Wall clock time and date at job start Tue Mar 31 2020 15:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46759 * 2 1 4 4 C 1.53002 * 109.47225 * 120.00181 * 2 1 3 5 5 C 1.52993 * 109.47072 * 60.00260 * 4 2 1 6 6 C 1.53001 * 109.47398 * 59.99864 * 5 4 2 7 7 C 1.53002 * 109.47120 * 300.00107 * 6 5 4 8 8 C 1.52998 * 109.47213 * 240.00515 * 2 1 3 9 9 H 1.08991 * 109.47387 * 179.97438 * 8 2 1 10 10 C 1.53005 * 109.46993 * 59.99500 * 8 2 1 11 11 C 1.50703 * 109.46973 * 175.00048 * 10 8 2 12 12 O 1.21281 * 119.99947 * 0.02562 * 11 10 8 13 13 N 1.34775 * 120.00041 * 179.97438 * 11 10 8 14 14 C 1.46503 * 119.99993 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.46791 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.46896 * 185.89512 * 15 14 13 17 17 C 1.53000 * 115.56225 * 320.02217 * 16 15 14 18 18 N 1.46494 * 109.47433 * 280.47701 * 17 16 15 19 19 C 1.36942 * 119.99993 * 185.10453 * 18 17 16 20 20 H 1.07998 * 120.00224 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99952 * 179.97438 * 19 18 17 22 22 N 1.31630 * 120.00014 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00086 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47213 * 60.00274 * 23 21 19 25 25 H 1.48503 * 109.47179 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47277 * 300.00106 * 23 21 19 27 27 C 1.53004 * 117.50083 * 174.33609 * 16 15 14 28 28 C 1.52997 * 60.00113 * 252.51047 * 27 16 15 29 29 H 1.09003 * 109.46759 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47283 * 299.99253 * 1 2 3 31 31 H 1.08991 * 109.47630 * 59.99806 * 1 2 3 32 32 H 1.09003 * 109.46546 * 180.02562 * 4 2 1 33 33 H 1.08998 * 109.46818 * 300.00103 * 4 2 1 34 34 H 1.09003 * 109.47190 * 179.97438 * 5 4 2 35 35 H 1.09006 * 109.47361 * 299.99968 * 5 4 2 36 36 H 1.09003 * 109.47196 * 59.99446 * 6 5 4 37 37 H 1.08994 * 109.47576 * 180.02562 * 6 5 4 38 38 H 1.09002 * 109.47262 * 299.99948 * 7 6 5 39 39 H 1.08994 * 109.47710 * 179.97438 * 7 6 5 40 40 H 1.08993 * 109.47050 * 55.00400 * 10 8 2 41 41 H 1.09004 * 109.47292 * 295.00164 * 10 8 2 42 42 H 0.97001 * 120.00119 * 0.02562 * 13 11 10 43 43 H 1.08993 * 109.47021 * 60.00440 * 14 13 11 44 44 H 1.08996 * 109.46928 * 300.00176 * 14 13 11 45 45 H 1.09002 * 109.47554 * 65.89708 * 15 14 13 46 46 H 1.08996 * 109.47506 * 305.89361 * 15 14 13 47 47 H 1.09010 * 109.46821 * 40.47446 * 17 16 15 48 48 H 1.08997 * 109.47179 * 160.46777 * 17 16 15 49 49 H 0.97006 * 120.00005 * 5.10134 * 18 17 16 50 50 H 0.96992 * 119.99701 * 179.97438 * 22 21 19 51 51 H 1.09000 * 117.49596 * 145.01749 * 27 16 15 52 52 H 1.09004 * 117.49469 * 0.02562 * 27 16 15 53 53 H 1.08999 * 117.50051 * 107.48633 * 28 27 16 54 54 H 1.09005 * 117.49766 * 252.51586 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5302 -2.1637 1.2491 6 6 2.0402 -2.8850 -0.0001 7 6 1.5301 -2.1637 -1.2494 8 6 2.0401 -0.7211 -1.2493 9 1 3.1300 -0.7207 -1.2495 10 6 1.5299 0.0002 -2.4985 11 6 2.1309 -0.6350 -3.7259 12 8 2.8918 -1.5726 -3.6127 13 7 1.8219 -0.1618 -4.9494 14 6 2.4056 -0.7797 -6.1427 15 6 1.8956 -0.0583 -7.3918 16 6 2.3867 -0.7927 -8.6410 17 6 3.8232 -1.3155 -8.5776 18 7 4.7551 -0.2157 -8.8384 19 6 6.0980 -0.4651 -8.9372 20 1 6.4701 -1.4724 -8.8224 21 6 6.9810 0.5769 -9.1848 22 7 6.5276 1.8048 -9.3242 23 14 8.8127 0.2368 -9.3203 24 1 9.0585 -0.7141 -10.4342 25 1 9.5340 1.5075 -9.5854 26 1 9.3020 -0.3535 -8.0485 27 6 1.8723 -0.3031 -9.9963 28 6 1.3653 -1.6258 -9.4180 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 3.1301 -0.7208 1.2493 33 1 1.6767 -0.2075 2.1392 34 1 1.8939 -2.6778 2.1389 35 1 0.4401 -2.1638 1.2491 36 1 3.1302 -2.8849 -0.0002 37 1 1.6765 -3.9125 -0.0004 38 1 0.4401 -2.1637 -1.2494 39 1 1.8937 -2.6771 -2.1394 40 1 1.8183 1.0504 -2.4548 41 1 0.4436 -0.0768 -2.5444 42 1 1.2130 0.5878 -5.0400 43 1 2.1172 -1.8299 -6.1860 44 1 3.4919 -0.7028 -6.0971 45 1 2.2723 0.9645 -7.4000 46 1 0.8058 -0.0440 -7.3836 47 1 4.0162 -1.7282 -7.5873 48 1 3.9601 -2.0937 -9.3284 49 1 4.4210 0.6892 -8.9411 50 1 7.1447 2.5329 -9.4968 51 1 2.5574 -0.3535 -10.8426 52 1 1.1844 0.5425 -9.9979 53 1 0.3435 -1.6507 -9.0392 54 1 1.7168 -2.5464 -9.8839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168463024.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:36 Heat of formation + Delta-G solvation = -58.588164 kcal Electronic energy + Delta-G solvation = -27801.170936 eV Core-core repulsion = 24157.494869 eV Total energy + Delta-G solvation = -3643.676067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.23346 -39.89584 -39.28275 -36.04448 -35.74042 -33.80055 -32.78777 -32.53902 -31.35041 -28.73818 -27.71778 -26.96644 -24.68144 -24.49138 -23.22363 -23.05364 -22.49552 -21.31033 -19.94480 -19.28420 -18.98513 -17.90934 -17.15597 -16.74160 -16.68652 -16.53541 -16.15470 -15.82600 -15.38449 -15.34181 -15.08892 -14.91505 -14.57654 -14.43417 -14.13696 -13.77707 -13.74791 -13.39805 -13.29671 -13.13653 -12.99493 -12.80803 -12.75766 -12.48095 -12.39845 -12.31033 -12.20683 -12.16968 -11.92240 -11.90603 -11.79508 -11.61388 -11.18632 -11.09830 -11.05221 -10.85466 -10.78311 -10.60442 -10.47268 -10.00877 -8.97972 -7.96414 -5.23661 1.43430 1.46666 1.52549 1.72917 2.26809 2.52563 2.90941 3.35890 3.68766 3.75816 3.78988 3.81845 3.87677 3.99926 4.04619 4.10317 4.22242 4.25290 4.33564 4.42926 4.49806 4.51037 4.52903 4.53411 4.60108 4.63964 4.72751 4.79255 4.84227 4.84877 4.93345 4.94796 5.00542 5.06874 5.09359 5.12918 5.17571 5.21922 5.23210 5.25922 5.30345 5.34902 5.36054 5.36281 5.44427 5.45823 5.48457 5.55693 5.63543 5.73761 6.26159 6.64771 7.33053 7.37056 8.09821 8.35630 9.26652 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012719 B = 0.002562 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.901735 B =10924.542854 C =12224.045298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.083 4.083 3 H 0.074 0.926 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.119 4.119 7 C -0.117 4.117 8 C -0.065 4.065 9 H 0.045 0.955 10 C -0.129 4.129 11 C 0.500 3.500 12 O -0.584 6.584 13 N -0.720 5.720 14 C 0.131 3.869 15 C -0.071 4.071 16 C -0.142 4.142 17 C 0.182 3.818 18 N -0.734 5.734 19 C -0.247 4.247 20 H 0.067 0.933 21 C -0.072 4.072 22 N -0.965 5.965 23 Si 0.970 3.030 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.283 1.283 27 C -0.165 4.165 28 C -0.147 4.147 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.042 0.958 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.111 0.889 41 H 0.123 0.877 42 H 0.415 0.585 43 H 0.059 0.941 44 H 0.032 0.968 45 H 0.061 0.939 46 H 0.102 0.898 47 H 0.016 0.984 48 H 0.014 0.986 49 H 0.376 0.624 50 H 0.252 0.748 51 H 0.072 0.928 52 H 0.110 0.890 53 H 0.122 0.878 54 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.820 -2.914 18.334 27.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.101 4.101 3 H 0.093 0.907 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.084 4.084 9 H 0.064 0.936 10 C -0.168 4.168 11 C 0.289 3.711 12 O -0.464 6.464 13 N -0.372 5.372 14 C 0.007 3.993 15 C -0.108 4.108 16 C -0.143 4.143 17 C 0.056 3.944 18 N -0.376 5.376 19 C -0.379 4.379 20 H 0.085 0.915 21 C -0.265 4.265 22 N -0.616 5.616 23 Si 0.799 3.201 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.209 1.209 27 C -0.203 4.203 28 C -0.184 4.184 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.129 0.871 41 H 0.141 0.859 42 H 0.252 0.748 43 H 0.077 0.923 44 H 0.051 0.949 45 H 0.080 0.920 46 H 0.120 0.880 47 H 0.034 0.966 48 H 0.032 0.968 49 H 0.208 0.792 50 H 0.060 0.940 51 H 0.090 0.910 52 H 0.128 0.872 53 H 0.140 0.860 54 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.129 -3.691 18.404 27.523 hybrid contribution 1.527 0.413 -0.600 1.692 sum -18.602 -3.278 17.803 25.956 Atomic orbital electron populations 1.21991 0.93963 1.02376 1.02457 1.21110 0.96992 0.98850 0.93184 0.90723 1.21566 1.00008 0.95853 0.97860 1.21555 1.01377 0.95475 0.96928 1.21501 0.99839 0.99067 0.95247 1.21663 1.00642 0.95314 0.97853 1.20866 0.99189 0.95035 0.93277 0.93615 1.21854 1.03276 1.01440 0.90267 1.21502 0.80726 0.83107 0.85790 1.90678 1.37861 1.30674 1.87236 1.45994 1.49124 1.36756 1.05375 1.21127 0.96837 0.96994 0.84310 1.21094 1.01414 0.98182 0.90122 1.21463 0.93918 1.05195 0.93710 1.20356 0.87316 0.90046 0.96697 1.42410 1.02571 1.06354 1.86290 1.19558 0.84976 0.93642 1.39735 0.91465 1.25494 1.02140 0.95320 1.03502 1.69798 1.34810 0.99396 1.57596 0.85272 0.80410 0.76481 0.77979 1.20370 1.21695 1.20903 1.22884 1.03010 0.98911 0.95447 1.23173 0.98671 0.94600 1.01945 0.92115 0.91977 0.91593 0.93278 0.90679 0.91891 0.90700 0.93927 0.92115 0.90886 0.93346 0.87075 0.85941 0.74788 0.92302 0.94920 0.92027 0.88013 0.96600 0.96845 0.79163 0.93968 0.90971 0.87174 0.85964 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.15 71.98 0.59 -0.94 16 2 C -0.08 -1.14 2.72 -10.79 -0.03 -1.17 16 3 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.12 -1.63 5.45 30.59 0.17 -1.46 16 5 C -0.12 -1.66 5.65 30.59 0.17 -1.48 16 6 C -0.12 -2.26 5.92 30.60 0.18 -2.08 16 7 C -0.12 -2.43 4.67 30.60 0.14 -2.29 16 8 C -0.06 -1.25 1.61 -10.79 -0.02 -1.27 16 9 H 0.05 1.18 7.95 -2.39 -0.02 1.16 16 10 C -0.13 -2.18 4.67 29.85 0.14 -2.04 16 11 C 0.50 13.33 7.55 87.66 0.66 13.99 16 12 O -0.58 -21.58 13.96 -3.03 -0.04 -21.62 16 13 N -0.72 -17.06 5.56 -463.07 -2.57 -19.63 16 14 C 0.13 3.99 4.62 86.38 0.40 4.39 16 15 C -0.07 -1.87 5.46 30.59 0.17 -1.70 16 16 C -0.14 -4.45 1.81 -52.18 -0.09 -4.55 16 17 C 0.18 7.73 5.82 86.38 0.50 8.23 16 18 N -0.73 -38.61 5.57 -343.45 -1.91 -40.52 16 19 C -0.25 -14.48 9.99 84.03 0.84 -13.64 16 20 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 21 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 22 N -0.97 -60.12 13.06 21.65 0.28 -59.84 16 23 Si 0.97 47.91 29.55 68.60 2.03 49.94 16 24 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 26 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 27 C -0.17 -4.80 9.94 30.59 0.30 -4.50 16 28 C -0.15 -3.58 9.82 30.59 0.30 -3.28 16 29 H 0.06 0.65 4.81 -2.39 -0.01 0.63 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.54 6.54 -2.39 -0.02 0.52 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.91 6.43 -2.38 -0.02 0.90 16 36 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.24 6.43 -2.39 -0.02 1.22 16 39 H 0.05 1.35 5.95 -2.39 -0.01 1.33 16 40 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.12 1.36 6.71 -2.38 -0.02 1.34 16 42 H 0.42 6.55 8.47 -92.71 -0.79 5.76 16 43 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.03 1.32 6.87 -2.39 -0.02 1.30 16 45 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.10 1.90 7.95 -2.39 -0.02 1.88 16 47 H 0.02 0.72 6.01 -2.38 -0.01 0.71 16 48 H 0.01 0.59 7.95 -2.39 -0.02 0.57 16 49 H 0.38 20.75 7.67 -92.70 -0.71 20.04 16 50 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 51 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 52 H 0.11 2.70 8.14 -2.38 -0.02 2.68 16 53 H 0.12 2.21 8.08 -2.39 -0.02 2.19 16 54 H 0.09 2.25 8.09 -2.38 -0.02 2.24 16 Total: -1.00 -74.22 408.16 2.05 -72.16 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: -0.62 Total: 37.12 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 4.89 Total: -17.61 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -4.20 Total: -119.99 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.04 Total: -21.62 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Total: -74.22 2.05 -72.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168463024.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.574 kcal (2) G-P(sol) polarization free energy of solvation -74.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds