Wall clock time and date at job start Tue Mar 31 2020 15:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 109.47043 * 2 1 4 4 C 1.53003 * 109.47191 * 119.99733 * 2 1 3 5 5 C 1.53001 * 109.47247 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.46847 * 300.00089 * 5 4 2 7 7 H 1.08999 * 109.46773 * 299.99771 * 6 5 4 8 8 C 1.50696 * 109.46972 * 180.02562 * 6 5 4 9 9 O 1.21286 * 120.00066 * 257.18518 * 8 6 5 10 10 N 1.34779 * 120.00117 * 77.17892 * 8 6 5 11 11 C 1.46921 * 120.63152 * 353.72814 * 10 8 6 12 12 C 1.53195 * 108.77604 * 233.62902 * 11 10 8 13 13 C 1.53041 * 109.31055 * 305.36198 * 12 11 10 14 14 C 1.53044 * 109.52482 * 61.37492 * 13 12 11 15 15 C 1.46929 * 120.62810 * 173.74638 * 10 8 6 16 16 H 1.09001 * 109.58580 * 246.29978 * 15 10 8 17 17 C 1.52994 * 109.58864 * 6.58883 * 15 10 8 18 18 N 1.46499 * 109.47034 * 181.07125 * 17 15 10 19 19 C 1.46503 * 119.99574 * 264.20122 * 18 17 15 20 20 C 1.36928 * 120.00547 * 84.20626 * 18 17 15 21 21 H 1.08003 * 120.00050 * 31.95859 * 20 18 17 22 22 C 1.38812 * 120.00224 * 211.96129 * 20 18 17 23 23 N 1.31621 * 120.00137 * 6.27997 * 22 20 18 24 24 Si 1.86802 * 120.00295 * 186.27967 * 22 20 18 25 25 H 1.48504 * 109.47100 * 5.00000 * 24 22 20 26 26 H 1.48497 * 109.47445 * 125.00143 * 24 22 20 27 27 H 1.48499 * 109.47256 * 245.00385 * 24 22 20 28 28 C 1.52997 * 109.47025 * 60.00078 * 6 5 4 29 29 C 1.52998 * 109.47357 * 239.99919 * 2 1 3 30 30 H 1.08996 * 109.47404 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47761 * 300.00188 * 1 2 3 32 32 H 1.09006 * 109.47484 * 60.00331 * 1 2 3 33 33 H 1.09004 * 109.47039 * 299.99926 * 4 2 1 34 34 H 1.08996 * 109.46621 * 59.99918 * 4 2 1 35 35 H 1.08993 * 109.46924 * 180.02562 * 5 4 2 36 36 H 1.08999 * 109.47247 * 59.99570 * 5 4 2 37 37 H 1.08999 * 109.58875 * 113.83966 * 11 10 8 38 38 H 1.09006 * 109.58686 * 353.41435 * 11 10 8 39 39 H 1.08994 * 109.49337 * 185.41272 * 12 11 10 40 40 H 1.08997 * 109.52287 * 65.33213 * 12 11 10 41 41 H 1.09003 * 109.45558 * 181.38523 * 13 12 11 42 42 H 1.08996 * 109.45874 * 301.36169 * 13 12 11 43 43 H 1.09002 * 109.49729 * 58.57352 * 14 13 12 44 44 H 1.09003 * 109.49547 * 178.67757 * 14 13 12 45 45 H 1.09006 * 109.46886 * 301.06812 * 17 15 10 46 46 H 1.08995 * 109.47754 * 61.06462 * 17 15 10 47 47 H 1.09003 * 109.47145 * 94.83085 * 19 18 17 48 48 H 1.08997 * 109.47097 * 214.83393 * 19 18 17 49 49 H 1.08998 * 109.47635 * 334.83729 * 19 18 17 50 50 H 0.96991 * 120.00464 * 179.97438 * 23 22 20 51 51 H 1.08999 * 109.47595 * 60.00197 * 28 6 5 52 52 H 1.09004 * 109.46794 * 180.02562 * 28 6 5 53 53 H 1.09001 * 109.46892 * 60.00192 * 29 2 1 54 54 H 1.09003 * 109.47110 * 300.00040 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2496 6 6 4.0804 -1.4416 0.0003 7 1 3.7174 -2.4694 0.0002 8 6 5.5874 -1.4416 0.0010 9 8 6.1941 -0.6710 -0.7124 10 7 6.2610 -2.2980 0.7944 11 6 5.5466 -3.1407 1.7629 12 6 6.1642 -2.9309 3.1490 13 6 7.6701 -3.1942 3.0772 14 6 8.3167 -2.2043 2.1055 15 6 7.7237 -2.4061 0.7074 16 1 7.9954 -3.3926 0.3316 17 6 8.2622 -1.3307 -0.2382 18 7 9.7180 -1.4571 -0.3429 19 6 10.5873 -0.6322 0.4998 20 6 10.2662 -2.3461 -1.2284 21 1 9.7607 -2.5641 -2.1575 22 6 11.4717 -2.9671 -0.9319 23 7 12.0260 -2.7981 0.2499 24 14 12.3075 -4.0429 -2.2101 25 1 11.5510 -3.9740 -3.4861 26 1 13.6951 -3.5624 -2.4307 27 1 12.3406 -5.4477 -1.7296 28 6 3.5704 -0.7204 -1.2489 29 6 2.0400 -0.7212 -1.2492 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.6766 -0.2073 2.1393 34 1 1.6766 -1.7488 1.2493 35 1 3.9332 -1.2348 2.1394 36 1 3.9329 0.3071 1.2497 37 1 5.6409 -4.1879 1.4756 38 1 4.4938 -2.8593 1.7856 39 1 5.7077 -3.6207 3.8588 40 1 5.9892 -1.9054 3.4743 41 1 8.1081 -3.0695 4.0676 42 1 7.8445 -4.2120 2.7284 43 1 8.1212 -1.1855 2.4402 44 1 9.3924 -2.3769 2.0725 45 1 7.8147 -1.4567 -1.2241 46 1 8.0102 -0.3446 0.1518 47 1 10.8615 -1.1904 1.3951 48 1 11.4881 -0.3697 -0.0548 49 1 10.0591 0.2772 0.7864 50 1 12.8681 -3.2323 0.4572 51 1 3.9334 0.3074 -1.2488 52 1 3.9337 -1.2343 -2.1388 53 1 1.6766 -0.2074 -2.1392 54 1 1.6766 -1.7489 -1.2492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158768196.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:17 Heat of formation + Delta-G solvation = -46.764972 kcal Electronic energy + Delta-G solvation = -29838.878169 eV Core-core repulsion = 26195.714794 eV Total energy + Delta-G solvation = -3643.163375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.81094 -39.48787 -38.17124 -37.27057 -34.39827 -33.69739 -33.13796 -31.82678 -31.47138 -28.56002 -27.87243 -27.32101 -25.60335 -24.10615 -23.58110 -22.98857 -22.11184 -21.53031 -20.64474 -19.67923 -18.81025 -17.74739 -17.14542 -16.65780 -16.31619 -16.06186 -15.55913 -15.42841 -15.31132 -15.15514 -15.08502 -14.71038 -14.61935 -14.39711 -14.05577 -13.97668 -13.76678 -13.36225 -13.24747 -13.06354 -13.02594 -12.82048 -12.66391 -12.57857 -12.44133 -12.24920 -12.17840 -12.02322 -11.95303 -11.85262 -11.81233 -11.68219 -11.51097 -11.48516 -11.34918 -11.16745 -10.87210 -10.68114 -10.03518 -9.41771 -8.63461 -7.81622 -5.40626 1.42071 1.43297 1.54414 1.73189 2.07870 2.49731 3.28481 3.52163 3.71984 3.79544 3.81572 3.93804 3.97622 4.03209 4.14154 4.20001 4.21482 4.28310 4.41330 4.44326 4.51708 4.56965 4.61515 4.64597 4.66180 4.70744 4.80955 4.84836 4.88096 4.97199 5.01686 5.04510 5.05113 5.10486 5.13831 5.18386 5.22135 5.22691 5.25089 5.31114 5.31755 5.34816 5.37068 5.47685 5.48359 5.50588 5.62014 5.65795 5.70266 5.81600 6.36933 6.62651 7.16273 7.33439 7.87131 8.36779 9.18591 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.018542 B = 0.003440 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.700387 B = 8138.627713 C = 8904.771609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.058 0.942 4 C -0.104 4.104 5 C -0.108 4.108 6 C -0.094 4.094 7 H 0.112 0.888 8 C 0.501 3.499 9 O -0.576 6.576 10 N -0.605 5.605 11 C 0.096 3.904 12 C -0.123 4.123 13 C -0.115 4.115 14 C -0.110 4.110 15 C 0.138 3.862 16 H 0.041 0.959 17 C 0.182 3.818 18 N -0.615 5.615 19 C 0.176 3.824 20 C -0.269 4.269 21 H 0.051 0.949 22 C -0.037 4.037 23 N -0.926 5.926 24 Si 0.965 3.035 25 H -0.274 1.274 26 H -0.288 1.288 27 H -0.284 1.284 28 C -0.099 4.099 29 C -0.106 4.106 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.046 0.954 44 H 0.051 0.949 45 H 0.037 0.963 46 H 0.039 0.961 47 H 0.021 0.979 48 H 0.008 0.992 49 H 0.014 0.986 50 H 0.250 0.750 51 H 0.049 0.951 52 H 0.048 0.952 53 H 0.065 0.935 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.271 0.127 7.361 26.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 H 0.076 0.924 4 C -0.142 4.142 5 C -0.146 4.146 6 C -0.115 4.115 7 H 0.130 0.870 8 C 0.291 3.709 9 O -0.455 6.455 10 N -0.338 5.338 11 C -0.026 4.026 12 C -0.161 4.161 13 C -0.153 4.153 14 C -0.149 4.149 15 C 0.032 3.968 16 H 0.059 0.941 17 C 0.057 3.943 18 N -0.340 5.340 19 C 0.031 3.969 20 C -0.399 4.399 21 H 0.068 0.932 22 C -0.233 4.233 23 N -0.572 5.572 24 Si 0.792 3.208 25 H -0.198 1.198 26 H -0.215 1.215 27 H -0.211 1.211 28 C -0.137 4.137 29 C -0.143 4.143 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.136 0.864 39 H 0.124 0.876 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.039 0.961 48 H 0.027 0.973 49 H 0.033 0.967 50 H 0.059 0.941 51 H 0.068 0.932 52 H 0.067 0.933 53 H 0.084 0.916 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -24.812 0.491 7.047 25.798 hybrid contribution 1.598 -0.422 -0.891 1.878 sum -23.214 0.069 6.156 24.017 Atomic orbital electron populations 1.21787 0.94029 1.02339 1.01874 1.21172 0.96260 0.99182 0.94816 0.92390 1.21571 0.92757 1.01960 0.97869 1.21600 0.97467 1.00016 0.95479 1.21374 0.88494 1.03005 0.98599 0.86978 1.21506 0.91443 0.79285 0.78639 1.90744 1.70109 1.40965 1.43686 1.48462 1.06600 1.40443 1.38344 1.22164 0.97605 0.94864 0.87935 1.21887 0.94417 1.03138 0.96681 1.21499 0.96660 0.98326 0.98798 1.21709 0.99910 0.98966 0.94283 1.21809 0.78627 0.99510 0.96848 0.94067 1.21265 0.81695 0.94842 0.96511 1.44329 1.01128 1.43801 1.44747 1.20600 0.91713 0.90445 0.94137 1.19311 1.05417 1.17802 0.97398 0.93174 1.25909 1.00039 0.99407 0.97992 1.70144 1.19114 1.46701 1.21205 0.85259 0.77910 0.78609 0.78979 1.19841 1.21474 1.21052 1.21325 0.96703 1.00001 0.95674 1.21581 0.92845 1.01630 0.98254 0.91903 0.92174 0.92860 0.90456 0.90060 0.89855 0.93193 0.90985 0.86409 0.87567 0.91492 0.91147 0.92689 0.93484 0.93048 0.94462 0.94306 0.96120 0.97291 0.96707 0.94081 0.93245 0.93336 0.91630 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.19 71.98 0.66 -0.80 16 2 C -0.10 -1.28 2.72 -10.80 -0.03 -1.31 16 3 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.10 -1.21 5.20 30.60 0.16 -1.05 16 5 C -0.11 -1.82 4.84 30.60 0.15 -1.67 16 6 C -0.09 -2.02 1.66 -11.54 -0.02 -2.04 16 7 H 0.11 1.90 7.29 -2.39 -0.02 1.88 16 8 C 0.50 16.35 6.81 87.66 0.60 16.95 16 9 O -0.58 -24.48 11.42 -3.05 -0.03 -24.51 16 10 N -0.61 -19.12 2.97 -795.01 -2.36 -21.49 16 11 C 0.10 1.99 5.72 86.36 0.49 2.48 16 12 C -0.12 -2.43 6.08 30.67 0.19 -2.24 16 13 C -0.12 -3.24 5.88 30.62 0.18 -3.06 16 14 C -0.11 -4.24 4.75 30.67 0.15 -4.10 16 15 C 0.14 5.72 3.16 44.97 0.14 5.86 16 16 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 17 C 0.18 9.04 3.60 86.38 0.31 9.35 16 18 N -0.62 -34.36 2.57 -726.95 -1.87 -36.23 16 19 C 0.18 9.50 8.22 127.77 1.05 10.55 16 20 C -0.27 -16.03 9.57 84.03 0.80 -15.22 16 21 H 0.05 3.04 7.84 -2.91 -0.02 3.02 16 22 C -0.04 -2.16 5.24 84.86 0.44 -1.72 16 23 N -0.93 -55.66 10.93 21.65 0.24 -55.43 16 24 Si 0.96 46.85 29.56 68.60 2.03 48.87 16 25 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 27 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 28 C -0.10 -2.26 4.64 30.61 0.14 -2.12 16 29 C -0.11 -1.65 5.21 30.61 0.16 -1.49 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 1.20 6.10 -2.39 -0.01 1.18 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.12 1.65 4.35 -2.38 -0.01 1.64 16 39 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.05 2.44 6.31 -2.39 -0.02 2.43 16 45 H 0.04 2.02 6.34 -2.38 -0.02 2.00 16 46 H 0.04 1.96 6.73 -2.39 -0.02 1.94 16 47 H 0.02 1.17 6.00 -2.39 -0.01 1.15 16 48 H 0.01 0.48 7.73 -2.39 -0.02 0.46 16 49 H 0.01 0.71 7.79 -2.39 -0.02 0.69 16 50 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 51 H 0.05 1.35 7.92 -2.39 -0.02 1.33 16 52 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 53 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 54 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -72.21 392.38 4.41 -67.80 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.84 Total: 12.61 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 5.58 Total: 8.37 kcal Atomic # 7 Polarization: -109.15 SS G_CDS: -3.99 Total: -113.14 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.03 Total: -24.51 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.87 kcal Total: -72.21 4.41 -67.80 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158768196.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.032 kcal (2) G-P(sol) polarization free energy of solvation -72.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds