Wall clock time and date at job start Tue Mar 31 2020 14:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46986 * 2 1 4 4 O 1.21284 * 120.00042 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99643 * 180.02562 * 3 2 1 6 6 C 1.46504 * 119.99856 * 179.97438 * 5 3 2 7 7 H 1.09006 * 109.47037 * 34.99818 * 6 5 3 8 8 C 1.53004 * 109.47167 * 154.99717 * 6 5 3 9 9 C 1.52994 * 109.46884 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.47452 * 299.99998 * 9 8 6 11 11 H 1.08998 * 109.46856 * 300.00525 * 10 9 8 12 12 N 1.46898 * 109.47091 * 180.02562 * 10 9 8 13 13 C 1.46902 * 110.99837 * 155.00016 * 12 10 9 14 14 C 1.52999 * 109.47165 * 154.99341 * 13 12 10 15 15 C 1.52995 * 109.47175 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47600 * 300.00420 * 15 14 13 17 17 C 1.50694 * 109.47460 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00179 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00472 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99350 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00608 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47326 * 270.00340 * 21 19 17 23 23 H 1.48506 * 109.46545 * 30.00090 * 21 19 17 24 24 H 1.48498 * 109.47210 * 149.99801 * 21 19 17 25 25 C 1.53001 * 109.46903 * 60.00049 * 16 15 14 26 26 C 1.52997 * 109.47407 * 275.00036 * 13 12 10 27 27 C 1.52996 * 109.46861 * 60.00007 * 10 9 8 28 28 C 1.52999 * 109.46954 * 275.00115 * 6 5 3 29 29 H 1.09001 * 109.47270 * 300.00243 * 1 2 3 30 30 H 1.08995 * 109.46963 * 60.00740 * 1 2 3 31 31 H 1.09006 * 109.46838 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47270 * 239.99757 * 2 1 3 33 33 H 1.09005 * 109.46929 * 119.99812 * 2 1 3 34 34 H 0.97003 * 120.00316 * 359.97438 * 5 3 2 35 35 H 1.08996 * 109.46557 * 60.00171 * 8 6 5 36 36 H 1.08999 * 109.47264 * 300.00024 * 8 6 5 37 37 H 1.09000 * 109.47215 * 180.02562 * 9 8 6 38 38 H 1.08998 * 109.47519 * 60.00117 * 9 8 6 39 39 H 1.00899 * 111.00256 * 31.04629 * 12 10 9 40 40 H 1.09006 * 109.46860 * 34.99791 * 13 12 10 41 41 H 1.09006 * 109.46864 * 60.00453 * 14 13 12 42 42 H 1.09001 * 109.47636 * 300.00625 * 14 13 12 43 43 H 1.09003 * 109.47604 * 180.02562 * 15 14 13 44 44 H 1.08999 * 109.47292 * 60.00606 * 15 14 13 45 45 H 1.08998 * 109.47382 * 300.00079 * 16 15 14 46 46 H 0.97005 * 119.99661 * 179.97438 * 20 19 17 47 47 H 1.09000 * 109.47809 * 59.99897 * 25 16 15 48 48 H 1.09000 * 109.47703 * 180.02562 * 25 16 15 49 49 H 1.09007 * 109.46479 * 300.00040 * 26 13 12 50 50 H 1.08997 * 109.46852 * 59.99616 * 26 13 12 51 51 H 1.09006 * 109.47076 * 60.00286 * 27 10 9 52 52 H 1.08999 * 109.47051 * 180.02562 * 27 10 9 53 53 H 1.09001 * 109.47094 * 299.99259 * 28 6 5 54 54 H 1.08991 * 109.47561 * 59.99987 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6670 -0.0005 6 6 3.8457 3.0483 -0.0011 7 1 3.1733 3.6717 0.5884 8 6 5.2485 3.0935 0.6081 9 6 5.7582 4.5361 0.6081 10 6 5.8092 5.0590 -0.8289 11 1 6.4816 4.4360 -1.4186 12 7 6.2991 6.4439 -0.8289 13 6 6.9163 6.7839 -2.1179 14 6 6.8465 8.2970 -2.3334 15 6 7.4899 8.6512 -3.6755 16 6 8.9528 8.2032 -3.6740 17 6 9.5863 8.5515 -4.9962 18 1 9.0037 9.0429 -5.7614 19 6 10.9095 8.2420 -5.2296 20 7 11.6188 7.6432 -4.2980 21 14 11.6946 8.6731 -6.8689 22 1 11.5209 7.5409 -7.8139 23 1 11.0440 9.8866 -7.4252 24 1 13.1429 8.9347 -6.6705 25 6 9.0225 6.6900 -3.4586 26 6 8.3792 6.3357 -2.1170 27 6 4.4064 5.0138 -1.4381 28 6 3.8967 3.5706 -1.4383 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9877 0.9297 -0.0005 35 1 5.9208 2.4702 0.0186 36 1 5.2122 2.7214 1.6320 37 1 6.7577 4.5683 1.0417 38 1 5.0858 5.1591 1.1978 39 1 6.9426 6.5998 -0.0676 40 1 6.3817 6.2774 -2.9216 41 1 7.3812 8.8035 -1.5297 42 1 5.8044 8.6164 -2.3341 43 1 7.4407 9.7293 -3.8290 44 1 6.9557 8.1448 -4.4795 45 1 9.4871 8.7096 -2.8702 46 1 12.5496 7.4250 -4.4623 47 1 8.4883 6.1835 -4.2624 48 1 10.0647 6.3708 -3.4570 49 1 8.9137 6.8422 -1.3132 50 1 8.4288 5.2578 -1.9634 51 1 3.7339 5.6368 -0.8483 52 1 4.4427 5.3859 -2.4619 53 1 4.5691 2.9473 -2.0277 54 1 2.8974 3.5384 -1.8722 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173332063.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:26 Heat of formation + Delta-G solvation = -104.486469 kcal Electronic energy + Delta-G solvation = -27942.986322 eV Core-core repulsion = 24297.319955 eV Total energy + Delta-G solvation = -3645.666367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.12073 -40.10457 -38.83363 -36.31856 -34.82949 -33.84431 -33.20449 -31.79615 -31.31798 -30.54261 -28.30708 -26.12053 -25.08419 -23.87893 -23.24463 -22.62835 -21.77434 -21.33003 -20.77749 -20.32377 -18.38951 -18.07066 -17.34159 -16.79882 -16.56187 -16.47797 -16.18258 -15.64899 -15.13247 -14.99530 -14.87389 -14.73830 -14.55599 -14.23423 -14.12555 -13.90706 -13.53555 -13.41280 -13.18864 -13.05404 -12.91332 -12.85045 -12.69012 -12.62959 -12.46886 -12.43395 -12.13014 -12.08315 -12.00957 -11.93365 -11.77963 -11.69438 -11.36780 -11.20150 -11.15965 -10.80147 -10.75904 -10.56027 -10.36574 -10.01152 -9.20424 -8.07025 -6.20898 1.39547 1.40456 1.50515 1.69765 2.25526 2.43191 3.17258 3.20825 3.67556 3.73711 3.87186 3.97725 4.11257 4.17913 4.23747 4.24851 4.26857 4.30464 4.42533 4.45330 4.49339 4.54581 4.59921 4.66649 4.72109 4.77314 4.80581 4.83673 4.92699 4.96713 5.00003 5.07267 5.08046 5.09015 5.14096 5.20126 5.22734 5.25661 5.31792 5.33837 5.36581 5.40292 5.46804 5.47827 5.59419 5.62163 5.69635 6.04971 6.21505 6.23428 6.43075 6.59617 6.62878 6.91679 7.34015 7.46722 8.96261 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.025101 B = 0.002091 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.220913 B =13387.206103 C =13570.218633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.138 4.138 3 C 0.502 3.498 4 O -0.591 6.591 5 N -0.717 5.717 6 C 0.149 3.851 7 H 0.066 0.934 8 C -0.112 4.112 9 C -0.112 4.112 10 C 0.088 3.912 11 H 0.039 0.961 12 N -0.681 5.681 13 C 0.105 3.895 14 C -0.093 4.093 15 C -0.102 4.102 16 C 0.046 3.954 17 C -0.535 4.535 18 H 0.048 0.952 19 C 0.011 3.989 20 N -0.916 5.916 21 Si 0.950 3.050 22 H -0.276 1.276 23 H -0.270 1.270 24 H -0.283 1.283 25 C -0.097 4.097 26 C -0.129 4.129 27 C -0.099 4.099 28 C -0.119 4.119 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.416 0.584 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.344 0.656 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.044 0.956 44 H 0.044 0.956 45 H -0.007 1.007 46 H 0.259 0.741 47 H 0.022 0.978 48 H 0.056 0.944 49 H 0.048 0.952 50 H 0.053 0.947 51 H 0.060 0.940 52 H 0.049 0.951 53 H 0.069 0.931 54 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.840 -17.847 12.614 26.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.177 4.177 3 C 0.290 3.710 4 O -0.472 6.472 5 N -0.368 5.368 6 C 0.044 3.956 7 H 0.084 0.916 8 C -0.150 4.150 9 C -0.150 4.150 10 C -0.022 4.022 11 H 0.057 0.943 12 N -0.311 5.311 13 C -0.005 4.005 14 C -0.131 4.131 15 C -0.140 4.140 16 C 0.027 3.973 17 C -0.573 4.573 18 H 0.067 0.933 19 C -0.187 4.187 20 N -0.555 5.555 21 Si 0.776 3.224 22 H -0.202 1.202 23 H -0.195 1.195 24 H -0.209 1.209 25 C -0.136 4.136 26 C -0.168 4.168 27 C -0.138 4.138 28 C -0.159 4.159 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.253 0.747 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.163 0.837 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.011 0.989 46 H 0.068 0.932 47 H 0.041 0.959 48 H 0.075 0.925 49 H 0.067 0.933 50 H 0.071 0.929 51 H 0.079 0.921 52 H 0.068 0.932 53 H 0.088 0.912 54 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.839 -16.991 12.504 26.993 hybrid contribution 1.883 -0.145 -1.146 2.209 sum -14.956 -17.136 11.358 25.423 Atomic orbital electron populations 1.21539 0.93977 1.02483 1.01668 1.21697 0.97838 0.91569 1.06631 1.21549 0.82195 0.92914 0.74341 1.90700 1.56576 1.48406 1.51493 1.46062 1.07133 1.08910 1.74743 1.20875 0.95951 0.82957 0.95852 0.91611 1.21689 0.94060 0.97103 1.02192 1.21609 1.02304 0.95976 0.95143 1.21543 0.95331 0.88314 0.96974 0.94274 1.60633 1.42729 1.23365 1.04394 1.21380 0.91850 0.95808 0.91464 1.21389 1.00002 0.95141 0.96558 1.21503 0.96689 0.99265 0.96588 1.18622 0.91515 0.92736 0.94387 1.21648 0.96174 1.38160 1.01339 0.93344 1.25728 0.97889 0.95199 0.99875 1.70018 1.08543 1.42392 1.34585 0.85674 0.77573 0.78672 0.80449 1.20171 1.19505 1.20858 1.21323 1.00075 0.98104 0.94103 1.22125 0.96970 0.99431 0.98312 1.21414 0.96127 0.95741 1.00468 1.21819 1.00565 0.96365 0.97121 0.93624 0.93925 0.89730 0.86649 0.86244 0.74676 0.90132 0.89520 0.90461 0.91061 0.83678 0.91777 0.92954 0.91485 0.93740 0.93741 0.98933 0.93163 0.95869 0.92533 0.93287 0.92874 0.92091 0.93200 0.91225 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.20 71.98 0.66 -1.02 16 2 C -0.14 -1.23 6.42 29.85 0.19 -1.04 16 3 C 0.50 8.76 7.79 87.66 0.68 9.44 16 4 O -0.59 -16.50 15.65 -3.04 -0.05 -16.55 16 5 N -0.72 -9.39 5.08 -442.51 -2.25 -11.64 16 6 C 0.15 2.52 2.45 44.99 0.11 2.63 16 7 H 0.07 1.46 7.58 -2.38 -0.02 1.44 16 8 C -0.11 -1.43 5.39 30.59 0.16 -1.27 16 9 C -0.11 -1.84 5.19 30.59 0.16 -1.68 16 10 C 0.09 1.93 2.30 44.92 0.10 2.04 16 11 H 0.04 0.94 7.11 -2.39 -0.02 0.92 16 12 N -0.68 -17.66 6.06 -469.47 -2.84 -20.51 16 13 C 0.10 3.37 2.28 44.91 0.10 3.47 16 14 C -0.09 -3.23 5.53 30.59 0.17 -3.06 16 15 C -0.10 -4.31 5.14 30.59 0.16 -4.15 16 16 C 0.05 2.32 2.10 -11.54 -0.02 2.29 16 17 C -0.54 -30.09 8.56 25.60 0.22 -29.87 16 18 H 0.05 2.70 7.74 -2.91 -0.02 2.67 16 19 C 0.01 0.64 5.30 84.66 0.45 1.09 16 20 N -0.92 -53.23 11.32 21.45 0.24 -52.98 16 21 Si 0.95 44.18 29.54 68.60 2.03 46.21 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 C -0.10 -4.59 4.98 30.58 0.15 -4.44 16 26 C -0.13 -4.74 5.15 30.58 0.16 -4.58 16 27 C -0.10 -2.28 5.41 30.61 0.17 -2.12 16 28 C -0.12 -2.42 5.50 30.61 0.17 -2.25 16 29 H 0.04 0.69 8.10 -2.39 -0.02 0.67 16 30 H 0.04 0.67 8.10 -2.39 -0.02 0.65 16 31 H 0.08 0.59 8.14 -2.38 -0.02 0.58 16 32 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.12 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.42 2.57 8.60 -92.71 -0.80 1.77 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 1.16 8.12 -2.39 -0.02 1.14 16 38 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.34 8.36 8.09 -89.69 -0.73 7.63 16 40 H 0.06 2.16 7.11 -2.38 -0.02 2.15 16 41 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 45 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 46 H 0.26 14.34 8.31 -92.70 -0.77 13.57 16 47 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.06 3.05 6.07 -2.39 -0.01 3.03 16 49 H 0.05 1.84 8.13 -2.38 -0.02 1.82 16 50 H 0.05 1.77 7.42 -2.39 -0.02 1.76 16 51 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 52 H 0.05 1.30 7.43 -2.39 -0.02 1.28 16 53 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 54 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -68.64 407.71 0.26 -68.38 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -0.67 Total: 21.60 kcal Atomic # 6 Polarization: -38.30 SS G_CDS: 3.79 Total: -34.51 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -4.85 Total: -85.13 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.05 Total: -16.55 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -68.64 0.26 -68.38 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332063.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.107 kcal (2) G-P(sol) polarization free energy of solvation -68.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds