Wall clock time and date at job start Tue Mar 31 2020 15:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46982 * 2 1 4 4 C 1.52994 * 109.47041 * 239.99559 * 2 1 3 5 5 C 1.53003 * 109.47133 * 300.00168 * 4 2 1 6 6 C 1.52997 * 109.47171 * 299.99775 * 5 4 2 7 7 C 1.53004 * 109.46643 * 60.00375 * 6 5 4 8 8 C 1.52995 * 109.47192 * 299.99554 * 7 6 5 9 9 H 1.09005 * 109.47069 * 300.00506 * 8 7 6 10 10 C 1.52994 * 109.47295 * 180.02562 * 8 7 6 11 11 C 1.50699 * 109.47357 * 65.00178 * 10 8 7 12 12 O 1.21284 * 119.99782 * 359.97438 * 11 10 8 13 13 N 1.34781 * 120.00400 * 180.02562 * 11 10 8 14 14 C 1.46495 * 120.00202 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47160 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47310 * 185.17232 * 15 14 13 17 17 C 1.53001 * 115.54797 * 294.65650 * 16 15 14 18 18 N 1.46503 * 109.47012 * 279.21701 * 17 16 15 19 19 C 1.36941 * 119.99966 * 176.93968 * 18 17 16 20 20 H 1.07997 * 120.00099 * 0.28896 * 19 18 17 21 21 C 1.38811 * 119.99659 * 180.27969 * 19 18 17 22 22 N 1.31618 * 120.00444 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99645 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46860 * 90.00282 * 23 21 19 25 25 H 1.48498 * 109.47049 * 209.99960 * 23 21 19 26 26 H 1.48493 * 109.46998 * 330.00154 * 23 21 19 27 27 C 1.53000 * 117.51748 * 80.35179 * 16 15 14 28 28 C 1.52995 * 117.50220 * 148.98169 * 16 15 14 29 29 H 1.09001 * 109.47276 * 300.00649 * 1 2 3 30 30 H 1.09008 * 109.47176 * 59.99921 * 1 2 3 31 31 H 1.09004 * 109.47367 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47335 * 180.02562 * 4 2 1 33 33 H 1.08997 * 109.47396 * 60.00311 * 4 2 1 34 34 H 1.09002 * 109.46708 * 180.02562 * 5 4 2 35 35 H 1.09002 * 109.47331 * 60.00424 * 5 4 2 36 36 H 1.08992 * 109.47384 * 300.00402 * 6 5 4 37 37 H 1.09004 * 109.46934 * 180.02562 * 6 5 4 38 38 H 1.09008 * 109.46447 * 179.97438 * 7 6 5 39 39 H 1.08992 * 109.47209 * 59.99919 * 7 6 5 40 40 H 1.09006 * 109.47307 * 304.99925 * 10 8 7 41 41 H 1.09006 * 109.47588 * 185.00001 * 10 8 7 42 42 H 0.97002 * 119.99493 * 359.97438 * 13 11 10 43 43 H 1.09006 * 109.47174 * 59.99353 * 14 13 11 44 44 H 1.09006 * 109.46769 * 300.00012 * 14 13 11 45 45 H 1.09003 * 109.47164 * 65.17629 * 15 14 13 46 46 H 1.08997 * 109.47548 * 305.17106 * 15 14 13 47 47 H 1.09002 * 109.47313 * 159.22652 * 17 16 15 48 48 H 1.08998 * 109.47468 * 39.22041 * 17 16 15 49 49 H 0.97005 * 119.99908 * 357.22881 * 18 17 16 50 50 H 0.96995 * 120.00020 * 179.97438 * 22 21 19 51 51 H 1.09001 * 117.49705 * 214.97092 * 27 16 15 52 52 H 1.09000 * 117.49763 * 359.97438 * 27 16 15 53 53 H 1.09001 * 117.49599 * 359.97438 * 28 16 15 54 54 H 1.09000 * 117.50170 * 144.97400 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5299 -2.1638 -1.2490 6 6 2.0399 -2.8850 0.0002 7 6 1.5298 -2.1637 1.2494 8 6 2.0399 -0.7212 1.2493 9 1 3.1299 -0.7213 1.2493 10 6 1.5304 -0.0001 2.4987 11 6 2.1317 -0.6354 3.7259 12 8 2.8925 -1.5731 3.6123 13 7 1.8232 -0.1623 4.9496 14 6 2.4073 -0.7804 6.1425 15 6 1.8979 -0.0591 7.3919 16 6 2.6052 -0.6186 8.6279 17 6 2.3036 -2.0826 8.9545 18 7 1.0231 -2.1716 9.6607 19 6 0.5128 -3.3958 10.0017 20 1 1.0567 -4.2955 9.7543 21 6 -0.7033 -3.4803 10.6656 22 7 -1.3662 -2.3839 10.9669 23 14 -1.3989 -5.1503 11.1315 24 1 -0.9166 -5.5274 12.4844 25 1 -2.8825 -5.0849 11.1353 26 1 -0.9507 -6.1658 10.1452 27 6 4.0135 -0.1030 8.9304 28 6 2.8349 0.3344 9.8024 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1299 -0.7217 -1.2490 33 1 1.6767 -0.2076 -2.1392 34 1 1.8937 -2.6778 -2.1388 35 1 0.4399 -2.1638 -1.2491 36 1 3.1299 -2.8850 0.0002 37 1 1.6769 -3.9128 0.0000 38 1 1.8929 -2.6778 2.1394 39 1 0.4399 -2.1637 1.2493 40 1 0.4440 -0.0769 2.5450 41 1 1.8187 1.0503 2.4551 42 1 1.2144 0.5874 5.0405 43 1 3.4937 -0.7036 6.0966 44 1 2.1188 -1.8307 6.1858 45 1 0.8230 -0.2132 7.4876 46 1 2.1058 1.0074 7.3061 47 1 3.0956 -2.4845 9.5865 48 1 2.2495 -2.6575 8.0301 49 1 0.5346 -1.3635 9.8829 50 1 -2.2162 -2.4431 11.4305 51 1 4.7252 -0.8067 9.3623 52 1 4.4366 0.6348 8.2486 53 1 2.4825 1.3602 9.6945 54 1 2.7708 -0.0814 10.8080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168463025.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:40 Heat of formation + Delta-G solvation = -60.279767 kcal Electronic energy + Delta-G solvation = -27654.097752 eV Core-core repulsion = 24010.348331 eV Total energy + Delta-G solvation = -3643.749420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.22847 -39.88478 -39.28515 -36.09941 -35.67636 -33.79417 -32.77098 -32.54312 -31.30423 -28.74332 -27.77260 -26.96734 -24.71823 -24.49960 -23.25185 -22.98956 -22.46043 -21.31062 -19.95718 -19.27841 -19.00259 -17.90016 -17.05992 -16.87720 -16.61114 -16.52946 -16.20883 -15.72285 -15.55078 -15.24698 -15.05191 -14.95951 -14.64263 -14.32083 -14.23488 -13.76237 -13.74379 -13.41822 -13.26337 -13.17004 -13.03088 -12.81059 -12.70072 -12.48336 -12.40539 -12.29515 -12.19597 -12.17359 -11.94603 -11.89943 -11.82071 -11.60856 -11.15188 -11.10141 -11.05433 -10.89000 -10.78428 -10.65198 -10.46475 -10.01296 -8.98695 -7.96307 -5.23986 1.44922 1.46249 1.54876 1.72483 2.25983 2.52901 2.90382 3.36146 3.69332 3.76008 3.81456 3.81556 3.87747 3.97855 4.04666 4.07096 4.23783 4.25740 4.33008 4.43059 4.46282 4.50407 4.52286 4.53339 4.59360 4.65599 4.73476 4.79308 4.83305 4.84126 4.91879 4.93384 4.97825 5.06465 5.08492 5.12329 5.17445 5.22549 5.22906 5.27762 5.30177 5.34516 5.35064 5.37007 5.44195 5.46741 5.47876 5.55310 5.62176 5.72932 6.26345 6.63630 7.33308 7.35208 8.09520 8.35761 9.26938 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.002448 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.690619 B =11437.377153 C =12747.785946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.081 4.081 3 H 0.082 0.918 4 C -0.113 4.113 5 C -0.118 4.118 6 C -0.117 4.117 7 C -0.122 4.122 8 C -0.060 4.060 9 H 0.057 0.943 10 C -0.131 4.131 11 C 0.503 3.497 12 O -0.582 6.582 13 N -0.722 5.722 14 C 0.132 3.868 15 C -0.073 4.073 16 C -0.139 4.139 17 C 0.185 3.815 18 N -0.736 5.736 19 C -0.247 4.247 20 H 0.068 0.932 21 C -0.072 4.072 22 N -0.965 5.965 23 Si 0.970 3.030 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.274 1.274 27 C -0.149 4.149 28 C -0.164 4.164 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.046 0.954 39 H 0.062 0.938 40 H 0.110 0.890 41 H 0.121 0.879 42 H 0.414 0.586 43 H 0.065 0.935 44 H 0.036 0.964 45 H 0.057 0.943 46 H 0.096 0.904 47 H 0.011 0.989 48 H 0.017 0.983 49 H 0.377 0.623 50 H 0.252 0.748 51 H 0.091 0.909 52 H 0.118 0.882 53 H 0.110 0.890 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.912 11.789 -23.952 27.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.100 4.100 3 H 0.100 0.900 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.155 4.155 7 C -0.159 4.159 8 C -0.079 4.079 9 H 0.076 0.924 10 C -0.171 4.171 11 C 0.291 3.709 12 O -0.462 6.462 13 N -0.374 5.374 14 C 0.008 3.992 15 C -0.110 4.110 16 C -0.140 4.140 17 C 0.059 3.941 18 N -0.378 5.378 19 C -0.379 4.379 20 H 0.086 0.914 21 C -0.264 4.264 22 N -0.616 5.616 23 Si 0.799 3.201 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.199 1.199 27 C -0.187 4.187 28 C -0.201 4.201 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.128 0.872 41 H 0.139 0.861 42 H 0.251 0.749 43 H 0.083 0.917 44 H 0.054 0.946 45 H 0.076 0.924 46 H 0.114 0.886 47 H 0.029 0.971 48 H 0.035 0.965 49 H 0.209 0.791 50 H 0.061 0.939 51 H 0.110 0.890 52 H 0.136 0.864 53 H 0.129 0.871 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.458 10.929 -24.024 27.426 hybrid contribution -0.897 -0.848 1.019 1.601 sum 6.560 10.081 -23.005 25.959 Atomic orbital electron populations 1.22014 0.94705 1.02054 1.02343 1.21110 0.96400 0.99201 0.93266 0.89962 1.21554 1.00327 0.95388 0.97798 1.21567 1.01115 0.95931 0.96940 1.21484 1.00153 0.98771 0.95093 1.21689 1.00274 0.96020 0.97923 1.20843 0.99638 0.94335 0.93132 0.92445 1.21866 1.02799 1.01947 0.90460 1.21443 0.80765 0.83017 0.85666 1.90667 1.38156 1.30160 1.87241 1.46021 1.49261 1.36719 1.05405 1.21089 0.97910 0.96268 0.83898 1.21078 0.99481 0.99990 0.90476 1.21437 1.00695 0.94248 0.97643 1.20279 0.87150 0.93041 0.93643 1.42465 1.21627 1.05106 1.68623 1.19593 1.01920 0.86858 1.29507 0.91377 1.25500 0.98241 1.00408 1.02278 1.69802 1.16489 1.27811 1.47510 0.85193 0.77100 0.79722 0.78076 1.21317 1.21836 1.19884 1.23095 0.89793 1.03125 1.02662 1.22915 1.02855 0.99454 0.94889 0.91853 0.91944 0.92724 0.92530 0.90728 0.91786 0.91367 0.93155 0.92722 0.93501 0.91890 0.87152 0.86127 0.74901 0.91674 0.94596 0.92389 0.88580 0.97097 0.96539 0.79078 0.93938 0.89030 0.86381 0.87144 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.15 71.98 0.59 -1.10 16 2 C -0.08 -1.00 2.72 -10.79 -0.03 -1.03 16 3 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.11 -1.42 5.45 30.59 0.17 -1.25 16 5 C -0.12 -1.69 5.65 30.59 0.17 -1.51 16 6 C -0.12 -2.24 5.92 30.59 0.18 -2.06 16 7 C -0.12 -2.61 4.67 30.59 0.14 -2.46 16 8 C -0.06 -1.06 1.61 -10.80 -0.02 -1.08 16 9 H 0.06 1.24 7.95 -2.38 -0.02 1.22 16 10 C -0.13 -2.03 4.67 29.85 0.14 -1.90 16 11 C 0.50 12.29 7.55 87.66 0.66 12.95 16 12 O -0.58 -19.63 13.96 -3.04 -0.04 -19.68 16 13 N -0.72 -15.96 5.56 -463.06 -2.57 -18.54 16 14 C 0.13 3.68 5.43 86.38 0.47 4.15 16 15 C -0.07 -1.94 5.21 30.59 0.16 -1.78 16 16 C -0.14 -4.37 1.53 -52.18 -0.08 -4.45 16 17 C 0.19 7.78 6.12 86.38 0.53 8.31 16 18 N -0.74 -38.23 5.56 -343.44 -1.91 -40.14 16 19 C -0.25 -14.24 9.99 84.03 0.84 -13.40 16 20 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 21 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 22 N -0.97 -59.38 13.06 21.65 0.28 -59.10 16 23 Si 0.97 47.14 29.55 68.60 2.03 49.16 16 24 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 25 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 27 C -0.15 -3.74 9.90 30.59 0.30 -3.43 16 28 C -0.16 -4.75 9.83 30.59 0.30 -4.45 16 29 H 0.06 0.61 6.55 -2.39 -0.02 0.59 16 30 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.05 0.70 4.81 -2.38 -0.01 0.69 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.93 6.43 -2.39 -0.02 0.91 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.05 1.35 5.95 -2.38 -0.01 1.34 16 39 H 0.06 1.25 6.43 -2.39 -0.02 1.24 16 40 H 0.11 1.41 6.71 -2.38 -0.02 1.39 16 41 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.41 6.39 8.47 -92.71 -0.79 5.61 16 43 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 44 H 0.04 1.27 6.96 -2.38 -0.02 1.25 16 45 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.10 1.93 8.09 -2.39 -0.02 1.91 16 47 H 0.01 0.48 7.94 -2.39 -0.02 0.46 16 48 H 0.02 0.73 6.72 -2.39 -0.02 0.72 16 49 H 0.38 20.51 7.61 -92.70 -0.71 19.81 16 50 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 51 H 0.09 2.32 8.08 -2.39 -0.02 2.30 16 52 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 53 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 54 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -71.73 409.61 2.16 -69.57 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: -0.61 Total: 36.96 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 4.99 Total: -18.24 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -4.20 Total: -117.78 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.04 Total: -19.68 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.16 kcal Total: -71.73 2.16 -69.57 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168463025.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.289 kcal (2) G-P(sol) polarization free energy of solvation -71.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds