Wall clock time and date at job start Tue Mar 31 2020 15:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.46813 * 2 1 4 4 C 1.53002 * 109.47517 * 239.99799 * 2 1 3 5 5 C 1.53000 * 109.47255 * 179.97438 * 4 2 1 6 6 C 1.50700 * 109.46852 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00185 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99593 * 179.97438 * 6 5 4 9 9 C 1.46502 * 120.00083 * 180.02562 * 8 6 5 10 10 C 1.52993 * 109.47604 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47488 * 183.60186 * 10 9 8 12 12 C 1.53002 * 115.54867 * 65.31644 * 11 10 9 13 13 N 1.46501 * 109.47314 * 65.32652 * 12 11 10 14 14 C 1.36937 * 120.00002 * 175.15853 * 13 12 11 15 15 H 1.08001 * 119.99954 * 0.02562 * 14 13 12 16 16 C 1.38807 * 119.99875 * 180.02562 * 14 13 12 17 17 N 1.31625 * 120.00136 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00181 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47389 * 59.99589 * 18 16 14 20 20 H 1.48503 * 109.47444 * 179.97438 * 18 16 14 21 21 H 1.48509 * 109.46878 * 299.99588 * 18 16 14 22 22 C 1.52996 * 117.50130 * 279.64766 * 11 10 9 23 23 C 1.52997 * 117.50081 * 210.98329 * 11 10 9 24 24 C 1.52999 * 109.47152 * 59.99906 * 5 4 2 25 25 C 1.53002 * 109.47117 * 300.00179 * 24 5 4 26 26 H 1.09000 * 109.46743 * 180.02562 * 25 24 5 27 27 C 1.52999 * 109.46951 * 299.99445 * 25 24 5 28 28 C 1.52999 * 109.47040 * 119.99614 * 2 1 3 29 29 H 1.09007 * 109.46829 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47827 * 299.99804 * 1 2 3 31 31 H 1.08997 * 109.47090 * 60.00574 * 1 2 3 32 32 H 1.09000 * 109.46743 * 59.99640 * 4 2 1 33 33 H 1.09003 * 109.46520 * 300.00056 * 4 2 1 34 34 H 1.09000 * 109.46962 * 300.00132 * 5 4 2 35 35 H 0.97004 * 120.00381 * 0.02562 * 8 6 5 36 36 H 1.09000 * 109.46598 * 60.00111 * 9 8 6 37 37 H 1.09000 * 109.47301 * 300.00461 * 9 8 6 38 38 H 1.09002 * 109.47265 * 63.59980 * 10 9 8 39 39 H 1.09000 * 109.47018 * 303.60162 * 10 9 8 40 40 H 1.09002 * 109.47296 * 185.32738 * 12 11 10 41 41 H 1.09005 * 109.47434 * 305.32632 * 12 11 10 42 42 H 0.96998 * 119.99798 * 355.16054 * 13 12 11 43 43 H 0.97006 * 120.00119 * 180.02562 * 17 16 14 44 44 H 1.09004 * 117.49492 * 0.02562 * 22 11 10 45 45 H 1.08998 * 117.50308 * 145.01266 * 22 11 10 46 46 H 1.08997 * 117.50209 * 214.97694 * 23 11 10 47 47 H 1.09001 * 117.49748 * 0.02562 * 23 11 10 48 48 H 1.09000 * 109.47002 * 60.00251 * 24 5 4 49 49 H 1.09003 * 109.47129 * 179.97438 * 24 5 4 50 50 H 1.08999 * 109.46919 * 179.97438 * 27 25 24 51 51 H 1.08997 * 109.47662 * 300.00245 * 27 25 24 52 52 H 1.09000 * 109.46764 * 60.00789 * 27 25 24 53 53 H 1.08995 * 109.47412 * 300.00065 * 28 2 1 54 54 H 1.09000 * 109.47002 * 60.00502 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 6 4.0724 -1.4317 -2.4796 7 8 3.2843 -1.8930 -3.2777 8 7 5.3974 -1.5540 -2.6932 9 6 5.8859 -2.2447 -3.8893 10 6 7.4158 -2.2442 -3.8896 11 6 7.9259 -2.8856 -5.1816 12 6 7.6019 -2.1245 -6.4687 13 7 8.3021 -0.8377 -6.4646 14 6 8.2429 -0.0224 -7.5632 15 1 7.6797 -0.3279 -8.4326 16 6 8.9068 1.1966 -7.5594 17 7 9.5928 1.5691 -6.4997 18 14 8.8255 2.3091 -9.0578 19 1 7.4112 2.6717 -9.3290 20 1 9.6118 3.5426 -8.8019 21 1 9.3884 1.5977 -10.2336 22 6 7.9474 -4.4139 -5.2510 23 6 9.2585 -3.6347 -5.1202 24 6 4.0805 -1.4415 -0.0002 25 6 3.5704 -0.7202 1.2490 26 1 3.9345 -1.2335 2.1390 27 6 4.0800 0.7224 1.2487 28 6 2.0399 -0.7212 1.2493 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3635 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.6767 -0.2075 -2.1392 33 1 1.6767 -1.7490 -1.2491 34 1 3.9329 0.3071 -1.2497 35 1 6.0278 -1.1847 -2.0551 36 1 5.5219 -1.7313 -4.7793 37 1 5.5232 -3.2726 -3.8889 38 1 7.7795 -2.8126 -3.0336 39 1 7.7788 -1.2185 -3.8253 40 1 7.9249 -2.7111 -7.3288 41 1 6.5271 -1.9531 -6.5289 42 1 8.8077 -0.5632 -5.6836 43 1 10.0565 2.4212 -6.4969 44 1 7.5978 -4.9623 -4.3763 45 1 7.7311 -4.8771 -6.2136 46 1 9.9043 -3.5857 -5.9970 47 1 9.7717 -3.6709 -4.1593 48 1 3.7176 -2.4693 0.0001 49 1 5.1706 -1.4415 -0.0006 50 1 3.7162 1.2364 2.1384 51 1 5.1699 0.7229 1.2485 52 1 3.7162 1.2360 0.3587 53 1 1.6766 -0.2073 2.1392 54 1 1.6766 -1.7488 1.2493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168384013.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:42 Heat of formation + Delta-G solvation = -61.915517 kcal Electronic energy + Delta-G solvation = -27976.294955 eV Core-core repulsion = 24332.474603 eV Total energy + Delta-G solvation = -3643.820352 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.43575 -39.79947 -39.15918 -36.10057 -35.76406 -34.08589 -32.96123 -32.78212 -30.87745 -27.79778 -27.64397 -27.29629 -25.40769 -24.64661 -23.68060 -22.92156 -22.23282 -21.30155 -19.92547 -19.59824 -19.01062 -17.96702 -17.19137 -16.82864 -16.60211 -16.17608 -16.05450 -15.85854 -15.39702 -15.28328 -15.01172 -14.80162 -14.62754 -14.44463 -14.16752 -14.07446 -13.88693 -13.46214 -13.17056 -13.06105 -13.01350 -12.78002 -12.67852 -12.53394 -12.49261 -12.29284 -12.21292 -12.11855 -11.97082 -11.93270 -11.83447 -11.77085 -11.44307 -11.14796 -11.14402 -10.89888 -10.82145 -10.67312 -10.50825 -10.07260 -8.97740 -7.95605 -5.22983 1.44981 1.47719 1.53740 1.63852 2.20007 2.53532 2.90755 3.37033 3.58054 3.69521 3.72044 3.81017 3.84456 3.98936 4.09078 4.11516 4.16869 4.19029 4.26114 4.35658 4.42070 4.43416 4.47036 4.48273 4.59818 4.64941 4.78902 4.82770 4.83676 4.84476 4.92403 4.97057 4.98302 5.03163 5.05704 5.08483 5.17562 5.19022 5.21373 5.26196 5.26798 5.31159 5.33901 5.36068 5.42205 5.46246 5.47155 5.48264 5.51628 5.65573 6.26818 6.56202 7.26060 7.33977 8.10037 8.36379 9.27371 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.002722 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.386202 B =10282.484898 C =11398.108721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 H 0.077 0.923 4 C -0.090 4.090 5 C -0.100 4.100 6 C 0.509 3.491 7 O -0.590 6.590 8 N -0.717 5.717 9 C 0.132 3.868 10 C -0.073 4.073 11 C -0.141 4.141 12 C 0.187 3.813 13 N -0.734 5.734 14 C -0.248 4.248 15 H 0.068 0.932 16 C -0.071 4.071 17 N -0.964 5.964 18 Si 0.970 3.030 19 H -0.282 1.282 20 H -0.291 1.291 21 H -0.279 1.279 22 C -0.150 4.150 23 C -0.163 4.163 24 C -0.100 4.100 25 C -0.085 4.085 26 H 0.086 0.914 27 C -0.155 4.155 28 C -0.108 4.108 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.109 0.891 35 H 0.413 0.587 36 H 0.035 0.965 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.058 0.942 40 H 0.016 0.984 41 H 0.010 0.990 42 H 0.377 0.623 43 H 0.252 0.748 44 H 0.117 0.883 45 H 0.094 0.906 46 H 0.078 0.922 47 H 0.109 0.891 48 H 0.062 0.938 49 H 0.080 0.920 50 H 0.062 0.938 51 H 0.059 0.941 52 H 0.054 0.946 53 H 0.075 0.925 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.791 -7.927 21.015 25.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.095 0.905 4 C -0.128 4.128 5 C -0.121 4.121 6 C 0.297 3.703 7 O -0.470 6.470 8 N -0.369 5.369 9 C 0.008 3.992 10 C -0.111 4.111 11 C -0.142 4.142 12 C 0.060 3.940 13 N -0.377 5.377 14 C -0.380 4.380 15 H 0.086 0.914 16 C -0.263 4.263 17 N -0.615 5.615 18 Si 0.799 3.201 19 H -0.208 1.208 20 H -0.217 1.217 21 H -0.205 1.205 22 C -0.187 4.187 23 C -0.200 4.200 24 C -0.138 4.138 25 C -0.103 4.103 26 H 0.105 0.895 27 C -0.212 4.212 28 C -0.145 4.145 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.127 0.873 35 H 0.249 0.751 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.034 0.966 41 H 0.028 0.972 42 H 0.209 0.791 43 H 0.061 0.939 44 H 0.135 0.865 45 H 0.112 0.888 46 H 0.096 0.904 47 H 0.128 0.872 48 H 0.081 0.919 49 H 0.098 0.902 50 H 0.081 0.919 51 H 0.078 0.922 52 H 0.073 0.927 53 H 0.094 0.906 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.390 -8.216 20.263 25.131 hybrid contribution 0.527 1.101 -1.008 1.583 sum -11.863 -7.115 19.254 23.708 Atomic orbital electron populations 1.21815 0.94807 1.01844 1.01943 1.21171 0.95825 0.99841 0.93981 0.90460 1.21355 0.92546 1.00898 0.98051 1.21403 0.97728 1.00988 0.91984 1.21361 0.82018 0.79045 0.87915 1.90667 1.56490 1.50772 1.49074 1.45989 1.07210 1.58315 1.25362 1.21127 0.94409 0.96676 0.86975 1.21075 0.92841 1.01247 0.95932 1.21406 1.03187 0.94242 0.95356 1.20245 0.93970 0.85902 0.93834 1.42397 1.60605 1.17851 1.16822 1.19557 1.25092 0.98580 0.94795 0.91402 1.25481 1.00758 0.99598 1.00479 1.69793 1.38443 1.22949 1.30309 0.85276 0.77365 0.78175 0.79329 1.20821 1.21738 1.20484 1.23093 1.00232 0.91433 1.03972 1.22971 0.90417 1.03306 1.03266 1.21571 1.01200 0.98869 0.92187 1.21087 0.95403 0.96615 0.97235 0.89550 1.21981 1.01291 0.95793 1.02143 1.21647 0.94948 1.00609 0.97306 0.92905 0.91392 0.93300 0.93481 0.92641 0.87340 0.75057 0.94636 0.91437 0.88631 0.92342 0.96571 0.97221 0.79067 0.93949 0.86493 0.88777 0.90367 0.87225 0.91932 0.90156 0.91904 0.92231 0.92699 0.90632 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.19 71.98 0.66 -1.40 16 2 C -0.09 -1.34 2.45 -10.80 -0.03 -1.37 16 3 H 0.08 1.12 6.43 -2.39 -0.02 1.10 16 4 C -0.09 -1.89 3.77 30.60 0.12 -1.77 16 5 C -0.10 -1.99 2.25 -11.54 -0.03 -2.01 16 6 C 0.51 14.30 7.15 87.66 0.63 14.92 16 7 O -0.59 -22.06 15.98 -3.02 -0.05 -22.10 16 8 N -0.72 -18.14 5.45 -463.07 -2.52 -20.66 16 9 C 0.13 3.92 5.57 86.38 0.48 4.40 16 10 C -0.07 -2.04 5.12 30.59 0.16 -1.89 16 11 C -0.14 -4.43 1.56 -52.18 -0.08 -4.51 16 12 C 0.19 7.84 5.93 86.38 0.51 8.35 16 13 N -0.73 -37.96 5.52 -343.44 -1.89 -39.86 16 14 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 15 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 16 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 17 N -0.96 -58.97 13.06 21.65 0.28 -58.68 16 18 Si 0.97 47.03 29.55 68.60 2.03 49.06 16 19 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 20 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 22 C -0.15 -3.67 9.94 30.62 0.30 -3.36 16 23 C -0.16 -4.54 9.94 30.62 0.30 -4.24 16 24 C -0.10 -1.45 4.63 30.59 0.14 -1.30 16 25 C -0.09 -0.96 3.20 -10.78 -0.03 -1.00 16 26 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 27 C -0.16 -1.73 8.50 71.98 0.61 -1.12 16 28 C -0.11 -1.29 4.74 30.61 0.14 -1.14 16 29 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 33 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 34 H 0.11 1.98 6.43 -2.39 -0.02 1.96 16 35 H 0.41 7.97 7.89 -92.71 -0.73 7.24 16 36 H 0.04 1.34 6.83 -2.39 -0.02 1.32 16 37 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.10 2.02 8.09 -2.39 -0.02 2.00 16 39 H 0.06 1.92 7.51 -2.39 -0.02 1.91 16 40 H 0.02 0.70 8.09 -2.39 -0.02 0.68 16 41 H 0.01 0.44 6.89 -2.38 -0.02 0.42 16 42 H 0.38 20.34 7.04 -92.71 -0.65 19.69 16 43 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 44 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.08 2.47 8.14 -2.39 -0.02 2.46 16 47 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 48 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.08 0.96 7.56 -2.39 -0.02 0.94 16 50 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.05 0.70 4.81 -2.39 -0.01 0.69 16 53 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 54 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -71.24 414.21 2.53 -68.71 By element: Atomic # 1 Polarization: 38.59 SS G_CDS: -0.52 Total: 38.08 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 5.20 Total: -14.54 kcal Atomic # 7 Polarization: -115.07 SS G_CDS: -4.13 Total: -119.20 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.05 Total: -22.10 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -71.24 2.53 -68.71 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168384013.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.797 kcal (2) G-P(sol) polarization free energy of solvation -71.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds