Wall clock time and date at job start Tue Mar 31 2020 15:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.58414 * 2 1 4 4 C 1.53192 * 109.58585 * 239.70972 * 2 1 3 5 5 C 1.53039 * 109.31190 * 185.57979 * 4 2 1 6 6 C 1.53044 * 109.54025 * 61.36509 * 5 4 2 7 7 H 1.08995 * 109.49749 * 178.64975 * 6 5 4 8 8 N 1.46502 * 109.49480 * 58.58483 * 6 5 4 9 9 C 1.34773 * 119.99814 * 154.99872 * 8 6 5 10 10 O 1.21272 * 120.00221 * 0.02562 * 9 8 6 11 11 C 1.50704 * 119.99934 * 180.02562 * 9 8 6 12 12 C 1.52995 * 109.47093 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47241 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47241 * 179.97438 * 13 12 11 15 15 C 1.54272 * 110.02917 * 292.16230 * 14 13 12 16 16 C 1.54886 * 104.19365 * 217.10770 * 15 14 13 17 17 C 1.54886 * 102.75102 * 37.94425 * 16 15 14 18 18 C 1.53869 * 110.03235 * 174.99852 * 14 13 12 19 19 C 1.53193 * 109.31289 * 298.63882 * 6 5 4 20 20 N 1.46923 * 108.77747 * 54.62951 * 19 6 5 21 21 C 1.36944 * 120.63322 * 126.36751 * 20 19 6 22 22 H 1.07995 * 120.00088 * 221.15592 * 21 20 19 23 23 C 1.38814 * 119.99446 * 41.15319 * 21 20 19 24 24 N 1.31616 * 119.99851 * 214.88266 * 23 21 20 25 25 Si 1.86797 * 120.00025 * 34.88359 * 23 21 20 26 26 H 1.48511 * 109.47073 * 84.62945 * 25 23 21 27 27 H 1.48499 * 109.47015 * 204.62317 * 25 23 21 28 28 H 1.48494 * 109.47453 * 324.62752 * 25 23 21 29 29 H 1.09002 * 109.47378 * 180.28264 * 1 2 3 30 30 H 1.09006 * 109.47635 * 300.28986 * 1 2 3 31 31 H 1.09011 * 109.46951 * 60.28797 * 1 2 3 32 32 H 1.09001 * 109.49744 * 65.62801 * 4 2 1 33 33 H 1.08996 * 109.49875 * 305.53504 * 4 2 1 34 34 H 1.09009 * 109.45926 * 301.34688 * 5 4 2 35 35 H 1.08993 * 109.46305 * 181.38823 * 5 4 2 36 36 H 0.96999 * 120.00105 * 335.00637 * 8 6 5 37 37 H 1.09007 * 109.46668 * 300.00316 * 11 9 8 38 38 H 1.08999 * 109.47508 * 59.99843 * 11 9 8 39 39 H 1.09004 * 109.46810 * 299.99765 * 12 11 9 40 40 H 1.08999 * 109.47451 * 59.99343 * 12 11 9 41 41 H 1.09007 * 109.46539 * 299.99862 * 13 12 11 42 42 H 1.08998 * 109.47134 * 59.98892 * 13 12 11 43 43 H 1.08997 * 110.01869 * 53.60393 * 14 13 12 44 44 H 1.08999 * 110.48554 * 335.78354 * 15 14 13 45 45 H 1.08998 * 110.48639 * 98.42872 * 15 14 13 46 46 H 1.09008 * 110.75888 * 279.62512 * 16 15 14 47 47 H 1.09002 * 110.75768 * 156.25813 * 16 15 14 48 48 H 1.09006 * 110.48455 * 203.37907 * 17 16 15 49 49 H 1.08998 * 110.60273 * 80.79053 * 17 16 15 50 50 H 1.09004 * 110.03461 * 238.56779 * 18 14 13 51 51 H 1.08998 * 110.03319 * 359.94866 * 18 14 13 52 52 H 1.08992 * 109.58765 * 174.41625 * 19 6 5 53 53 H 1.09001 * 109.58784 * 294.84615 * 19 6 5 54 54 H 0.97001 * 119.99954 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7280 -1.2462 5 6 3.5674 -0.8467 -1.1711 6 6 3.9569 -1.6659 0.0616 7 1 5.0411 -1.7703 0.1014 8 7 3.3404 -2.9925 -0.0182 9 6 3.8969 -4.0343 0.6309 10 8 4.9077 -3.8735 1.2814 11 6 3.2631 -5.3991 0.5483 12 6 4.0863 -6.3941 1.3687 13 6 3.4432 -7.7799 1.2844 14 6 4.2668 -8.7750 2.1042 15 6 5.6410 -8.9977 1.4396 16 6 5.9318 -10.5025 1.6633 17 6 4.5368 -11.1507 1.4822 18 6 3.5647 -10.1440 2.1314 19 6 3.4650 -0.9486 1.3227 20 7 2.0225 -0.7010 1.1937 21 6 1.1534 -1.1161 2.1672 22 1 0.2053 -1.5546 1.8934 23 6 1.4914 -0.9732 3.5060 24 7 1.1102 -1.8793 4.3812 25 14 2.4873 0.5048 4.0653 26 1 1.5759 1.6511 4.3121 27 1 3.2105 0.1690 5.3181 28 1 3.4670 0.8695 3.0107 29 1 -0.3634 -1.0277 0.0051 30 1 -0.3634 0.5183 0.8874 31 1 -0.3633 0.5094 -0.8927 32 1 1.7660 -0.1644 -2.1370 33 1 1.6029 -1.7238 -1.2934 34 1 4.0061 0.1486 -1.0991 35 1 3.9378 -1.3424 -2.0683 36 1 2.5318 -3.1210 -0.5383 37 1 2.2488 -5.3531 0.9448 38 1 3.2323 -5.7231 -0.4920 39 1 5.1008 -6.4400 0.9726 40 1 4.1168 -6.0699 2.4089 41 1 2.4286 -7.7342 1.6802 42 1 3.4130 -8.1037 0.2440 43 1 4.3984 -8.4027 3.1202 44 1 5.5904 -8.7732 0.3742 45 1 6.4024 -8.3860 1.9235 46 1 6.3113 -10.6772 2.6701 47 1 6.6313 -10.8761 0.9155 48 1 4.4924 -12.1104 1.9974 49 1 4.3063 -11.2757 0.4243 50 1 3.3564 -10.4365 3.1605 51 1 2.6369 -10.0991 1.5612 52 1 3.6516 -1.5744 2.1953 53 1 3.9902 0.0003 1.4318 54 1 1.3467 -1.7797 5.3167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132538359.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:48 Heat of formation + Delta-G solvation = -72.531308 kcal Electronic energy + Delta-G solvation = -28660.316509 eV Core-core repulsion = 25016.035822 eV Total energy + Delta-G solvation = -3644.280687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.04257 -39.55957 -39.09141 -35.80900 -35.14023 -34.45837 -32.50987 -32.35754 -30.66488 -29.52684 -27.99182 -26.85472 -26.16935 -24.10656 -23.08804 -22.02808 -21.59977 -21.18083 -20.48997 -20.40400 -18.36717 -18.07792 -17.10316 -16.84825 -16.71877 -16.43301 -16.08011 -15.69230 -15.57297 -15.27966 -14.97451 -14.69585 -14.44212 -14.35672 -14.15888 -13.96643 -13.84328 -13.44251 -13.37511 -13.00320 -12.90297 -12.72036 -12.58677 -12.48055 -12.38922 -12.15588 -11.92516 -11.91706 -11.80690 -11.76406 -11.59968 -11.52122 -11.43877 -11.34502 -11.34326 -11.15581 -11.13059 -10.67370 -10.49263 -9.88119 -8.54528 -8.25179 -5.47196 1.31981 1.38650 1.45007 1.82339 2.44994 2.48287 2.95763 3.44802 3.68572 3.78540 3.81129 3.89055 4.01949 4.07422 4.14744 4.16068 4.18339 4.40043 4.50509 4.55629 4.60359 4.62573 4.66032 4.67674 4.72543 4.75689 4.81514 4.81782 4.84754 4.94015 4.98217 5.02019 5.02650 5.05595 5.10636 5.11047 5.13325 5.15859 5.26151 5.29139 5.31288 5.34633 5.41885 5.47921 5.52858 5.57208 5.60773 5.66213 5.74906 5.95929 6.29506 6.76003 7.05558 7.46326 7.70883 8.21537 8.94393 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.014883 B = 0.003029 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.883922 B = 9241.071743 C =10023.614287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.151 3.849 3 H 0.030 0.970 4 C -0.120 4.120 5 C -0.109 4.109 6 C 0.130 3.870 7 H 0.070 0.930 8 N -0.697 5.697 9 C 0.504 3.496 10 O -0.598 6.598 11 C -0.131 4.131 12 C -0.096 4.096 13 C -0.102 4.102 14 C -0.097 4.097 15 C -0.121 4.121 16 C -0.125 4.125 17 C -0.121 4.121 18 C -0.121 4.121 19 C 0.136 3.864 20 N -0.598 5.598 21 C -0.240 4.240 22 H 0.054 0.946 23 C -0.002 4.002 24 N -0.925 5.925 25 Si 0.887 3.113 26 H -0.290 1.290 27 H -0.312 1.312 28 H -0.249 1.249 29 H 0.044 0.956 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.407 0.593 37 H 0.092 0.908 38 H 0.124 0.876 39 H 0.062 0.938 40 H 0.032 0.968 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.051 0.949 46 H 0.062 0.938 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.071 0.929 50 H 0.059 0.941 51 H 0.070 0.930 52 H 0.023 0.977 53 H 0.026 0.974 54 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.654 -12.090 -15.490 20.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.047 3.953 3 H 0.048 0.952 4 C -0.159 4.159 5 C -0.147 4.147 6 C 0.024 3.976 7 H 0.088 0.912 8 N -0.347 5.347 9 C 0.292 3.708 10 O -0.479 6.479 11 C -0.170 4.170 12 C -0.134 4.134 13 C -0.139 4.139 14 C -0.115 4.115 15 C -0.158 4.158 16 C -0.163 4.163 17 C -0.158 4.158 18 C -0.159 4.159 19 C 0.009 3.991 20 N -0.323 5.323 21 C -0.370 4.370 22 H 0.071 0.929 23 C -0.201 4.201 24 N -0.568 5.568 25 Si 0.715 3.285 26 H -0.217 1.217 27 H -0.240 1.240 28 H -0.174 1.174 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.244 0.756 37 H 0.110 0.890 38 H 0.142 0.858 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.092 0.908 48 H 0.088 0.912 49 H 0.090 0.910 50 H 0.078 0.922 51 H 0.089 0.911 52 H 0.042 0.958 53 H 0.044 0.956 54 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.324 -12.000 -14.899 19.858 hybrid contribution 0.056 1.068 1.534 1.870 sum 5.380 -10.932 -13.365 18.085 Atomic orbital electron populations 1.21697 0.94871 1.01146 1.00729 1.20909 0.94133 0.93654 0.86642 0.95247 1.21947 0.94831 1.01129 0.97960 1.21667 0.97077 1.00060 0.95903 1.21354 0.96612 0.82943 0.96731 0.91171 1.45832 1.29713 1.07828 1.51373 1.21319 0.83849 0.87964 0.77639 1.90622 1.27974 1.86399 1.42943 1.21674 1.00671 0.90380 1.04320 1.21248 0.99113 0.94280 0.98738 1.21669 0.98617 0.92622 1.01042 1.21794 0.95490 0.95532 0.98730 1.22455 0.95949 0.96658 1.00763 1.22515 0.97458 0.94744 1.01580 1.22349 0.94310 0.98083 1.01094 1.22223 0.98904 0.93826 1.00944 1.21550 0.85197 0.96010 0.96322 1.44413 1.01657 1.65762 1.20489 1.18433 1.01266 1.32493 0.84776 0.92889 1.26044 0.98617 0.98713 0.96690 1.70158 1.50320 1.32968 1.03315 0.86630 0.79739 0.84593 0.77490 1.21688 1.24037 1.17360 0.93687 0.94777 0.90421 0.88911 0.91976 0.90326 0.89393 0.75563 0.88999 0.85830 0.91929 0.94863 0.92033 0.89992 0.92937 0.90996 0.92994 0.91950 0.90793 0.91169 0.90993 0.92242 0.91084 0.95819 0.95620 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 8.07 71.98 0.58 -3.61 16 2 C 0.15 5.20 3.50 44.97 0.16 5.35 16 3 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.12 -3.01 5.21 30.67 0.16 -2.85 16 5 C -0.11 -2.72 5.59 30.62 0.17 -2.55 16 6 C 0.13 4.46 2.81 45.07 0.13 4.59 16 7 H 0.07 2.52 7.58 -2.39 -0.02 2.50 16 8 N -0.70 -22.84 4.91 -442.17 -2.17 -25.02 16 9 C 0.50 18.32 7.80 87.66 0.68 19.00 16 10 O -0.60 -27.02 15.64 -3.00 -0.05 -27.07 16 11 C -0.13 -3.58 5.70 29.85 0.17 -3.41 16 12 C -0.10 -2.68 4.36 30.59 0.13 -2.55 16 13 C -0.10 -2.18 4.34 30.59 0.13 -2.05 16 14 C -0.10 -2.03 2.93 -10.07 -0.03 -2.06 16 15 C -0.12 -2.34 5.53 31.67 0.18 -2.16 16 16 C -0.13 -2.01 6.91 31.88 0.22 -1.79 16 17 C -0.12 -1.77 6.83 31.67 0.22 -1.56 16 18 C -0.12 -2.11 6.46 31.32 0.20 -1.91 16 19 C 0.14 5.99 4.19 86.36 0.36 6.36 16 20 N -0.60 -26.53 2.39 -675.24 -1.61 -28.14 16 21 C -0.24 -12.92 8.44 84.03 0.71 -12.21 16 22 H 0.05 3.07 6.81 -2.91 -0.02 3.05 16 23 C 0.00 -0.13 4.82 84.86 0.41 0.28 16 24 N -0.92 -58.15 13.97 21.65 0.30 -57.84 16 25 Si 0.89 46.55 27.39 68.60 1.88 48.43 16 26 H -0.29 -15.01 7.11 99.48 0.71 -14.31 16 27 H -0.31 -17.04 7.11 99.48 0.71 -16.33 16 28 H -0.25 -12.37 5.24 99.48 0.52 -11.85 16 29 H 0.04 1.56 7.38 -2.39 -0.02 1.54 16 30 H 0.03 1.29 7.71 -2.38 -0.02 1.28 16 31 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 1.55 6.40 -2.39 -0.02 1.53 16 34 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.41 11.40 6.77 -92.71 -0.63 10.77 16 37 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 38 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.06 1.78 7.47 -2.39 -0.02 1.77 16 40 H 0.03 1.16 8.10 -2.39 -0.02 1.14 16 41 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.08 1.42 8.00 -2.39 -0.02 1.40 16 43 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.07 1.31 7.76 -2.39 -0.02 1.29 16 45 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 47 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 49 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.07 1.15 7.67 -2.39 -0.02 1.13 16 52 H 0.02 1.26 7.01 -2.39 -0.02 1.24 16 53 H 0.03 1.15 6.71 -2.39 -0.02 1.13 16 54 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -71.81 403.04 2.96 -68.85 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.03 Total: 23.91 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 4.58 Total: -3.14 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -3.48 Total: -111.00 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.05 Total: -27.07 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.88 Total: 48.43 kcal Total: -71.81 2.96 -68.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132538359.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.680 kcal (2) G-P(sol) polarization free energy of solvation -71.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds