Wall clock time and date at job start Tue Mar 31 2020 14:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.46931 * 2 1 4 4 O 1.21279 * 119.99808 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00023 * 180.02562 * 3 2 1 6 6 C 1.46919 * 120.63255 * 179.97438 * 5 3 2 7 7 C 1.53195 * 108.89273 * 126.34238 * 6 5 3 8 8 C 1.53346 * 109.14901 * 54.57640 * 7 6 5 9 9 C 1.53004 * 109.41904 * 178.67276 * 8 7 6 10 10 N 1.46901 * 109.47273 * 295.13166 * 9 8 7 11 11 C 1.46892 * 110.99941 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47390 * 275.00176 * 11 10 9 13 13 C 1.53001 * 109.47334 * 180.02562 * 12 11 10 14 14 C 1.53008 * 109.47189 * 59.99520 * 13 12 11 15 15 C 1.50701 * 109.46828 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99009 * 120.00248 * 15 14 13 17 17 C 1.37869 * 120.00383 * 300.00252 * 15 14 13 18 18 N 1.31519 * 120.00100 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00052 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47107 * 59.99656 * 19 17 15 21 21 H 1.48500 * 109.47319 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47108 * 300.00137 * 19 17 15 23 23 C 1.52988 * 109.47196 * 300.00341 * 14 13 12 24 24 C 1.53001 * 109.47179 * 154.99955 * 11 10 9 25 25 C 1.53034 * 109.61010 * 298.71225 * 8 7 6 26 26 C 1.46933 * 120.62741 * 0.02562 * 5 3 2 27 27 H 1.09006 * 109.47133 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47074 * 299.99864 * 1 2 3 29 29 H 1.09001 * 109.47188 * 59.99897 * 1 2 3 30 30 H 1.09001 * 109.46646 * 239.99960 * 2 1 3 31 31 H 1.09001 * 109.47188 * 120.00103 * 2 1 3 32 32 H 1.09002 * 109.58751 * 246.20189 * 6 5 3 33 33 H 1.08996 * 109.58750 * 6.48373 * 6 5 3 34 34 H 1.08997 * 109.49914 * 174.65962 * 7 6 5 35 35 H 1.09002 * 109.49585 * 294.75599 * 7 6 5 36 36 H 1.09001 * 109.42242 * 58.75065 * 8 7 6 37 37 H 1.09001 * 109.46592 * 55.13132 * 9 8 7 38 38 H 1.08997 * 109.47133 * 175.12697 * 9 8 7 39 39 H 1.00898 * 110.99851 * 56.04100 * 10 9 8 40 40 H 1.08997 * 109.47310 * 35.00328 * 11 10 9 41 41 H 1.09011 * 109.46742 * 299.99790 * 12 11 10 42 42 H 1.08988 * 109.47452 * 59.99723 * 12 11 10 43 43 H 1.08997 * 109.47146 * 300.00016 * 13 12 11 44 44 H 1.08996 * 109.47133 * 179.97438 * 13 12 11 45 45 H 1.08997 * 109.46671 * 60.00206 * 14 13 12 46 46 H 0.97003 * 120.00201 * 180.02562 * 18 17 15 47 47 H 1.09009 * 109.47421 * 299.99932 * 23 14 13 48 48 H 1.09002 * 109.47282 * 180.02562 * 23 14 13 49 49 H 1.09005 * 109.47023 * 300.00062 * 24 11 10 50 50 H 1.08999 * 109.47066 * 59.99614 * 24 11 10 51 51 H 1.08994 * 109.50232 * 301.42239 * 25 8 7 52 52 H 1.09000 * 109.49784 * 181.32304 * 25 8 7 53 53 H 1.08994 * 109.58580 * 353.38021 * 26 5 3 54 54 H 1.09006 * 109.57831 * 113.65514 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8623 3.0468 -0.0011 7 6 4.8398 3.2178 1.1660 8 6 5.9318 2.1456 1.0687 9 6 6.9304 2.3312 2.2131 10 7 7.6261 3.6150 2.0525 11 6 8.5947 3.8280 3.1361 12 6 7.8822 4.4400 4.3439 13 6 8.8912 4.6625 5.4724 14 6 9.9909 5.6125 4.9935 15 6 10.9842 5.8320 6.1053 16 1 12.0204 5.5617 5.9647 17 6 10.5703 6.3778 7.3018 18 7 9.3084 6.7064 7.4732 19 14 11.8019 6.6506 8.6796 20 1 12.8688 7.5729 8.2145 21 1 11.1101 7.2454 9.8514 22 1 12.4060 5.3508 9.0681 23 6 10.7032 5.0004 3.7858 24 6 9.6947 4.7777 2.6577 25 6 5.2976 0.7563 1.1659 26 6 4.3244 0.5609 -0.0017 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 4.3767 3.2473 -0.9409 33 1 3.0298 3.7407 0.1149 34 1 5.2925 4.2082 1.1194 35 1 4.3040 3.1062 2.1087 36 1 6.4506 2.2421 0.1150 37 1 6.3983 2.3228 3.1644 38 1 7.6573 1.5193 2.1962 39 1 6.9687 4.3785 2.0002 40 1 9.0373 2.8735 3.4207 41 1 7.4397 5.3947 4.0593 42 1 7.0986 3.7636 4.6848 43 1 9.3341 3.7081 5.7571 44 1 8.3837 5.0989 6.3327 45 1 9.5479 6.5668 4.7088 46 1 9.0173 7.0908 8.3149 47 1 11.1462 4.0459 4.0705 48 1 11.4869 5.6770 3.4449 49 1 10.2023 4.3416 1.7972 50 1 9.2521 5.7323 2.3730 51 1 4.7577 0.6678 2.1085 52 1 6.0776 -0.0037 1.1201 53 1 3.7970 -0.3856 0.1164 54 1 4.8746 0.5576 -0.9427 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173331483.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:25 Heat of formation + Delta-G solvation = -91.684898 kcal Electronic energy + Delta-G solvation = -27862.714900 eV Core-core repulsion = 24217.603651 eV Total energy + Delta-G solvation = -3645.111249 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.26088 -39.90019 -38.72849 -36.45965 -34.77324 -33.91994 -33.16679 -31.91630 -31.32199 -30.24044 -27.73748 -26.06304 -25.53315 -23.88094 -23.40891 -23.13570 -22.05297 -21.27308 -20.45925 -19.79788 -18.39025 -18.24241 -16.93290 -16.84160 -16.73077 -16.45331 -16.01465 -15.45512 -15.15398 -14.98341 -14.97224 -14.74877 -14.52372 -14.32970 -14.31626 -13.97314 -13.65356 -13.55945 -13.46807 -13.04476 -12.90757 -12.84361 -12.79695 -12.61065 -12.56756 -12.30306 -12.18610 -12.14832 -12.03221 -11.80032 -11.75961 -11.66267 -11.48400 -11.30881 -11.15749 -10.77974 -10.75852 -10.56898 -10.37247 -9.64787 -9.21912 -8.07263 -6.21743 1.40197 1.41248 1.48883 1.63029 2.05187 2.42887 3.17687 3.22879 3.56269 3.83140 3.84505 3.89445 3.99100 4.13280 4.16333 4.20068 4.25390 4.33468 4.39407 4.44325 4.56697 4.59573 4.61411 4.69151 4.71197 4.76223 4.80097 4.84701 4.87289 4.93016 4.93933 4.98005 4.99562 5.03529 5.06663 5.11012 5.12450 5.21286 5.27055 5.32939 5.33692 5.40784 5.47404 5.51430 5.59610 5.61252 5.68443 6.04186 6.18836 6.21009 6.41798 6.43479 6.52207 6.91551 7.18460 7.46263 8.95770 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.026458 B = 0.002041 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.023311 B =13714.881336 C =14145.447899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.137 4.137 3 C 0.500 3.500 4 O -0.596 6.596 5 N -0.612 5.612 6 C 0.113 3.887 7 C -0.125 4.125 8 C -0.075 4.075 9 C 0.064 3.936 10 N -0.681 5.681 11 C 0.103 3.897 12 C -0.131 4.131 13 C -0.098 4.098 14 C 0.045 3.955 15 C -0.534 4.534 16 H 0.051 0.949 17 C 0.009 3.991 18 N -0.918 5.918 19 Si 0.952 3.048 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.271 1.271 23 C -0.102 4.102 24 C -0.092 4.092 25 C -0.126 4.126 26 C 0.106 3.894 27 H 0.086 0.914 28 H 0.040 0.960 29 H 0.045 0.955 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.017 0.983 38 H 0.077 0.923 39 H 0.338 0.662 40 H 0.071 0.929 41 H 0.043 0.957 42 H 0.047 0.953 43 H 0.026 0.974 44 H 0.053 0.947 45 H -0.011 1.011 46 H 0.259 0.741 47 H 0.048 0.952 48 H 0.045 0.955 49 H 0.073 0.927 50 H 0.048 0.952 51 H 0.058 0.942 52 H 0.098 0.902 53 H 0.112 0.888 54 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.866 -18.132 -17.913 28.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.177 4.177 3 C 0.291 3.709 4 O -0.478 6.478 5 N -0.345 5.345 6 C -0.010 4.010 7 C -0.164 4.164 8 C -0.094 4.094 9 C -0.065 4.065 10 N -0.311 5.311 11 C -0.007 4.007 12 C -0.170 4.170 13 C -0.136 4.136 14 C 0.027 3.973 15 C -0.573 4.573 16 H 0.070 0.930 17 C -0.189 4.189 18 N -0.558 5.558 19 Si 0.777 3.223 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.140 4.140 24 C -0.130 4.130 25 C -0.165 4.165 26 C -0.016 4.016 27 H 0.105 0.895 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.139 0.861 31 H 0.133 0.867 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.035 0.965 38 H 0.095 0.905 39 H 0.157 0.843 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.045 0.955 44 H 0.072 0.928 45 H 0.007 0.993 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.064 0.936 49 H 0.092 0.908 50 H 0.067 0.933 51 H 0.077 0.923 52 H 0.117 0.883 53 H 0.131 0.869 54 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.915 -17.844 -18.238 28.160 hybrid contribution -0.060 1.181 2.151 2.454 sum -11.975 -16.662 -16.087 26.073 Atomic orbital electron populations 1.21545 0.93799 1.02602 1.01618 1.21734 0.97912 0.91570 1.06444 1.21598 0.81683 0.93073 0.74567 1.90671 1.56174 1.48507 1.52424 1.48332 1.05829 1.07930 1.72387 1.21499 0.97217 0.83325 0.98987 1.21969 0.96502 1.00158 0.97733 1.21146 0.94143 0.94840 0.99305 1.22050 0.95860 0.92053 0.96543 1.60740 1.20053 1.04946 1.45367 1.21386 0.92810 0.98164 0.88339 1.22139 0.98082 0.99348 0.97440 1.21335 0.96899 0.97600 0.97812 1.18627 0.93228 0.93039 0.92442 1.21636 0.95347 1.40732 0.99548 0.93048 1.25765 0.96830 0.95410 1.00885 1.70024 1.16297 1.43712 1.25744 0.85711 0.79285 0.78562 0.78699 1.19691 1.21126 1.19582 1.21490 0.97523 0.99523 0.95468 1.21382 0.95701 0.98584 0.97357 1.21938 0.99172 0.96786 0.98607 1.22038 0.90554 0.89511 0.99480 0.89496 0.94054 0.93581 0.86111 0.86716 0.90206 0.91587 0.90592 0.93412 0.89438 0.96466 0.90493 0.84288 0.91122 0.93817 0.93381 0.95526 0.92843 0.99251 0.93230 0.93342 0.93602 0.90815 0.93329 0.92288 0.88334 0.86944 0.89459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.20 71.98 0.66 -1.09 16 2 C -0.14 -1.40 4.77 29.85 0.14 -1.25 16 3 C 0.50 9.70 7.70 87.66 0.67 10.38 16 4 O -0.60 -17.53 15.39 -3.03 -0.05 -17.58 16 5 N -0.61 -9.63 2.97 -818.81 -2.43 -12.06 16 6 C 0.11 2.04 6.42 86.36 0.55 2.60 16 7 C -0.13 -2.25 5.18 30.78 0.16 -2.09 16 8 C -0.08 -1.14 2.36 -10.66 -0.03 -1.16 16 9 C 0.06 1.30 4.94 86.30 0.43 1.72 16 10 N -0.68 -16.85 6.25 -491.59 -3.07 -19.93 16 11 C 0.10 3.21 2.47 44.92 0.11 3.32 16 12 C -0.13 -4.90 5.17 30.59 0.16 -4.75 16 13 C -0.10 -4.64 4.98 30.60 0.15 -4.49 16 14 C 0.05 2.27 2.10 -11.54 -0.02 2.25 16 15 C -0.53 -29.90 8.56 25.60 0.22 -29.68 16 16 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 17 C 0.01 0.52 5.30 84.65 0.45 0.97 16 18 N -0.92 -54.03 11.32 21.44 0.24 -53.78 16 19 Si 0.95 44.20 29.54 68.60 2.03 46.22 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 21 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 C -0.10 -4.17 5.14 30.57 0.16 -4.01 16 24 C -0.09 -3.08 5.53 30.58 0.17 -2.91 16 25 C -0.13 -1.32 5.37 30.69 0.16 -1.15 16 26 C 0.11 0.86 6.34 86.38 0.55 1.41 16 27 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.04 0.69 8.10 -2.39 -0.02 0.67 16 29 H 0.04 0.72 8.10 -2.39 -0.02 0.70 16 30 H 0.12 0.56 7.94 -2.39 -0.02 0.54 16 31 H 0.11 0.70 7.69 -2.39 -0.02 0.68 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.54 7.00 -2.39 -0.02 1.52 16 34 H 0.08 1.41 6.63 -2.39 -0.02 1.39 16 35 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.02 0.40 7.44 -2.39 -0.02 0.38 16 38 H 0.08 1.49 8.06 -2.39 -0.02 1.47 16 39 H 0.34 8.37 6.69 -89.70 -0.60 7.77 16 40 H 0.07 2.23 7.80 -2.39 -0.02 2.21 16 41 H 0.04 1.70 8.13 -2.38 -0.02 1.68 16 42 H 0.05 1.68 7.45 -2.39 -0.02 1.66 16 43 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.05 2.93 6.07 -2.39 -0.01 2.91 16 45 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 46 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 47 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 48 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 50 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 51 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 53 H 0.11 0.35 5.93 -2.39 -0.01 0.33 16 54 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 Total: -1.00 -69.41 403.26 1.66 -67.75 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.24 Total: 19.32 kcal Atomic # 6 Polarization: -34.64 SS G_CDS: 4.70 Total: -29.95 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -5.26 Total: -85.77 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.05 Total: -17.58 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -69.41 1.66 -67.75 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331483.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.931 kcal (2) G-P(sol) polarization free energy of solvation -69.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds