Wall clock time and date at job start Tue Mar 31 2020 15:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46980 * 2 1 4 4 C 1.53001 * 109.46918 * 119.99527 * 2 1 3 5 5 C 1.53002 * 109.46918 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.46855 * 299.99892 * 5 4 2 7 7 H 1.08993 * 109.47458 * 299.99792 * 6 5 4 8 8 C 1.50702 * 109.46702 * 179.97438 * 6 5 4 9 9 O 1.21288 * 120.00152 * 264.57128 * 8 6 5 10 10 N 1.34778 * 119.99833 * 84.57580 * 8 6 5 11 11 C 1.46930 * 120.63047 * 174.77010 * 10 8 6 12 12 C 1.53196 * 108.77192 * 233.62986 * 11 10 8 13 13 C 1.53039 * 109.31106 * 305.36051 * 12 11 10 14 14 H 1.08997 * 109.45824 * 181.38858 * 13 12 11 15 15 C 1.52999 * 109.46090 * 301.34660 * 13 12 11 16 16 C 1.53039 * 109.53918 * 61.37025 * 13 12 11 17 17 H 1.08996 * 109.49664 * 58.58096 * 16 13 12 18 18 C 1.52998 * 109.52556 * 178.66837 * 16 13 12 19 19 N 1.46497 * 109.46926 * 184.92041 * 18 16 13 20 20 C 1.36942 * 119.99704 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99956 * 359.97438 * 20 19 18 22 22 C 1.38810 * 119.99910 * 179.97438 * 20 19 18 23 23 N 1.31621 * 119.99889 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00269 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46972 * 89.99934 * 24 22 20 26 26 H 1.48500 * 109.47594 * 210.00142 * 24 22 20 27 27 H 1.48500 * 109.46827 * 330.00423 * 24 22 20 28 28 C 1.46923 * 120.63123 * 354.78528 * 10 8 6 29 29 C 1.52995 * 109.47023 * 60.00531 * 6 5 4 30 30 C 1.52990 * 109.47079 * 239.99422 * 2 1 3 31 31 H 1.08998 * 109.47310 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47236 * 300.00418 * 1 2 3 33 33 H 1.08996 * 109.47016 * 60.00252 * 1 2 3 34 34 H 1.08999 * 109.47212 * 300.00069 * 4 2 1 35 35 H 1.08998 * 109.47320 * 59.99774 * 4 2 1 36 36 H 1.08996 * 109.47016 * 180.02562 * 5 4 2 37 37 H 1.08999 * 109.46980 * 60.00473 * 5 4 2 38 38 H 1.08997 * 109.58554 * 353.41262 * 11 10 8 39 39 H 1.08999 * 109.59052 * 113.69681 * 11 10 8 40 40 H 1.08999 * 109.50138 * 65.31375 * 12 11 10 41 41 H 1.09004 * 109.49410 * 185.41151 * 12 11 10 42 42 H 1.09003 * 109.47318 * 180.02562 * 15 13 12 43 43 H 1.09000 * 109.47043 * 300.06774 * 15 13 12 44 44 H 1.08999 * 109.47227 * 60.06840 * 15 13 12 45 45 H 1.09005 * 109.46467 * 304.91403 * 18 16 13 46 46 H 1.08993 * 109.47306 * 64.91763 * 18 16 13 47 47 H 0.97001 * 120.00453 * 359.97438 * 19 18 16 48 48 H 0.97001 * 120.00085 * 179.97438 * 23 22 20 49 49 H 1.08995 * 109.58559 * 6.58522 * 28 10 8 50 50 H 1.08994 * 109.70725 * 246.22793 * 28 10 8 51 51 H 1.08998 * 109.47613 * 59.99836 * 29 6 5 52 52 H 1.08999 * 109.46966 * 179.97438 * 29 6 5 53 53 H 1.09002 * 109.47276 * 59.99981 * 30 2 1 54 54 H 1.08999 * 109.47686 * 300.00145 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7217 1.2490 6 6 4.0794 -1.4435 -0.0002 7 1 3.7157 -2.4709 0.0001 8 6 5.5864 -1.4434 -0.0008 9 8 6.1926 -0.5878 -0.6102 10 7 6.2606 -2.3943 0.6759 11 6 7.7252 -2.4765 0.5924 12 6 8.1163 -3.8987 0.1786 13 6 7.4850 -4.8998 1.1488 14 1 7.7819 -5.9111 0.8712 15 6 7.9622 -4.6012 2.5714 16 6 5.9605 -4.7809 1.0868 17 1 5.6221 -4.9692 0.0680 18 6 5.3289 -5.8046 2.0323 19 7 3.8717 -5.7708 1.8855 20 6 3.0884 -6.6060 2.6366 21 1 3.5449 -7.2898 3.3369 22 6 1.7076 -6.5737 2.4980 23 7 1.1512 -5.7399 1.6449 24 14 0.6390 -7.7134 3.5220 25 1 0.2780 -7.0413 4.7961 26 1 -0.5974 -8.0427 2.7684 27 1 1.3872 -8.9621 3.8157 28 6 5.5448 -3.3686 1.5108 29 6 3.5695 -0.7223 -1.2494 30 6 2.0400 -0.7213 -1.2491 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.6766 -0.2073 2.1393 35 1 1.6766 -1.7488 1.2494 36 1 3.9333 -1.2359 2.1388 37 1 3.9337 0.3058 1.2488 38 1 8.0892 -1.7667 -0.1504 39 1 8.1603 -2.2437 1.5642 40 1 7.7576 -4.0954 -0.8317 41 1 9.2013 -4.0001 0.2060 42 1 7.5130 -5.3144 3.2626 43 1 9.0480 -4.6859 2.6158 44 1 7.6650 -3.5901 2.8497 45 1 5.6958 -6.8011 1.7862 46 1 5.5962 -5.5626 3.0608 47 1 3.4616 -5.1564 1.2568 48 1 0.1863 -5.7175 1.5477 49 1 4.4703 -3.2475 1.3741 50 1 5.7997 -3.2120 2.5589 51 1 3.9332 0.3052 -1.2498 52 1 3.9328 -1.2362 -2.1393 53 1 1.6766 -0.2076 -2.1392 54 1 1.6767 -1.7490 -1.2491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133265976.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:25 Heat of formation + Delta-G solvation = -77.849405 kcal Electronic energy + Delta-G solvation = -29836.710692 eV Core-core repulsion = 26192.199395 eV Total energy + Delta-G solvation = -3644.511297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.80220 -39.89557 -38.67638 -36.47650 -34.90315 -33.97365 -33.23684 -31.74151 -31.41492 -28.90019 -27.77453 -27.09021 -25.69765 -24.89094 -23.64918 -23.10407 -22.21538 -20.98824 -20.43173 -19.39360 -18.88282 -18.14993 -17.23268 -16.73461 -16.50413 -15.99976 -15.75094 -15.60527 -15.33684 -15.22857 -15.17930 -15.05545 -14.54345 -14.45610 -14.24048 -13.84475 -13.76496 -13.47833 -13.17865 -13.15049 -12.98662 -12.90657 -12.83118 -12.65965 -12.46154 -12.33746 -12.12835 -12.04415 -12.03300 -11.89267 -11.81472 -11.73167 -11.60271 -11.36956 -11.26467 -11.16345 -10.95307 -10.88186 -10.53815 -9.58460 -8.92421 -7.89134 -5.16789 1.50265 1.50489 1.55070 1.58479 1.99288 2.59308 3.39100 3.44877 3.65636 3.69129 3.72633 3.84726 3.87126 4.02971 4.07183 4.13873 4.17733 4.24364 4.31613 4.42929 4.43603 4.46738 4.52569 4.56506 4.59928 4.62159 4.74914 4.76897 4.81619 4.84639 4.88289 4.90857 4.97706 4.99847 5.04830 5.07948 5.12970 5.13976 5.16141 5.22356 5.27812 5.29753 5.31186 5.38529 5.40192 5.41514 5.55294 5.57916 5.60026 5.63375 6.32291 6.34846 7.12039 7.39870 8.14430 8.38278 9.33239 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.007673 B = 0.005864 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3648.242085 B = 4773.953437 C = 7927.349749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.078 0.922 4 C -0.111 4.111 5 C -0.097 4.097 6 C -0.105 4.105 7 H 0.083 0.917 8 C 0.521 3.479 9 O -0.579 6.579 10 N -0.605 5.605 11 C 0.106 3.894 12 C -0.119 4.119 13 C -0.079 4.079 14 H 0.079 0.921 15 C -0.149 4.149 16 C -0.094 4.094 17 H 0.056 0.944 18 C 0.161 3.839 19 N -0.742 5.742 20 C -0.243 4.243 21 H 0.073 0.927 22 C -0.067 4.067 23 N -0.959 5.959 24 Si 0.963 3.037 25 H -0.288 1.288 26 H -0.298 1.298 27 H -0.273 1.273 28 C 0.121 3.879 29 C -0.091 4.091 30 C -0.111 4.111 31 H 0.042 0.958 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.054 0.946 41 H 0.102 0.898 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.055 0.945 45 H 0.020 0.980 46 H 0.032 0.968 47 H 0.374 0.626 48 H 0.249 0.751 49 H 0.078 0.922 50 H 0.078 0.922 51 H 0.069 0.931 52 H 0.055 0.945 53 H 0.078 0.922 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.785 9.918 -1.941 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 H 0.097 0.903 4 C -0.149 4.149 5 C -0.135 4.135 6 C -0.126 4.126 7 H 0.101 0.899 8 C 0.310 3.690 9 O -0.459 6.459 10 N -0.337 5.337 11 C -0.016 4.016 12 C -0.157 4.157 13 C -0.098 4.098 14 H 0.098 0.902 15 C -0.206 4.206 16 C -0.113 4.113 17 H 0.074 0.926 18 C 0.034 3.966 19 N -0.385 5.385 20 C -0.375 4.375 21 H 0.091 0.909 22 C -0.260 4.260 23 N -0.610 5.610 24 Si 0.793 3.207 25 H -0.215 1.215 26 H -0.225 1.225 27 H -0.198 1.198 28 C -0.002 4.002 29 C -0.129 4.129 30 C -0.148 4.148 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.120 0.880 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.037 0.963 46 H 0.050 0.950 47 H 0.206 0.794 48 H 0.058 0.942 49 H 0.096 0.904 50 H 0.096 0.904 51 H 0.088 0.912 52 H 0.073 0.927 53 H 0.097 0.903 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.102 10.214 -2.124 14.522 hybrid contribution -1.110 -0.809 0.220 1.391 sum 8.991 9.405 -1.903 13.150 Atomic orbital electron populations 1.21804 0.94678 1.01496 1.02261 1.21111 0.95903 0.99483 0.94041 0.90337 1.21554 0.94018 1.00717 0.98568 1.21384 0.96660 1.00240 0.95191 1.21354 0.90348 1.02009 0.98908 0.89855 1.20944 0.90637 0.80195 0.77212 1.90608 1.71083 1.38398 1.45837 1.48225 1.07942 1.30553 1.46944 1.21755 0.78960 0.98118 1.02721 1.21891 1.02043 0.93209 0.98542 1.21043 0.92188 0.99900 0.96681 0.90233 1.21950 1.01800 1.01700 0.95122 1.21567 0.96710 0.94013 0.99038 0.92582 1.20819 0.83146 0.95799 0.96799 1.42552 1.01422 1.46060 1.48501 1.19546 0.88910 1.13585 1.15426 0.90930 1.25404 0.97886 1.01487 1.01225 1.69783 1.09660 1.41293 1.40244 0.85296 0.78377 0.79020 0.77987 1.21547 1.22509 1.19815 1.21783 0.96898 0.87198 0.94317 1.21278 0.95981 1.00583 0.95090 1.21576 0.94009 1.00712 0.98521 0.93872 0.92115 0.91584 0.90866 0.93270 0.92043 0.91145 0.90326 0.89860 0.92723 0.88003 0.92735 0.90749 0.92630 0.96255 0.95020 0.79376 0.94174 0.90418 0.90406 0.91245 0.92651 0.90291 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.19 71.98 0.66 -2.53 16 2 C -0.09 -2.05 2.72 -10.80 -0.03 -2.08 16 3 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 4 C -0.11 -2.99 5.20 30.60 0.16 -2.83 16 5 C -0.10 -2.64 4.99 30.59 0.15 -2.49 16 6 C -0.10 -3.11 1.66 -11.54 -0.02 -3.13 16 7 H 0.08 2.77 6.52 -2.39 -0.02 2.76 16 8 C 0.52 16.45 6.80 87.66 0.60 17.04 16 9 O -0.58 -20.95 15.52 -3.05 -0.05 -21.00 16 10 N -0.61 -17.01 2.97 -818.89 -2.43 -19.44 16 11 C 0.11 2.47 5.94 86.36 0.51 2.99 16 12 C -0.12 -2.41 5.63 30.67 0.17 -2.23 16 13 C -0.08 -1.78 2.71 -10.77 -0.03 -1.80 16 14 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 15 C -0.15 -2.93 8.12 71.98 0.58 -2.35 16 16 C -0.09 -2.79 2.15 -10.71 -0.02 -2.81 16 17 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 18 C 0.16 5.92 5.19 86.38 0.45 6.37 16 19 N -0.74 -35.37 5.38 -343.46 -1.85 -37.22 16 20 C -0.24 -12.97 9.99 84.03 0.84 -12.13 16 21 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 22 C -0.07 -3.70 5.50 84.86 0.47 -3.24 16 23 N -0.96 -55.96 13.06 21.65 0.28 -55.68 16 24 Si 0.96 44.90 29.55 68.60 2.03 46.93 16 25 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 26 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 27 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 28 C 0.12 3.55 4.42 86.37 0.38 3.94 16 29 C -0.09 -2.51 4.73 30.58 0.14 -2.36 16 30 C -0.11 -2.76 5.20 30.57 0.16 -2.60 16 31 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.06 1.73 7.28 -2.39 -0.02 1.71 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 2.00 7.04 -2.39 -0.02 1.98 16 39 H 0.08 1.68 6.70 -2.39 -0.02 1.66 16 40 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16 41 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.05 1.18 6.58 -2.39 -0.02 1.17 16 43 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.05 1.12 4.98 -2.39 -0.01 1.11 16 45 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 46 H 0.03 1.14 6.73 -2.39 -0.02 1.12 16 47 H 0.37 18.92 6.89 -92.71 -0.64 18.28 16 48 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 49 H 0.08 2.65 4.27 -2.39 -0.01 2.64 16 50 H 0.08 2.20 6.70 -2.39 -0.02 2.19 16 51 H 0.07 1.91 7.87 -2.39 -0.02 1.90 16 52 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 53 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 54 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -62.57 395.93 3.38 -59.19 By element: Atomic # 1 Polarization: 39.26 SS G_CDS: 0.22 Total: 39.48 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 5.18 Total: -12.26 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -4.00 Total: -112.34 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.05 Total: -21.00 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -62.57 3.38 -59.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133265976.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.662 kcal (2) G-P(sol) polarization free energy of solvation -62.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds