42 H 1.09003 * 109.47049 * 59.99840 * 13 12 11 43 43 H 1.09002 * 110.01632 * 53.60987 * 14 13 12 44 44 H 1.09006 * 110.48546 * 335.77956 * 15 14 13 45 45 H 1.09003 * 110.48899 * 98.42755 * 15 14 13 46 46 H 1.08997 * 110.75472 * 279.62570 * 16 15 14 47 47 H 1.09000 * 110.75671 * 156.25999 * 16 15 14 48 48 H 1.09003 * 110.48224 * 203.37916 * 17 16 15 49 49 H 1.08994 * 110.59994 * 80.78993 * 17 16 15 50 50 H 1.09003 * 110.03344 * 238.56689 * 18 14 13 51 51 H 1.08996 * 110.03180 * 359.94923 * 18 14 13 52 52 H 1.09004 * 109.58925 * 65.14687 * 19 6 5 53 53 H 1.09000 * 109.58674 * 185.57067 * 19 6 5 54 54 H 0.96996 * 119.99912 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5675 -0.8464 1.1712 6 6 3.9569 -1.6659 -0.0613 7 1 3.4988 -2.6531 -0.0015 8 7 5.4142 -1.8055 -0.1152 9 6 5.9677 -2.8491 -0.7640 10 8 5.2593 -3.6700 -1.3074 11 6 7.4668 -2.9931 -0.8189 12 6 7.8296 -4.2519 -1.6096 13 6 9.3515 -4.3977 -1.6659 14 6 9.7143 -5.6567 -2.4559 15 6 9.2816 -6.9141 -1.6741 16 6 10.4078 -7.9405 -1.9522 17 6 11.6822 -7.0602 -1.9444 18 6 11.2407 -5.7495 -2.6278 19 6 3.4650 -0.9487 -1.3225 20 7 2.0225 -0.7011 -1.1936 21 6 1.1537 -1.1156 -2.1675 22 1 0.1396 -1.3821 -1.9087 23 6 1.5764 -1.1931 -3.4874 24 7 2.6872 -0.5926 -3.8591 25 14 0.5687 -2.1494 -4.7361 26 1 -0.6263 -2.7269 -4.0701 27 1 0.1366 -1.2379 -5.8260 28 1 1.3951 -3.2441 -5.3051 29 1 -0.3633 0.5095 0.8925 30 1 -0.3634 0.5182 -0.8874 31 1 -0.3634 -1.0277 -0.0050 32 1 1.6030 -1.7236 1.2936 33 1 1.7661 -0.1646 2.1373 34 1 3.9378 -1.3421 2.0686 35 1 4.0060 0.1488 1.0990 36 1 5.9809 -1.1468 0.3161 37 1 7.8978 -2.1200 -1.3088 38 1 7.8615 -3.0734 0.1938 39 1 7.3984 -5.1251 -1.1201 40 1 7.4349 -4.1711 -2.6224 41 1 9.7823 -3.5243 -2.1556 42 1 9.7466 -4.4782 -0.6532 43 1 9.2292 -5.6375 -3.4318 44 1 9.2179 -6.6973 -0.6078 45 1 8.3268 -7.2852 -2.0467 46 1 10.2695 -8.4115 -2.9254 47 1 10.4512 -8.6900 -1.1619 48 1 12.4792 -7.5379 -2.5143 49 1 12.0083 -6.8666 -0.9226 50 1 11.4962 -5.7763 -3.6871 51 1 11.7228 -4.8972 -2.1492 52 1 3.9903 0.0001 -1.4317 53 1 3.6518 -1.5746 -2.1951 54 1 2.9823 -0.6465 -4.7815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132538358.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:44 Heat of formation + Delta-G solvation = -78.608064 kcal Electronic energy + Delta-G solvation = -28061.660700 eV Core-core repulsion = 24417.116505 eV Total energy + Delta-G solvation = -3644.544195 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.95156 -39.52029 -39.11742 -36.01124 -35.16919 -34.65354 -32.37954 -31.76877 -30.70710 -29.54034 -27.84633 -27.05923 -26.01922 -24.03299 -23.00454 -22.05333 -21.47747 -21.25497 -20.78133 -20.36923 -18.34787 -17.95318 -17.33526 -16.85237 -16.67494 -16.43730 -15.93285 -15.73200 -15.44816 -15.26316 -15.02265 -14.70722 -14.48788 -14.19214 -14.15124 -13.89725 -13.67614 -13.34421 -13.10509 -12.97226 -12.76271 -12.72718 -12.56613 -12.41572 -12.28612 -12.11024 -11.97814 -11.93775 -11.92969 -11.77914 -11.66521 -11.53795 -11.45715 -11.40893 -11.34245 -11.16462 -11.13003 -10.67271 -10.56110 -10.00953 -8.62603 -7.86837 -5.33146 1.37934 1.42623 1.50514 1.77223 2.31128 2.49799 3.29590 3.62238 3.70932 3.77364 3.80112 3.88671 4.00999 4.09263 4.14276 4.14818 4.26979 4.39402 4.50919 4.54391 4.59233 4.62776 4.64788 4.70835 4.71139 4.78681 4.80549 4.85535 4.89432 4.91813 4.97177 5.00249 5.02045 5.06590 5.08452 5.14868 5.18562 5.27676 5.30898 5.33037 5.36227 5.41155 5.46404 5.51758 5.53578 5.54357 5.60392 5.61590 5.69579 5.81481 6.40561 6.72234 7.14924 7.44958 7.89173 8.38432 9.18266 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.014422 B = 0.002696 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.997143 B =10384.345131 C =11695.941177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.022 0.978 4 C -0.119 4.119 5 C -0.106 4.106 6 C 0.130 3.870 7 H 0.045 0.955 8 N -0.712 5.712 9 C 0.496 3.504 10 O -0.595 6.595 11 C -0.127 4.127 12 C -0.102 4.102 13 C -0.100 4.100 14 C -0.098 4.098 15 C -0.123 4.123 16 C -0.127 4.127 17 C -0.122 4.122 18 C -0.119 4.119 19 C 0.181 3.819 20 N -0.604 5.604 21 C -0.249 4.249 22 H 0.074 0.926 23 C -0.055 4.055 24 N -0.933 5.933 25 Si 0.955 3.045 26 H -0.263 1.263 27 H -0.287 1.287 28 H -0.302 1.302 29 H 0.079 0.921 30 H 0.037 0.963 31 H 0.044 0.956 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.414 0.586 37 H 0.111 0.889 38 H 0.127 0.873 39 H 0.054 0.946 40 H 0.036 0.964 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.047 0.953 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.060 0.940 51 H 0.074 0.926 52 H -0.003 1.003 53 H 0.038 0.962 54 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.359 -5.650 12.202 21.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.158 4.158 5 C -0.144 4.144 6 C 0.024 3.976 7 H 0.064 0.936 8 N -0.364 5.364 9 C 0.285 3.715 10 O -0.476 6.476 11 C -0.166 4.166 12 C -0.140 4.140 13 C -0.138 4.138 14 C -0.116 4.116 15 C -0.161 4.161 16 C -0.165 4.165 17 C -0.159 4.159 18 C -0.157 4.157 19 C 0.054 3.946 20 N -0.328 5.328 21 C -0.379 4.379 22 H 0.091 0.909 23 C -0.250 4.250 24 N -0.580 5.580 25 Si 0.784 3.216 26 H -0.187 1.187 27 H -0.214 1.214 28 H -0.229 1.229 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.251 0.749 37 H 0.129 0.871 38 H 0.145 0.855 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.090 0.910 50 H 0.079 0.921 51 H 0.093 0.907 52 H 0.015 0.985 53 H 0.057 0.943 54 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 16.883 -6.199 11.683 21.447 hybrid contribution -0.573 -0.172 -1.442 1.561 sum 16.310 -6.371 10.241 20.285 Atomic orbital electron populations 1.21734 0.94796 1.01074 1.01068 1.20810 0.94285 0.93378 0.86763 0.96015 1.21955 0.94773 1.00771 0.98289 1.21638 0.96948 0.99962 0.95885 1.21450 0.80018 0.98712 0.97461 0.93620 1.45966 1.07338 1.27231 1.55839 1.21670 0.92645 0.80372 0.76841 1.90713 1.65614 1.44542 1.46714 1.21718 0.88775 1.01273 1.04839 1.21304 0.96921 0.96592 0.99165 1.21665 0.93330 0.97542 1.01229 1.21808 0.96337 0.94993 0.98500 1.22470 0.97987 0.95270 1.00346 1.22521 0.94913 0.97537 1.01480 1.22352 0.97198 0.95268 1.01096 1.22212 0.94191 0.98529 1.00750 1.20748 0.83721 0.95147 0.94992 1.44336 1.02602 1.65577 1.20306 1.19495 0.95480 1.36327 0.86623 0.90875 1.25815 0.99166 1.00993 0.99027 1.70167 1.25847 1.45729 1.16223 0.85368 0.78568 0.78100 0.79516 1.18665 1.21372 1.22927 0.90193 0.94360 0.93672 0.93126 0.88571 0.89631 0.90805 0.74927 0.87130 0.85547 0.92764 0.94542 0.91019 0.90044 0.92833 0.91110 0.93388 0.92047 0.91055 0.91204 0.90993 0.92129 0.90692 0.98460 0.94341 0.94706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 7.95 71.98 0.57 -4.16 16 2 C 0.15 6.16 3.50 44.97 0.16 6.32 16 3 H 0.02 0.90 8.14 -2.39 -0.02 0.89 16 4 C -0.12 -3.73 5.37 30.67 0.16 -3.57 16 5 C -0.11 -3.15 5.35 30.62 0.16 -2.99 16 6 C 0.13 5.14 2.60 45.07 0.12 5.25 16 7 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 8 N -0.71 -22.61 5.08 -442.17 -2.25 -24.85 16 9 C 0.50 17.34 7.80 87.66 0.68 18.02 16 10 O -0.60 -28.28 15.65 -3.03 -0.05 -28.33 16 11 C -0.13 -2.84 5.70 29.85 0.17 -2.67 16 12 C -0.10 -2.53 4.36 30.60 0.13 -2.39 16 13 C -0.10 -1.75 4.34 30.59 0.13 -1.62 16 14 C -0.10 -1.81 2.93 -10.07 -0.03 -1.84 16 15 C -0.12 -2.29 5.53 31.67 0.18 -2.12 16 16 C -0.13 -1.95 6.91 31.89 0.22 -1.73 16 17 C -0.12 -1.60 6.83 31.67 0.22 -1.39 16 18 C -0.12 -1.75 6.46 31.32 0.20 -1.55 16 19 C 0.18 9.24 4.86 86.36 0.42 9.66 16 20 N -0.60 -31.19 2.99 -675.24 -2.02 -33.21 16 21 C -0.25 -14.22 8.58 84.03 0.72 -13.50 16 22 H 0.07 4.04 6.23 -2.91 -0.02 4.02 16 23 C -0.05 -3.28 4.94 84.86 0.42 -2.86 16 24 N -0.93 -58.93 11.23 21.65 0.24 -58.69 16 25 Si 0.96 48.53 29.58 68.60 2.03 50.56 16 26 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 27 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 28 H -0.30 -15.82 7.11 99.48 0.71 -15.12 16 29 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.04 1.54 7.67 -2.39 -0.02 1.53 16 31 H 0.04 1.70 7.40 -2.39 -0.02 1.69 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.41 9.32 8.60 -92.70 -0.80 8.52 16 37 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.05 1.50 7.47 -2.39 -0.02 1.48 16 40 H 0.04 1.13 8.10 -2.39 -0.02 1.12 16 41 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.08 1.13 8.00 -2.39 -0.02 1.12 16 43 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.07 1.24 7.76 -2.38 -0.02 1.23 16 45 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 51 H 0.07 0.95 7.67 -2.39 -0.02 0.93 16 52 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 53 H 0.04 2.37 6.15 -2.39 -0.01 2.36 16 54 H 0.24 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -77.83 409.19 2.64 -75.19 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.04 Total: 22.46 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 4.64 Total: -3.13 kcal Atomic # 7 Polarization: -112.73 SS G_CDS: -4.02 Total: -116.75 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.05 Total: -28.33 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.03 Total: 50.56 kcal Total: -77.83 2.64 -75.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132538358.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.418 kcal (2) G-P(sol) polarization free energy of solvation -77.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds