Wall clock time and date at job start Tue Mar 31 2020 15:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47052 * 2 1 4 4 C 1.53002 * 109.46764 * 119.99273 * 2 1 3 5 5 C 1.53005 * 109.47039 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.46720 * 300.00213 * 5 4 2 7 7 H 1.08998 * 109.46761 * 299.99906 * 6 5 4 8 8 C 1.50707 * 109.46854 * 180.02562 * 6 5 4 9 9 O 1.21280 * 120.00024 * 335.40994 * 8 6 5 10 10 N 1.34774 * 119.99744 * 155.41059 * 8 6 5 11 11 C 1.46924 * 120.62852 * 184.92196 * 10 8 6 12 12 C 1.53630 * 108.54414 * 126.36803 * 11 10 8 13 13 C 1.53036 * 109.23583 * 54.85777 * 12 11 10 14 14 H 1.09003 * 109.45042 * 58.52850 * 13 12 11 15 15 C 1.53002 * 109.45826 * 178.49093 * 13 12 11 16 16 C 1.53041 * 109.54108 * 298.50838 * 13 12 11 17 17 H 1.08995 * 109.49932 * 301.41971 * 16 13 12 18 18 C 1.53006 * 109.49812 * 181.31899 * 16 13 12 19 19 N 1.46501 * 109.46792 * 175.16667 * 18 16 13 20 20 C 1.36940 * 119.99851 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99511 * 359.97438 * 20 19 18 22 22 C 1.38807 * 120.00251 * 179.97438 * 20 19 18 23 23 N 1.31615 * 120.00221 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99751 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47235 * 90.00015 * 24 22 20 26 26 H 1.48500 * 109.47184 * 209.99557 * 24 22 20 27 27 H 1.48495 * 109.47220 * 330.00088 * 24 22 20 28 28 C 1.46924 * 120.63368 * 5.20294 * 10 8 6 29 29 C 1.52995 * 109.47581 * 59.99786 * 6 5 4 30 30 C 1.52992 * 109.47425 * 239.99630 * 2 1 3 31 31 H 1.08994 * 109.47216 * 300.00835 * 1 2 3 32 32 H 1.09001 * 109.46746 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46563 * 60.00868 * 1 2 3 34 34 H 1.09003 * 109.46954 * 300.00040 * 4 2 1 35 35 H 1.09001 * 109.47235 * 60.00611 * 4 2 1 36 36 H 1.08998 * 109.47427 * 59.99712 * 5 4 2 37 37 H 1.08999 * 109.47189 * 180.02562 * 5 4 2 38 38 H 1.09000 * 109.59047 * 246.20190 * 11 10 8 39 39 H 1.09006 * 109.58712 * 6.62977 * 11 10 8 40 40 H 1.08999 * 109.63260 * 294.87314 * 12 11 10 41 41 H 1.08997 * 109.46002 * 174.73882 * 12 11 10 42 42 H 1.09002 * 109.47170 * 180.02562 * 15 13 12 43 43 H 1.08998 * 109.47148 * 300.06789 * 15 13 12 44 44 H 1.08999 * 109.46829 * 60.06776 * 15 13 12 45 45 H 1.09001 * 109.47238 * 295.16417 * 18 16 13 46 46 H 1.08995 * 109.47110 * 55.16530 * 18 16 13 47 47 H 0.96995 * 120.00446 * 359.97438 * 19 18 16 48 48 H 0.97004 * 120.00114 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.58795 * 353.37864 * 28 10 8 50 50 H 1.09004 * 109.58709 * 113.79363 * 28 10 8 51 51 H 1.09004 * 109.46471 * 59.99795 * 29 6 5 52 52 H 1.08995 * 109.47538 * 179.97438 * 29 6 5 53 53 H 1.09001 * 109.47121 * 299.99725 * 30 2 1 54 54 H 1.08992 * 109.47716 * 59.99742 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5700 -0.7206 1.2498 6 6 4.0805 -1.4416 0.0005 7 1 3.7175 -2.4694 0.0005 8 6 5.5876 -1.4417 0.0012 9 8 6.1937 -0.5858 0.6102 10 7 6.2617 -2.3929 -0.6750 11 6 7.7267 -2.4709 -0.5967 12 6 8.1185 -3.8963 -0.1785 13 6 7.4870 -4.8978 -1.1482 14 1 7.8263 -4.6848 -2.1620 15 6 7.9046 -6.3172 -0.7587 16 6 5.9625 -4.7796 -1.0854 17 1 5.6246 -4.9679 -0.0664 18 6 5.3314 -5.8037 -2.0309 19 7 3.8741 -5.7697 -1.8853 20 6 3.0913 -6.6058 -2.6358 21 1 3.5483 -7.2901 -3.3354 22 6 1.7105 -6.5740 -2.4975 23 7 0.9581 -7.3773 -3.2192 24 14 0.9201 -5.3910 -1.2870 25 1 0.6327 -4.1035 -1.9690 26 1 -0.3469 -5.9757 -0.7790 27 1 1.8462 -5.1533 -0.1508 28 6 5.5459 -3.3677 -1.5094 29 6 3.5705 -0.7206 -1.2488 30 6 2.0401 -0.7213 -1.2491 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3632 0.5137 -0.8901 34 1 1.6766 -0.2071 2.1393 35 1 1.6767 -1.7488 1.2494 36 1 3.9331 0.3072 1.2498 37 1 3.9333 -1.2347 2.1396 38 1 8.1575 -2.2417 -1.5714 39 1 8.0916 -1.7583 0.1431 40 1 7.7602 -4.0930 0.8320 41 1 9.2034 -3.9977 -0.2062 42 1 7.4554 -7.0306 -1.4495 43 1 8.9904 -6.4016 -0.8034 44 1 7.5650 -6.5305 0.2548 45 1 5.5995 -5.5622 -3.0595 46 1 5.6981 -6.8001 -1.7843 47 1 3.4637 -5.1554 -1.2568 48 1 -0.0069 -7.3548 -3.1228 49 1 4.4714 -3.2470 -1.3721 50 1 5.8024 -3.2101 -2.5570 51 1 3.9336 0.3072 -1.2486 52 1 3.9346 -1.2340 -2.1387 53 1 1.6768 -1.7490 -1.2490 54 1 1.6768 -0.2077 -2.1391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133265977.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:28 Heat of formation + Delta-G solvation = -78.583675 kcal Electronic energy + Delta-G solvation = -29891.850815 eV Core-core repulsion = 26247.307678 eV Total energy + Delta-G solvation = -3644.543137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.76254 -39.81278 -38.72765 -36.61374 -35.14369 -34.05101 -33.45192 -31.88390 -31.70672 -29.49177 -27.73130 -27.38710 -24.69430 -24.58206 -23.70466 -22.91614 -22.28903 -21.31892 -20.69579 -19.96712 -19.58301 -18.15672 -17.25899 -16.69519 -16.54463 -15.92487 -15.80691 -15.48270 -15.36047 -15.26743 -15.24249 -14.85685 -14.64946 -14.48021 -14.32690 -13.99521 -13.81552 -13.58714 -13.41286 -13.24434 -13.18292 -13.14249 -12.86475 -12.65324 -12.61973 -12.40701 -12.19435 -12.11952 -12.07185 -11.94014 -11.82626 -11.78279 -11.66301 -11.40262 -11.28890 -11.16887 -11.01228 -10.94296 -10.58989 -9.67982 -9.25708 -8.00623 -5.33522 1.36453 1.40191 1.46799 1.51849 1.94789 2.48809 3.30968 3.33959 3.49829 3.62138 3.66196 3.79341 3.81115 3.86431 3.96996 4.07174 4.09037 4.15232 4.27587 4.33754 4.38599 4.42820 4.49676 4.50554 4.54613 4.59510 4.73125 4.76064 4.78067 4.79564 4.83153 4.88888 4.92788 4.94323 4.97522 5.02839 5.07384 5.09732 5.11105 5.17198 5.18312 5.22251 5.23906 5.33997 5.35570 5.44518 5.52717 5.54883 5.55670 5.79219 6.22778 6.31118 7.08529 7.10047 7.85928 8.04189 9.20872 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.007536 B = 0.006978 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3714.711832 B = 4011.805090 C = 7226.443969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 H 0.080 0.920 4 C -0.114 4.114 5 C -0.093 4.093 6 C -0.110 4.110 7 H 0.086 0.914 8 C 0.521 3.479 9 O -0.577 6.577 10 N -0.607 5.607 11 C 0.107 3.893 12 C -0.117 4.117 13 C -0.078 4.078 14 H 0.084 0.916 15 C -0.147 4.147 16 C -0.097 4.097 17 H 0.064 0.936 18 C 0.160 3.840 19 N -0.756 5.756 20 C -0.229 4.229 21 H 0.058 0.942 22 C -0.061 4.061 23 N -0.983 5.983 24 Si 0.941 3.059 25 H -0.266 1.266 26 H -0.301 1.301 27 H -0.254 1.254 28 C 0.114 3.886 29 C -0.102 4.102 30 C -0.117 4.117 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.100 0.900 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.048 0.952 45 H 0.031 0.969 46 H 0.035 0.965 47 H 0.363 0.637 48 H 0.256 0.744 49 H 0.080 0.920 50 H 0.082 0.918 51 H 0.072 0.928 52 H 0.066 0.934 53 H 0.048 0.952 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.551 14.813 7.551 19.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 H 0.099 0.901 4 C -0.151 4.151 5 C -0.131 4.131 6 C -0.131 4.131 7 H 0.104 0.896 8 C 0.310 3.690 9 O -0.457 6.457 10 N -0.338 5.338 11 C -0.015 4.015 12 C -0.155 4.155 13 C -0.097 4.097 14 H 0.102 0.898 15 C -0.204 4.204 16 C -0.117 4.117 17 H 0.083 0.917 18 C 0.034 3.966 19 N -0.402 5.402 20 C -0.360 4.360 21 H 0.076 0.924 22 C -0.252 4.252 23 N -0.634 5.634 24 Si 0.769 3.231 25 H -0.192 1.192 26 H -0.228 1.228 27 H -0.178 1.178 28 C -0.008 4.008 29 C -0.140 4.140 30 C -0.155 4.155 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.118 0.882 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.049 0.951 46 H 0.053 0.947 47 H 0.197 0.803 48 H 0.065 0.935 49 H 0.098 0.902 50 H 0.100 0.900 51 H 0.091 0.909 52 H 0.085 0.915 53 H 0.067 0.933 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.870 15.096 7.710 20.137 hybrid contribution -1.023 -0.110 0.380 1.097 sum 9.847 14.987 8.090 19.673 Atomic orbital electron populations 1.21841 0.94694 1.01551 1.02484 1.21149 0.95888 0.99788 0.94024 0.90147 1.21634 0.94083 1.00797 0.98623 1.21310 0.95888 1.00793 0.95117 1.21430 0.90548 1.02075 0.99088 0.89600 1.20905 0.90567 0.80204 0.77288 1.90622 1.71046 1.38303 1.45741 1.48243 1.08008 1.30546 1.47043 1.21838 0.78794 0.98132 1.02746 1.21990 1.01997 0.92759 0.98775 1.21056 0.92208 0.95967 1.00463 0.89784 1.21864 1.01863 0.95449 1.01209 1.21661 0.96917 0.93698 0.99398 0.91742 1.20880 0.81847 0.96939 0.96929 1.42732 1.02871 1.46109 1.48508 1.19017 0.88872 1.13117 1.14964 0.92376 1.25431 0.96682 1.01377 1.01753 1.69876 1.04498 1.43248 1.45805 0.85610 0.77876 0.79597 0.80053 1.19187 1.22841 1.17841 1.21866 0.97003 0.87226 0.94733 1.21451 0.96453 1.00727 0.95338 1.21646 0.94232 1.00669 0.98937 0.91451 0.93784 0.92057 0.90085 0.92739 0.91177 0.92355 0.89989 0.90108 0.92538 0.88164 0.92855 0.90861 0.93308 0.95056 0.94722 0.80345 0.93475 0.90198 0.90017 0.90904 0.91493 0.93322 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.19 71.98 0.66 -2.12 16 2 C -0.09 -1.81 2.72 -10.79 -0.03 -1.84 16 3 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 4 C -0.11 -2.39 5.20 30.60 0.16 -2.23 16 5 C -0.09 -2.20 4.73 30.60 0.14 -2.06 16 6 C -0.11 -2.81 1.66 -11.54 -0.02 -2.83 16 7 H 0.09 2.33 6.52 -2.39 -0.02 2.32 16 8 C 0.52 14.67 6.81 87.66 0.60 15.27 16 9 O -0.58 -19.21 15.52 -3.03 -0.05 -19.26 16 10 N -0.61 -15.11 2.97 -818.06 -2.43 -17.54 16 11 C 0.11 2.21 6.45 86.51 0.56 2.77 16 12 C -0.12 -2.10 5.38 30.82 0.17 -1.94 16 13 C -0.08 -1.58 2.22 -10.77 -0.02 -1.60 16 14 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 15 C -0.15 -2.90 8.82 71.98 0.63 -2.26 16 16 C -0.10 -2.57 1.92 -10.72 -0.02 -2.59 16 17 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 18 C 0.16 5.50 5.41 86.38 0.47 5.97 16 19 N -0.76 -33.10 5.18 -343.44 -1.78 -34.87 16 20 C -0.23 -12.58 10.47 84.03 0.88 -11.69 16 21 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 22 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 23 N -0.98 -62.03 13.97 21.65 0.30 -61.73 16 24 Si 0.94 43.83 27.73 68.60 1.90 45.73 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 27 H -0.25 -10.66 6.52 99.48 0.65 -10.01 16 28 C 0.11 2.94 4.89 86.36 0.42 3.36 16 29 C -0.10 -2.38 4.99 30.61 0.15 -2.23 16 30 C -0.12 -2.70 5.21 30.61 0.16 -2.54 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.71 7.87 -2.39 -0.02 1.69 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 1.86 7.04 -2.38 -0.02 1.84 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.05 1.20 6.30 -2.39 -0.02 1.18 16 43 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.03 1.23 6.15 -2.39 -0.01 1.22 16 47 H 0.36 15.22 4.75 -92.71 -0.44 14.78 16 48 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 49 H 0.08 2.26 4.27 -2.39 -0.01 2.25 16 50 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 51 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 52 H 0.07 1.59 7.29 -2.39 -0.02 1.57 16 53 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 54 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -67.33 398.92 3.68 -63.65 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: 0.35 Total: 35.62 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 5.38 Total: -11.61 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -3.90 Total: -114.14 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.05 Total: -19.26 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.90 Total: 45.73 kcal Total: -67.33 3.68 -63.65 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133265977.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.930 kcal (2) G-P(sol) polarization free energy of solvation -67.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds