Wall clock time and date at job start Tue Mar 31 2020 15:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47287 * 2 1 4 4 C 1.53001 * 109.47309 * 239.99866 * 2 1 3 5 5 C 1.53004 * 109.47010 * 180.02562 * 4 2 1 6 6 C 1.52994 * 109.47302 * 59.99764 * 5 4 2 7 7 C 1.53001 * 109.47280 * 300.00070 * 6 5 4 8 8 C 1.53000 * 109.46864 * 60.00266 * 7 6 5 9 9 H 1.09001 * 109.47694 * 59.99889 * 8 7 6 10 10 C 1.53001 * 109.46864 * 179.97438 * 8 7 6 11 11 C 1.50700 * 109.47500 * 294.99653 * 10 8 7 12 12 O 1.21287 * 119.99573 * 0.02562 * 11 10 8 13 13 N 1.34776 * 120.00458 * 180.02562 * 11 10 8 14 14 C 1.46504 * 119.99754 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46795 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47165 * 175.02470 * 15 14 13 17 17 C 1.53006 * 115.54733 * 278.03081 * 16 15 14 18 18 N 1.46498 * 109.47336 * 303.90396 * 17 16 15 19 19 C 1.36929 * 119.99910 * 175.59616 * 18 17 16 20 20 H 1.08004 * 120.00421 * 359.97438 * 19 18 17 21 21 C 1.38816 * 120.00050 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99920 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00051 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47028 * 89.99781 * 23 21 19 25 25 H 1.48502 * 109.47031 * 209.99437 * 23 21 19 26 26 H 1.48493 * 109.47330 * 329.99706 * 23 21 19 27 27 C 1.52995 * 117.49965 * 132.32860 * 16 15 14 28 28 C 1.52991 * 117.50080 * 63.69997 * 16 15 14 29 29 H 1.09001 * 109.47287 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47627 * 299.99876 * 1 2 3 31 31 H 1.09004 * 109.47228 * 60.00001 * 1 2 3 32 32 H 1.08998 * 109.47223 * 60.00161 * 4 2 1 33 33 H 1.09002 * 109.47276 * 299.99777 * 4 2 1 34 34 H 1.09001 * 109.47144 * 180.02562 * 5 4 2 35 35 H 1.09002 * 109.46682 * 299.99851 * 5 4 2 36 36 H 1.09002 * 109.47181 * 60.00392 * 6 5 4 37 37 H 1.08999 * 109.47038 * 179.97438 * 6 5 4 38 38 H 1.08991 * 109.47202 * 299.99781 * 7 6 5 39 39 H 1.09004 * 109.46867 * 180.02562 * 7 6 5 40 40 H 1.09005 * 109.46964 * 54.99646 * 10 8 7 41 41 H 1.08997 * 109.47301 * 174.99584 * 10 8 7 42 42 H 0.96996 * 119.99564 * 359.97438 * 13 11 10 43 43 H 1.08995 * 109.47183 * 299.99649 * 14 13 11 44 44 H 1.09001 * 109.46977 * 60.00028 * 14 13 11 45 45 H 1.09001 * 109.46955 * 295.02589 * 15 14 13 46 46 H 1.09004 * 109.46812 * 55.01927 * 15 14 13 47 47 H 1.08998 * 109.46646 * 63.90239 * 17 16 15 48 48 H 1.09002 * 109.46979 * 183.89611 * 17 16 15 49 49 H 0.97003 * 119.99632 * 355.58312 * 18 17 16 50 50 H 0.97002 * 120.00063 * 180.02562 * 22 21 19 51 51 H 1.08998 * 117.50096 * 359.97438 * 27 16 15 52 52 H 1.09001 * 117.50048 * 145.02308 * 27 16 15 53 53 H 1.08993 * 117.50174 * 214.98135 * 28 16 15 54 54 H 1.08999 * 117.50252 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4433 0.0004 7 6 3.5695 -0.7220 1.2496 8 6 2.0395 -0.7216 1.2493 9 1 1.6758 -1.7492 1.2491 10 6 1.5294 -0.0009 2.4988 11 6 1.9275 -0.7800 3.7259 12 8 2.5576 -1.8100 3.6121 13 7 1.5834 -0.3321 4.9496 14 6 1.9710 -1.0893 6.1424 15 6 1.4608 -0.3687 7.3919 16 6 1.7565 -1.2201 8.6282 17 6 0.7546 -2.3411 8.9123 18 7 -0.5922 -1.7756 9.0243 19 6 -1.6708 -2.6032 9.1881 20 1 -1.5287 -3.6728 9.2344 21 6 -2.9470 -2.0674 9.2937 22 7 -3.1203 -0.7639 9.2369 23 14 -4.4185 -3.1964 9.5165 24 1 -4.6596 -3.4152 10.9654 25 1 -5.6186 -2.5722 8.9037 26 1 -4.1471 -4.4992 8.8576 27 6 2.3960 -0.5223 9.8302 28 6 3.2243 -1.4807 8.9720 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.6767 -0.2075 -2.1392 33 1 1.6767 -1.7490 -1.2492 34 1 3.9334 -1.2352 -2.1390 35 1 3.9337 0.3058 -1.2486 36 1 3.7159 -2.4709 0.0002 37 1 5.1695 -1.4440 0.0004 38 1 3.9331 0.3054 1.2499 39 1 3.9328 -1.2358 2.1396 40 1 1.9644 0.9975 2.5454 41 1 0.4432 0.0777 2.4550 42 1 1.0798 0.4918 5.0405 43 1 1.5368 -2.0880 6.0958 44 1 3.0573 -1.1671 6.1863 45 1 1.9621 0.5947 7.4858 46 1 0.3854 -0.2119 7.3073 47 1 0.7782 -3.0646 8.0974 48 1 1.0194 -2.8370 9.8462 49 1 -0.7198 -0.8149 8.9826 50 1 -4.0120 -0.3895 9.3110 51 1 2.6066 0.5434 9.7401 52 1 2.1031 -0.8617 10.8237 53 1 3.4763 -2.4505 9.4009 54 1 3.9795 -1.0459 8.3172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168463023.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:32 Heat of formation + Delta-G solvation = -62.520712 kcal Electronic energy + Delta-G solvation = -27683.505775 eV Core-core repulsion = 24039.659180 eV Total energy + Delta-G solvation = -3643.846595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.15690 -39.79197 -39.16569 -36.07099 -35.70696 -34.04118 -32.91512 -32.80193 -31.21258 -28.59958 -27.78070 -26.75940 -24.66072 -24.55547 -23.22201 -22.75629 -21.95662 -21.26121 -20.57077 -19.89828 -19.03838 -17.87470 -17.04335 -16.89872 -16.62735 -16.16621 -15.95641 -15.72184 -15.38349 -15.29359 -15.03157 -14.95458 -14.82210 -14.57834 -14.16392 -13.93197 -13.76033 -13.31690 -13.15606 -13.04403 -12.93482 -12.80343 -12.67708 -12.61980 -12.40000 -12.31649 -12.26561 -12.10990 -11.94156 -11.85603 -11.82601 -11.69266 -11.28321 -11.16807 -11.09477 -10.92415 -10.80669 -10.61384 -10.44674 -10.00935 -8.98030 -7.95585 -5.22975 1.45818 1.46831 1.55335 1.71198 2.26627 2.53784 2.89875 3.37464 3.69367 3.72034 3.81013 3.83898 3.85787 3.97716 4.05109 4.09801 4.18121 4.26208 4.30311 4.40846 4.42863 4.49113 4.50604 4.58922 4.62709 4.66385 4.72438 4.75935 4.83129 4.86418 4.89930 4.93847 4.97836 5.01831 5.06950 5.09440 5.18995 5.23248 5.24392 5.27213 5.31783 5.33029 5.34335 5.37958 5.41189 5.47568 5.48416 5.52521 5.61210 5.68393 6.27069 6.61834 7.32759 7.34252 8.09818 8.36338 9.27602 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012342 B = 0.002588 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.106384 B =10816.066468 C =12430.063746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.081 4.081 3 H 0.083 0.917 4 C -0.114 4.114 5 C -0.116 4.116 6 C -0.118 4.118 7 C -0.117 4.117 8 C -0.062 4.062 9 H 0.049 0.951 10 C -0.135 4.135 11 C 0.504 3.496 12 O -0.581 6.581 13 N -0.724 5.724 14 C 0.136 3.864 15 C -0.077 4.077 16 C -0.140 4.140 17 C 0.188 3.812 18 N -0.735 5.735 19 C -0.247 4.247 20 H 0.068 0.932 21 C -0.070 4.070 22 N -0.964 5.964 23 Si 0.969 3.031 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.274 1.274 27 C -0.163 4.163 28 C -0.152 4.152 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.119 0.881 41 H 0.109 0.891 42 H 0.412 0.588 43 H 0.035 0.965 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.059 0.941 47 H 0.014 0.986 48 H 0.014 0.986 49 H 0.378 0.622 50 H 0.252 0.748 51 H 0.109 0.891 52 H 0.083 0.917 53 H 0.095 0.905 54 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.969 7.119 -18.621 24.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.099 4.099 3 H 0.102 0.898 4 C -0.151 4.151 5 C -0.153 4.153 6 C -0.156 4.156 7 C -0.154 4.154 8 C -0.081 4.081 9 H 0.068 0.932 10 C -0.174 4.174 11 C 0.293 3.707 12 O -0.461 6.461 13 N -0.376 5.376 14 C 0.012 3.988 15 C -0.115 4.115 16 C -0.141 4.141 17 C 0.061 3.939 18 N -0.378 5.378 19 C -0.378 4.378 20 H 0.086 0.914 21 C -0.263 4.263 22 N -0.615 5.615 23 Si 0.798 3.202 24 H -0.214 1.214 25 H -0.219 1.219 26 H -0.200 1.200 27 C -0.200 4.200 28 C -0.190 4.190 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.137 0.863 41 H 0.127 0.873 42 H 0.249 0.751 43 H 0.054 0.946 44 H 0.087 0.913 45 H 0.107 0.893 46 H 0.077 0.923 47 H 0.031 0.969 48 H 0.031 0.969 49 H 0.210 0.790 50 H 0.061 0.939 51 H 0.127 0.873 52 H 0.101 0.899 53 H 0.114 0.886 54 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 15.333 6.208 -18.677 24.949 hybrid contribution -1.438 -0.340 0.640 1.610 sum 13.895 5.868 -18.038 23.513 Atomic orbital electron populations 1.21943 0.95043 1.01591 1.02496 1.21133 0.95527 0.99812 0.93439 0.89824 1.21591 0.95578 1.00305 0.97658 1.21527 0.95600 1.00974 0.97194 1.21497 1.00160 0.98916 0.94988 1.21641 0.94945 1.00679 0.98163 1.20882 0.95676 0.98607 0.92940 0.93246 1.21895 1.04127 1.00665 0.90722 1.21371 0.78322 0.85472 0.85547 1.90649 1.41832 1.26432 1.87192 1.46069 1.57670 1.28156 1.05666 1.21089 0.99420 0.94557 0.83740 1.21102 1.01477 0.97921 0.90996 1.21411 0.94911 1.00481 0.97336 1.20220 0.83877 0.93342 0.96426 1.42431 1.01426 1.06081 1.87827 1.19581 0.87111 0.90591 1.40557 0.91375 1.25476 0.99944 0.97224 1.03668 1.69794 1.21736 1.10962 1.58988 0.85206 0.79259 0.78157 0.77542 1.21369 1.21872 1.19951 1.23057 1.03127 0.98990 0.94796 1.23037 0.91995 1.01080 1.02842 0.93743 0.91864 0.91620 0.90757 0.93108 0.91601 0.91196 0.93594 0.91943 0.91454 0.92855 0.86336 0.87324 0.75144 0.94604 0.91302 0.89256 0.92267 0.96858 0.96858 0.78961 0.93939 0.87295 0.89889 0.88608 0.86904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.85 71.98 0.64 -1.49 16 2 C -0.08 -1.15 2.25 -10.79 -0.02 -1.17 16 3 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.11 -1.58 5.20 30.60 0.16 -1.42 16 5 C -0.12 -1.58 5.92 30.59 0.18 -1.40 16 6 C -0.12 -2.10 5.92 30.59 0.18 -1.92 16 7 C -0.12 -2.33 4.94 30.59 0.15 -2.17 16 8 C -0.06 -1.19 1.36 -10.79 -0.01 -1.20 16 9 H 0.05 1.23 7.95 -2.39 -0.02 1.21 16 10 C -0.13 -2.41 4.96 29.85 0.15 -2.26 16 11 C 0.50 13.27 7.55 87.66 0.66 13.93 16 12 O -0.58 -20.04 13.97 -3.05 -0.04 -20.08 16 13 N -0.72 -17.87 5.56 -463.05 -2.57 -20.45 16 14 C 0.14 3.92 5.49 86.38 0.47 4.39 16 15 C -0.08 -2.22 5.20 30.59 0.16 -2.06 16 16 C -0.14 -4.42 1.65 -52.18 -0.09 -4.50 16 17 C 0.19 7.81 6.15 86.38 0.53 8.34 16 18 N -0.73 -37.60 5.23 -343.44 -1.80 -39.39 16 19 C -0.25 -14.03 9.99 84.04 0.84 -13.19 16 20 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 21 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 22 N -0.96 -58.39 13.06 21.65 0.28 -58.10 16 23 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 26 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 27 C -0.16 -4.43 9.87 30.59 0.30 -4.13 16 28 C -0.15 -3.75 9.57 30.59 0.29 -3.45 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.82 6.32 -2.39 -0.02 0.80 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.05 1.40 5.95 -2.39 -0.01 1.38 16 40 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.11 1.71 6.17 -2.39 -0.01 1.70 16 42 H 0.41 8.02 8.47 -92.71 -0.79 7.23 16 43 H 0.04 1.28 7.96 -2.39 -0.02 1.26 16 44 H 0.07 1.89 7.72 -2.39 -0.02 1.87 16 45 H 0.09 2.06 7.93 -2.39 -0.02 2.05 16 46 H 0.06 2.08 6.94 -2.39 -0.02 2.07 16 47 H 0.01 0.59 7.96 -2.39 -0.02 0.57 16 48 H 0.01 0.57 8.10 -2.39 -0.02 0.55 16 49 H 0.38 20.14 6.80 -92.71 -0.63 19.51 16 50 H 0.25 14.75 8.31 -92.71 -0.77 13.97 16 51 H 0.11 2.53 8.07 -2.39 -0.02 2.51 16 52 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 53 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 54 H 0.11 2.30 7.90 -2.39 -0.02 2.29 16 Total: -1.00 -69.59 415.30 2.41 -67.19 By element: Atomic # 1 Polarization: 40.08 SS G_CDS: -0.55 Total: 39.52 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 5.06 Total: -17.32 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -4.08 Total: -117.94 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.04 Total: -20.08 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -69.59 2.41 -67.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168463023.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.665 kcal (2) G-P(sol) polarization free energy of solvation -69.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds