Wall clock time and date at job start Tue Mar 31 2020 15:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47065 * 2 1 4 4 C 1.52998 * 109.47228 * 120.00053 * 2 1 3 5 5 C 1.52992 * 109.47351 * 180.02562 * 4 2 1 6 6 C 1.53007 * 109.47087 * 300.00122 * 5 4 2 7 7 C 1.52998 * 109.47124 * 59.99739 * 6 5 4 8 8 C 1.53001 * 109.47228 * 300.00103 * 7 6 5 9 9 H 1.08999 * 109.47065 * 300.00053 * 8 7 6 10 10 C 1.52998 * 109.47228 * 179.97438 * 8 7 6 11 11 C 1.50698 * 109.47421 * 64.99991 * 10 8 7 12 12 O 1.21282 * 119.99700 * 359.97438 * 11 10 8 13 13 N 1.34775 * 120.00469 * 180.02562 * 11 10 8 14 14 C 1.46492 * 119.99999 * 180.02562 * 13 11 10 15 15 C 1.53008 * 109.47175 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47415 * 175.45603 * 15 14 13 17 17 C 1.52998 * 115.55059 * 279.32383 * 16 15 14 18 18 N 1.46505 * 109.47062 * 294.95224 * 17 16 15 19 19 C 1.36928 * 120.00160 * 174.37023 * 18 17 16 20 20 H 1.08006 * 119.99952 * 359.97438 * 19 18 17 21 21 C 1.38817 * 120.00337 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99424 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00326 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47119 * 59.99985 * 23 21 19 25 25 H 1.48496 * 109.47053 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47231 * 300.00148 * 23 21 19 27 27 C 1.52997 * 117.50126 * 133.61251 * 16 15 14 28 28 C 1.52997 * 60.00096 * 252.51216 * 27 16 15 29 29 H 1.09000 * 109.47160 * 299.99480 * 1 2 3 30 30 H 1.08997 * 109.47599 * 59.99879 * 1 2 3 31 31 H 1.08999 * 109.47065 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46972 * 300.00351 * 4 2 1 33 33 H 1.09003 * 109.47053 * 59.99507 * 4 2 1 34 34 H 1.09003 * 109.47448 * 59.99745 * 5 4 2 35 35 H 1.08997 * 109.47722 * 180.02562 * 5 4 2 36 36 H 1.08999 * 109.47021 * 299.99776 * 6 5 4 37 37 H 1.09001 * 109.47379 * 180.02562 * 6 5 4 38 38 H 1.09007 * 109.47192 * 180.02562 * 7 6 5 39 39 H 1.08999 * 109.47141 * 60.00110 * 7 6 5 40 40 H 1.08995 * 109.47185 * 185.00392 * 10 8 7 41 41 H 1.09002 * 109.47039 * 305.00385 * 10 8 7 42 42 H 0.96994 * 119.99718 * 359.97438 * 13 11 10 43 43 H 1.09005 * 109.47403 * 299.99659 * 14 13 11 44 44 H 1.09003 * 109.47988 * 59.99970 * 14 13 11 45 45 H 1.09002 * 109.46284 * 295.45536 * 15 14 13 46 46 H 1.08994 * 109.46930 * 55.45195 * 15 14 13 47 47 H 1.08999 * 109.47061 * 54.94872 * 17 16 15 48 48 H 1.08996 * 109.47421 * 174.95176 * 17 16 15 49 49 H 0.97001 * 119.99405 * 354.36859 * 18 17 16 50 50 H 0.97003 * 120.00075 * 180.02562 * 22 21 19 51 51 H 1.09006 * 117.49380 * 0.02562 * 27 16 15 52 52 H 1.08993 * 117.49829 * 145.01647 * 27 16 15 53 53 H 1.08999 * 117.49740 * 252.50657 * 28 27 16 54 54 H 1.08998 * 117.50199 * 107.49283 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5699 -0.7207 1.2496 6 6 4.0805 -1.4416 0.0003 7 6 3.5705 -0.7203 -1.2490 8 6 2.0405 -0.7209 -1.2493 9 1 1.6775 -1.7487 -1.2495 10 6 1.5305 0.0009 -2.4982 11 6 1.9296 -0.7764 -3.7259 12 8 2.5604 -1.8062 -3.6132 13 7 1.5866 -0.3269 -4.9493 14 6 1.9742 -1.0829 -6.1427 15 6 1.4654 -0.3604 -7.3918 16 6 1.9660 -1.0877 -8.6413 17 6 3.4046 -0.7726 -9.0563 18 7 3.5019 0.6349 -9.4508 19 6 4.7219 1.1786 -9.7525 20 1 5.6124 0.5699 -9.6993 21 6 4.8141 2.5122 -10.1268 22 7 3.7287 3.2538 -10.1921 23 14 6.4784 3.2541 -10.5377 24 1 7.0799 2.5188 -11.6791 25 1 6.3064 4.6825 -10.9053 26 1 7.3718 3.1506 -9.3562 27 6 0.9524 -1.3587 -9.7548 28 6 1.4567 -2.5101 -8.8825 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6767 -0.2075 2.1391 33 1 1.6766 -1.7489 1.2492 34 1 3.9330 0.3071 1.2498 35 1 3.9334 -1.2349 2.1393 36 1 3.7176 -2.4694 0.0000 37 1 5.1705 -1.4416 0.0007 38 1 3.9338 -1.2342 -2.1390 39 1 3.9334 0.3075 -1.2487 40 1 0.4442 0.0788 -2.4547 41 1 1.9648 0.9996 -2.5434 42 1 1.0825 0.4968 -5.0395 43 1 3.0605 -1.1615 -6.1862 44 1 1.5392 -2.0814 -6.0977 45 1 0.3754 -0.3525 -7.3881 46 1 1.8361 0.6646 -7.3949 47 1 4.0744 -0.9620 -8.2175 48 1 3.6872 -1.4060 -9.8971 49 1 2.7021 1.1817 -9.4982 50 1 3.7929 4.1856 -10.4540 51 1 -0.0712 -1.0185 -9.5973 52 1 1.3102 -1.3124 -10.7833 53 1 2.1462 -3.2213 -9.3372 54 1 0.7649 -2.9278 -8.1510 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168463026.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:44 Heat of formation + Delta-G solvation = -63.235885 kcal Electronic energy + Delta-G solvation = -27634.386079 eV Core-core repulsion = 23990.508471 eV Total energy + Delta-G solvation = -3643.877607 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.15875 -39.78781 -39.16798 -36.08673 -35.68530 -34.04823 -32.91331 -32.78774 -31.23223 -28.60739 -27.77450 -26.75146 -24.69624 -24.52788 -23.20784 -22.74857 -21.96460 -21.26565 -20.57140 -19.92724 -19.01539 -17.87370 -17.04930 -16.85458 -16.64524 -16.23142 -15.90710 -15.69094 -15.41193 -15.26571 -15.18714 -14.91094 -14.80448 -14.56065 -14.21219 -13.85353 -13.72282 -13.32168 -13.16799 -13.03677 -12.93775 -12.77127 -12.65920 -12.60562 -12.44368 -12.31576 -12.28411 -12.17366 -11.92763 -11.86203 -11.81371 -11.69621 -11.28555 -11.15941 -11.08763 -10.91364 -10.80903 -10.63326 -10.45547 -10.01262 -8.98294 -7.95279 -5.22876 1.45754 1.48228 1.54409 1.71220 2.26325 2.53854 2.89798 3.37314 3.69508 3.71905 3.81494 3.83726 3.85599 3.97303 4.04462 4.09358 4.17746 4.25570 4.29468 4.41304 4.43904 4.49353 4.50400 4.57530 4.62278 4.66973 4.72210 4.76730 4.82965 4.85224 4.91220 4.93620 4.97113 5.01811 5.07194 5.09376 5.18438 5.22793 5.24837 5.27511 5.30916 5.33254 5.33546 5.38035 5.40760 5.47509 5.48255 5.53311 5.59639 5.68151 6.27052 6.61902 7.32916 7.34235 8.10054 8.36611 9.27722 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012092 B = 0.002529 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.090777 B =11070.704321 C =12373.773546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.083 4.083 3 H 0.075 0.925 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.122 4.122 8 C -0.059 4.059 9 H 0.059 0.941 10 C -0.135 4.135 11 C 0.504 3.496 12 O -0.580 6.580 13 N -0.724 5.724 14 C 0.135 3.865 15 C -0.076 4.076 16 C -0.140 4.140 17 C 0.188 3.812 18 N -0.734 5.734 19 C -0.248 4.248 20 H 0.068 0.932 21 C -0.070 4.070 22 N -0.965 5.965 23 Si 0.970 3.030 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.280 1.280 27 C -0.163 4.163 28 C -0.151 4.151 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.121 0.879 41 H 0.107 0.893 42 H 0.413 0.587 43 H 0.037 0.963 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.058 0.942 47 H 0.015 0.985 48 H 0.012 0.988 49 H 0.377 0.623 50 H 0.252 0.748 51 H 0.109 0.891 52 H 0.079 0.921 53 H 0.095 0.905 54 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.665 -7.959 21.720 25.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.102 4.102 3 H 0.094 0.906 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.159 4.159 8 C -0.078 4.078 9 H 0.077 0.923 10 C -0.174 4.174 11 C 0.293 3.707 12 O -0.461 6.461 13 N -0.376 5.376 14 C 0.011 3.989 15 C -0.114 4.114 16 C -0.140 4.140 17 C 0.061 3.939 18 N -0.377 5.377 19 C -0.380 4.380 20 H 0.086 0.914 21 C -0.263 4.263 22 N -0.615 5.615 23 Si 0.799 3.201 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.200 4.200 28 C -0.189 4.189 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.139 0.861 41 H 0.125 0.875 42 H 0.249 0.751 43 H 0.056 0.944 44 H 0.087 0.913 45 H 0.108 0.892 46 H 0.077 0.923 47 H 0.033 0.967 48 H 0.029 0.971 49 H 0.209 0.791 50 H 0.061 0.939 51 H 0.127 0.873 52 H 0.098 0.902 53 H 0.113 0.887 54 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.030 -8.696 21.765 25.494 hybrid contribution 0.848 1.007 -0.863 1.574 sum -9.182 -7.689 20.902 24.090 Atomic orbital electron populations 1.21917 0.94322 1.01952 1.02553 1.21147 0.96120 0.99490 0.93424 0.90625 1.21575 0.95088 1.00606 0.97657 1.21538 0.96115 1.00678 0.97139 1.21488 0.99921 0.99150 0.94899 1.21676 0.95820 1.00238 0.98192 1.20859 0.94926 0.99017 0.92959 0.92255 1.21901 1.04620 1.00196 0.90710 1.21372 0.78299 0.85474 0.85575 1.90651 1.41410 1.26760 1.87241 1.46062 1.57714 1.28217 1.05584 1.21101 0.98827 0.95329 0.83667 1.21091 1.00944 0.98621 0.90702 1.21415 0.94582 1.00211 0.97841 1.20224 0.93090 0.85224 0.95316 1.42409 1.06113 1.07413 1.81775 1.19552 0.87465 0.93911 1.37037 0.91376 1.25483 1.00424 0.97065 1.03331 1.69792 1.28387 1.07325 1.56032 0.85272 0.79691 0.77056 0.78109 1.20605 1.21789 1.20666 1.23009 0.98758 1.02818 0.95459 1.23048 1.03100 0.89966 1.02750 0.91775 0.91607 0.93026 0.90751 0.92458 0.91802 0.91469 0.92946 0.92545 0.93180 0.92415 0.86112 0.87522 0.75106 0.94442 0.91316 0.89223 0.92332 0.96676 0.97052 0.79054 0.93933 0.87279 0.90194 0.88697 0.86789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.85 71.98 0.64 -0.98 16 2 C -0.08 -1.12 2.25 -10.79 -0.02 -1.14 16 3 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.11 -1.47 5.20 30.59 0.16 -1.31 16 5 C -0.12 -1.72 5.92 30.59 0.18 -1.53 16 6 C -0.12 -2.24 5.92 30.60 0.18 -2.06 16 7 C -0.12 -2.69 4.94 30.59 0.15 -2.54 16 8 C -0.06 -1.08 1.37 -10.79 -0.01 -1.10 16 9 H 0.06 1.32 7.96 -2.39 -0.02 1.30 16 10 C -0.13 -2.30 4.96 29.85 0.15 -2.15 16 11 C 0.50 12.84 7.55 87.66 0.66 13.50 16 12 O -0.58 -19.60 13.96 -3.04 -0.04 -19.64 16 13 N -0.72 -17.17 5.56 -463.06 -2.57 -19.74 16 14 C 0.13 3.77 5.51 86.38 0.48 4.25 16 15 C -0.08 -2.14 5.24 30.60 0.16 -1.98 16 16 C -0.14 -4.39 1.52 -52.18 -0.08 -4.47 16 17 C 0.19 7.82 6.10 86.38 0.53 8.34 16 18 N -0.73 -37.67 5.30 -343.45 -1.82 -39.48 16 19 C -0.25 -14.12 9.99 84.04 0.84 -13.28 16 20 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 21 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 22 N -0.96 -58.65 13.06 21.65 0.28 -58.36 16 23 Si 0.97 46.62 29.55 68.60 2.03 48.65 16 24 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 25 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 27 C -0.16 -4.56 9.90 30.59 0.30 -4.25 16 28 C -0.15 -3.75 9.57 30.59 0.29 -3.46 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.61 6.32 -2.39 -0.02 0.59 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.05 1.45 5.95 -2.38 -0.01 1.44 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.12 1.43 6.17 -2.39 -0.01 1.42 16 41 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.41 7.55 8.47 -92.71 -0.79 6.76 16 43 H 0.04 1.30 7.69 -2.38 -0.02 1.28 16 44 H 0.07 1.85 7.80 -2.39 -0.02 1.83 16 45 H 0.09 2.03 7.94 -2.39 -0.02 2.01 16 46 H 0.06 2.00 7.64 -2.39 -0.02 1.98 16 47 H 0.02 0.66 7.69 -2.39 -0.02 0.65 16 48 H 0.01 0.49 8.09 -2.39 -0.02 0.47 16 49 H 0.38 20.24 7.46 -92.71 -0.69 19.55 16 50 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 51 H 0.11 2.59 8.08 -2.38 -0.02 2.57 16 52 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 53 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 54 H 0.11 2.32 7.98 -2.39 -0.02 2.30 16 Total: -1.00 -69.68 416.26 2.33 -67.36 By element: Atomic # 1 Polarization: 39.61 SS G_CDS: -0.62 Total: 39.00 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 5.07 Total: -17.78 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -4.11 Total: -117.59 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.04 Total: -19.64 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -69.68 2.33 -67.36 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168463026.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.120 kcal (2) G-P(sol) polarization free energy of solvation -69.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds