Wall clock time and date at job start Tue Mar 31 2020 15:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47547 * 2 1 4 4 C 1.53002 * 109.46974 * 119.99513 * 2 1 3 5 5 C 1.52998 * 109.47306 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47458 * 300.00485 * 5 4 2 7 7 H 1.09001 * 109.47252 * 299.99798 * 6 5 4 8 8 C 1.50699 * 109.47488 * 179.97438 * 6 5 4 9 9 O 1.21281 * 120.00009 * 264.58425 * 8 6 5 10 10 N 1.34774 * 120.00291 * 84.58197 * 8 6 5 11 11 C 1.46918 * 120.63643 * 174.79273 * 10 8 6 12 12 C 1.53194 * 108.78045 * 233.63217 * 11 10 8 13 13 C 1.53042 * 109.33446 * 305.34825 * 12 11 10 14 14 H 1.08995 * 109.45824 * 301.35676 * 13 12 11 15 15 C 1.52999 * 109.45516 * 181.40176 * 13 12 11 16 16 C 1.53102 * 109.50398 * 61.34581 * 13 12 11 17 17 H 1.09001 * 109.51392 * 58.62843 * 16 13 12 18 18 C 1.53005 * 109.48660 * 178.69590 * 16 13 12 19 19 N 1.46498 * 109.47091 * 184.85183 * 18 16 13 20 20 C 1.36931 * 120.00138 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00048 * 0.02562 * 20 19 18 22 22 C 1.38813 * 120.00336 * 180.02562 * 20 19 18 23 23 N 1.31621 * 119.99637 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00210 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46981 * 59.99877 * 24 22 20 26 26 H 1.48499 * 109.47089 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.46710 * 300.00230 * 24 22 20 28 28 C 1.46929 * 120.62859 * 354.81566 * 10 8 6 29 29 C 1.52996 * 109.47023 * 59.99706 * 6 5 4 30 30 C 1.53000 * 109.47476 * 239.99806 * 2 1 3 31 31 H 1.09001 * 109.47037 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47166 * 300.00298 * 1 2 3 33 33 H 1.09005 * 109.46634 * 59.99888 * 1 2 3 34 34 H 1.08995 * 109.47760 * 300.00405 * 4 2 1 35 35 H 1.09001 * 109.46734 * 60.00432 * 4 2 1 36 36 H 1.08999 * 109.47646 * 180.02562 * 5 4 2 37 37 H 1.09002 * 109.47234 * 60.00476 * 5 4 2 38 38 H 1.09005 * 109.59037 * 113.84187 * 11 10 8 39 39 H 1.09006 * 109.70125 * 353.48904 * 11 10 8 40 40 H 1.09003 * 109.49542 * 65.31093 * 12 11 10 41 41 H 1.08997 * 109.49799 * 185.37675 * 12 11 10 42 42 H 1.08997 * 109.47660 * 59.99736 * 15 13 12 43 43 H 1.09007 * 109.47250 * 180.02562 * 15 13 12 44 44 H 1.09006 * 109.46855 * 299.99408 * 15 13 12 45 45 H 1.08993 * 109.47098 * 304.85643 * 18 16 13 46 46 H 1.09001 * 109.46819 * 64.85812 * 18 16 13 47 47 H 0.96999 * 120.00034 * 0.02562 * 19 18 16 48 48 H 0.97007 * 119.99396 * 179.97438 * 23 22 20 49 49 H 1.09001 * 109.58600 * 246.15975 * 28 10 8 50 50 H 1.09002 * 109.58778 * 6.43832 * 28 10 8 51 51 H 1.08996 * 109.47442 * 60.00105 * 29 6 5 52 52 H 1.09009 * 109.47432 * 179.97438 * 29 6 5 53 53 H 1.08997 * 109.47043 * 60.00178 * 30 2 1 54 54 H 1.09001 * 109.47252 * 300.00193 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5699 -0.7218 1.2491 6 6 4.0795 -1.4434 -0.0001 7 1 3.7159 -2.4709 0.0001 8 6 5.5865 -1.4434 -0.0007 9 8 6.1927 -0.5877 -0.6098 10 7 6.2607 -2.3944 0.6758 11 6 7.7252 -2.4763 0.5927 12 6 8.1169 -3.8982 0.1784 13 6 7.4860 -4.9004 1.1478 14 1 7.8256 -4.6880 2.1615 15 6 7.9040 -6.3194 0.7573 16 6 5.9609 -4.7812 1.0855 17 1 5.6223 -4.9693 0.0666 18 6 5.3298 -5.8055 2.0307 19 7 3.8725 -5.7711 1.8855 20 6 3.0896 -6.6065 2.6365 21 1 3.5465 -7.2906 3.3363 22 6 1.7087 -6.5743 2.4986 23 7 1.1519 -5.7410 1.6454 24 14 0.6407 -7.7136 3.5237 25 1 0.8637 -7.4368 4.9655 26 1 -0.7883 -7.4853 3.1906 27 1 0.9978 -9.1246 3.2295 28 6 5.5449 -3.3693 1.5100 29 6 3.5696 -0.7222 -1.2494 30 6 2.0401 -0.7213 -1.2492 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.6766 -0.2074 2.1393 35 1 1.6766 -1.7488 1.2493 36 1 3.9333 -1.2359 2.1389 37 1 3.9337 0.3058 1.2489 38 1 8.1599 -2.2463 1.5655 39 1 8.0916 -1.7658 -0.1484 40 1 7.7585 -4.0945 -0.8321 41 1 9.2019 -3.9992 0.2056 42 1 8.9897 -6.4040 0.8027 43 1 7.4544 -7.0335 1.4474 44 1 7.5650 -6.5320 -0.2567 45 1 5.6962 -6.8019 1.7836 46 1 5.5982 -5.5644 3.0593 47 1 3.4621 -5.1564 1.2572 48 1 0.1869 -5.7187 1.5487 49 1 5.8017 -3.2121 2.5576 50 1 4.4702 -3.2466 1.3749 51 1 3.9332 0.3053 -1.2496 52 1 3.9330 -1.2360 -2.1394 53 1 1.6768 -0.2075 -2.1392 54 1 1.6768 -1.7490 -1.2492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133265978.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:33 Heat of formation + Delta-G solvation = -80.632598 kcal Electronic energy + Delta-G solvation = -29683.528505 eV Core-core repulsion = 26038.896520 eV Total energy + Delta-G solvation = -3644.631985 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.71938 -39.75531 -38.66528 -36.44826 -35.10437 -33.97335 -33.27943 -31.74986 -31.40064 -29.42469 -27.68210 -27.16708 -24.96690 -24.55587 -23.64936 -22.93207 -22.20675 -21.19850 -20.62435 -19.92630 -19.07907 -18.09958 -17.22304 -16.70177 -16.49110 -15.77570 -15.59610 -15.53467 -15.27947 -15.25352 -15.19397 -14.93087 -14.53711 -14.38881 -14.20441 -13.94014 -13.75300 -13.51681 -13.19045 -13.15356 -13.05603 -12.97787 -12.77226 -12.64574 -12.58383 -12.34947 -12.19526 -12.06175 -12.03110 -11.91550 -11.80362 -11.75865 -11.60877 -11.34114 -11.25226 -11.11525 -10.95324 -10.86886 -10.54210 -9.64806 -8.91393 -7.88594 -5.16086 1.50455 1.51594 1.54746 1.57551 1.98869 2.59719 3.38998 3.45110 3.64646 3.68873 3.72907 3.83729 3.84591 4.00140 4.07751 4.14247 4.17749 4.24826 4.31100 4.42897 4.45201 4.49049 4.54053 4.56454 4.59981 4.64086 4.77674 4.80612 4.82744 4.83989 4.88023 4.90530 4.95766 4.99260 5.04557 5.06698 5.09755 5.13929 5.14385 5.21730 5.25753 5.27781 5.30124 5.39393 5.41457 5.45532 5.54771 5.56856 5.59158 5.63345 6.32701 6.34067 7.11542 7.40322 8.15136 8.38955 9.33604 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.007504 B = 0.005858 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3730.498552 B = 4778.244668 C = 8048.457499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.078 0.922 4 C -0.111 4.111 5 C -0.097 4.097 6 C -0.105 4.105 7 H 0.083 0.917 8 C 0.521 3.479 9 O -0.579 6.579 10 N -0.607 5.607 11 C 0.106 3.894 12 C -0.118 4.118 13 C -0.078 4.078 14 H 0.083 0.917 15 C -0.145 4.145 16 C -0.092 4.092 17 H 0.056 0.944 18 C 0.158 3.842 19 N -0.742 5.742 20 C -0.243 4.243 21 H 0.073 0.927 22 C -0.067 4.067 23 N -0.960 5.960 24 Si 0.963 3.037 25 H -0.280 1.280 26 H -0.297 1.297 27 H -0.282 1.282 28 C 0.119 3.881 29 C -0.091 4.091 30 C -0.111 4.111 31 H 0.042 0.958 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.054 0.946 44 H 0.045 0.955 45 H 0.030 0.970 46 H 0.025 0.975 47 H 0.374 0.626 48 H 0.249 0.751 49 H 0.076 0.924 50 H 0.080 0.920 51 H 0.069 0.931 52 H 0.055 0.945 53 H 0.079 0.921 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.739 9.424 -2.480 13.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 H 0.097 0.903 4 C -0.148 4.148 5 C -0.135 4.135 6 C -0.126 4.126 7 H 0.102 0.898 8 C 0.310 3.690 9 O -0.459 6.459 10 N -0.338 5.338 11 C -0.016 4.016 12 C -0.156 4.156 13 C -0.097 4.097 14 H 0.102 0.898 15 C -0.202 4.202 16 C -0.112 4.112 17 H 0.074 0.926 18 C 0.032 3.968 19 N -0.385 5.385 20 C -0.375 4.375 21 H 0.090 0.910 22 C -0.260 4.260 23 N -0.610 5.610 24 Si 0.793 3.207 25 H -0.206 1.206 26 H -0.224 1.224 27 H -0.208 1.208 28 C -0.003 4.003 29 C -0.129 4.129 30 C -0.148 4.148 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.120 0.880 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.048 0.952 46 H 0.042 0.958 47 H 0.206 0.794 48 H 0.058 0.942 49 H 0.094 0.906 50 H 0.098 0.902 51 H 0.088 0.912 52 H 0.073 0.927 53 H 0.097 0.903 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.048 9.730 -2.663 14.238 hybrid contribution -1.104 -0.778 0.261 1.375 sum 8.944 8.951 -2.402 12.880 Atomic orbital electron populations 1.21804 0.94679 1.01495 1.02262 1.21113 0.95902 0.99484 0.94043 0.90340 1.21553 0.94007 1.00720 0.98566 1.21386 0.96666 1.00240 0.95190 1.21356 0.90329 1.02022 0.98917 0.89840 1.20944 0.90651 0.80179 0.77191 1.90606 1.71087 1.38390 1.45832 1.48247 1.07978 1.30565 1.47018 1.21741 0.78913 0.98182 1.02731 1.21923 1.02026 0.92865 0.98761 1.21074 0.92306 0.95996 1.00320 0.89837 1.21850 1.01839 0.95410 1.01102 1.21596 0.96638 0.93798 0.99133 0.92565 1.20871 0.83179 0.96440 0.96335 1.42533 1.01407 1.45995 1.48551 1.19509 0.88914 1.13599 1.15516 0.90950 1.25403 0.97880 1.01464 1.01240 1.69780 1.09677 1.41268 1.40265 0.85372 0.77721 0.78913 0.78693 1.20589 1.22375 1.20845 1.21793 0.97094 0.87239 0.94188 1.21280 0.95988 1.00584 0.95088 1.21578 0.94001 1.00717 0.98524 0.93872 0.92107 0.91590 0.90861 0.93265 0.92025 0.91154 0.90035 0.90132 0.92785 0.87993 0.90735 0.92747 0.93550 0.95246 0.95758 0.79393 0.94174 0.90616 0.90221 0.91246 0.92651 0.90288 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.19 71.98 0.66 -2.53 16 2 C -0.09 -2.05 2.72 -10.79 -0.03 -2.08 16 3 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 4 C -0.11 -2.98 5.20 30.59 0.16 -2.82 16 5 C -0.10 -2.65 4.99 30.59 0.15 -2.49 16 6 C -0.11 -3.11 1.66 -11.54 -0.02 -3.13 16 7 H 0.08 2.77 6.53 -2.39 -0.02 2.76 16 8 C 0.52 16.47 6.80 87.66 0.60 17.07 16 9 O -0.58 -20.96 15.53 -3.03 -0.05 -21.01 16 10 N -0.61 -17.10 2.97 -818.91 -2.43 -19.53 16 11 C 0.11 2.46 6.41 86.36 0.55 3.02 16 12 C -0.12 -2.38 5.36 30.67 0.16 -2.21 16 13 C -0.08 -1.75 2.23 -10.75 -0.02 -1.77 16 14 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 15 C -0.14 -3.07 8.82 71.98 0.63 -2.44 16 16 C -0.09 -2.74 1.92 -10.70 -0.02 -2.76 16 17 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 18 C 0.16 5.81 5.41 86.38 0.47 6.27 16 19 N -0.74 -35.30 5.38 -343.46 -1.85 -37.15 16 20 C -0.24 -13.00 9.99 84.03 0.84 -12.16 16 21 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 22 C -0.07 -3.69 5.50 84.86 0.47 -3.23 16 23 N -0.96 -55.96 13.06 21.65 0.28 -55.67 16 24 Si 0.96 44.88 29.55 68.60 2.03 46.91 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 26 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 27 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 28 C 0.12 3.53 4.90 86.36 0.42 3.95 16 29 C -0.09 -2.51 4.73 30.58 0.14 -2.37 16 30 C -0.11 -2.76 5.20 30.58 0.16 -2.60 16 31 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.06 1.73 7.28 -2.39 -0.02 1.72 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 1.62 8.14 -2.38 -0.02 1.61 16 39 H 0.08 2.04 7.05 -2.38 -0.02 2.02 16 40 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.05 1.27 6.30 -2.38 -0.02 1.26 16 44 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 45 H 0.03 1.09 6.15 -2.39 -0.01 1.08 16 46 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.37 18.90 6.90 -92.71 -0.64 18.26 16 48 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 49 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 50 H 0.08 2.71 4.27 -2.39 -0.01 2.70 16 51 H 0.07 1.91 7.87 -2.39 -0.02 1.90 16 52 H 0.05 1.56 8.14 -2.38 -0.02 1.55 16 53 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 54 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -62.54 402.02 3.52 -59.02 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: 0.21 Total: 39.71 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 5.33 Total: -12.27 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -4.00 Total: -112.35 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.05 Total: -21.01 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -62.54 3.52 -59.02 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133265978.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.615 kcal (2) G-P(sol) polarization free energy of solvation -62.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds