Wall clock time and date at job start Tue Mar 31 2020 13:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 O 1.21293 * 120.00002 * 2 1 4 4 N 1.34771 * 120.00516 * 180.02562 * 2 1 3 5 5 C 1.47025 * 125.64897 * 0.02615 * 4 2 1 6 6 C 1.54319 * 107.27377 * 178.89753 * 5 4 2 7 7 C 1.55153 * 102.94305 * 337.80482 * 6 5 4 8 8 H 1.09002 * 111.00737 * 277.43021 * 7 6 5 9 9 N 1.46900 * 111.00593 * 153.58030 * 7 6 5 10 10 C 1.46896 * 111.00001 * 70.44995 * 9 7 6 11 11 C 1.53002 * 109.46853 * 276.28047 * 10 9 7 12 12 C 1.52994 * 109.47203 * 36.28324 * 10 9 7 13 13 C 1.46902 * 110.99720 * 194.40700 * 9 7 6 14 14 C 1.52997 * 109.46997 * 289.15619 * 13 9 7 15 15 C 1.53001 * 109.47531 * 180.02562 * 14 13 9 16 16 C 1.53005 * 109.46682 * 60.00013 * 15 14 13 17 17 C 1.50696 * 109.46847 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99909 * 120.00697 * 17 16 15 19 19 C 1.37874 * 120.00304 * 300.00348 * 17 16 15 20 20 N 1.31512 * 120.00186 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00261 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47352 * 59.99821 * 21 19 17 23 23 H 1.48496 * 109.47620 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47277 * 300.00121 * 21 19 17 25 25 C 1.52998 * 109.47499 * 300.00246 * 16 15 14 26 26 C 1.53001 * 109.46832 * 169.16449 * 13 9 7 27 27 C 1.47432 * 125.65268 * 179.97438 * 4 2 1 28 28 H 1.08995 * 109.47531 * 239.99631 * 1 2 3 29 29 H 1.09001 * 109.47580 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46989 * 119.99968 * 1 2 3 31 31 H 1.09000 * 109.88068 * 59.47429 * 5 4 2 32 32 H 1.09007 * 109.88016 * 298.31302 * 5 4 2 33 33 H 1.08993 * 110.72310 * 96.17155 * 6 5 4 34 34 H 1.08998 * 110.71613 * 219.26476 * 6 5 4 35 35 H 1.09001 * 109.46745 * 156.28300 * 10 9 7 36 36 H 1.08991 * 109.46966 * 65.37164 * 11 10 9 37 37 H 1.09003 * 109.46755 * 185.36984 * 11 10 9 38 38 H 1.08997 * 109.47080 * 305.36875 * 11 10 9 39 39 H 1.08996 * 109.47600 * 51.25867 * 12 10 9 40 40 H 1.09002 * 109.47210 * 171.25856 * 12 10 9 41 41 H 1.09001 * 109.47143 * 291.25450 * 12 10 9 42 42 H 1.09001 * 109.47633 * 49.16167 * 13 9 7 43 43 H 1.09001 * 109.47878 * 300.00542 * 14 13 9 44 44 H 1.09009 * 109.46738 * 60.00821 * 14 13 9 45 45 H 1.09001 * 109.46806 * 300.00983 * 15 14 13 46 46 H 1.08993 * 109.47739 * 180.02562 * 15 14 13 47 47 H 1.09001 * 109.46826 * 60.00368 * 16 15 14 48 48 H 0.96995 * 120.00579 * 180.02562 * 20 19 17 49 49 H 1.08992 * 109.47136 * 300.00153 * 25 16 15 50 50 H 1.08999 * 109.47225 * 179.97438 * 25 16 15 51 51 H 1.09006 * 109.47017 * 299.99599 * 26 13 9 52 52 H 1.09001 * 109.47241 * 59.99479 * 26 13 9 53 53 H 1.08996 * 110.36401 * 85.32846 * 27 4 2 54 54 H 1.09001 * 110.45398 * 323.05846 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.5748 -2.5066 -0.0017 6 6 2.7282 -3.5314 -0.0303 7 6 3.9079 -2.7106 -0.6147 8 1 3.8580 -2.6751 -1.7030 9 7 5.1984 -3.2508 -0.1664 10 6 5.4736 -4.5485 -0.7972 11 6 4.7753 -5.6576 -0.0075 12 6 4.9496 -4.5383 -2.2345 13 6 6.2863 -2.2982 -0.4254 14 6 6.5474 -2.2192 -1.9308 15 6 7.6809 -1.2276 -2.2006 16 6 8.9501 -1.6974 -1.4869 17 6 10.0664 -0.7205 -1.7521 18 1 10.5421 -0.2077 -0.9292 19 6 10.4805 -0.4813 -3.0452 20 7 9.9018 -1.1061 -4.0473 21 14 11.8648 0.7292 -3.3739 22 1 13.0965 0.2727 -2.6814 23 1 12.1187 0.8062 -4.8350 24 1 11.4801 2.0707 -2.8665 25 6 8.6891 -1.7765 0.0186 26 6 7.5557 -2.7675 0.2883 27 6 3.6480 -1.3122 -0.0011 28 1 -0.3634 -0.5139 0.8899 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 0.9480 -2.6291 -0.8850 32 1 0.9786 -2.6445 0.9005 33 1 2.9610 -3.8782 0.9765 34 1 2.4811 -4.3720 -0.6786 35 1 6.5486 -4.7286 -0.8036 36 1 3.6953 -5.5310 -0.0809 37 1 5.0562 -6.6276 -0.4178 38 1 5.0772 -5.6042 1.0384 39 1 5.3275 -3.6571 -2.7528 40 1 5.2879 -5.4366 -2.7510 41 1 3.8599 -4.5141 -2.2238 42 1 6.0033 -1.3134 -0.0535 43 1 6.8304 -3.2039 -2.3028 44 1 5.6430 -1.8848 -2.4393 45 1 7.3983 -0.2428 -1.8286 46 1 7.8666 -1.1710 -3.2731 47 1 9.2326 -2.6823 -1.8589 48 1 10.1933 -0.9382 -4.9570 49 1 8.4065 -0.7917 0.3905 50 1 9.5931 -2.1116 0.5270 51 1 7.3697 -2.8239 1.3609 52 1 7.8386 -3.7523 -0.0836 53 1 4.0341 -1.2669 1.0172 54 1 4.1072 -0.5372 -0.6149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173336838.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:56 Heat of formation + Delta-G solvation = -51.429043 kcal Electronic energy + Delta-G solvation = -29846.024483 eV Core-core repulsion = 26202.658859 eV Total energy + Delta-G solvation = -3643.365624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.69880 -40.44411 -38.49235 -37.05544 -34.66773 -33.04923 -32.29131 -31.53758 -30.60192 -29.98623 -28.29809 -27.97775 -26.20867 -24.38006 -23.36731 -22.59489 -22.14701 -20.84444 -20.21140 -19.55459 -18.42093 -18.04367 -17.65539 -16.98892 -16.62451 -16.37439 -16.04242 -15.61508 -15.19087 -15.00201 -14.74247 -14.50351 -14.33596 -14.10591 -13.98804 -13.93398 -13.64934 -13.35337 -13.24163 -13.10233 -13.02301 -13.02059 -12.91121 -12.76969 -12.63065 -12.47654 -12.34244 -12.18295 -11.94600 -11.88812 -11.75668 -11.65528 -11.37278 -11.27978 -11.02257 -10.89797 -10.78407 -10.52372 -10.37422 -9.69870 -9.15384 -8.08818 -6.22782 1.37970 1.39379 1.46679 1.59142 1.96163 2.41359 2.94150 3.16947 3.39193 3.70163 3.84869 3.88565 4.06878 4.07868 4.14607 4.29524 4.33645 4.37874 4.41350 4.48930 4.51009 4.57947 4.62808 4.64721 4.67044 4.74899 4.77950 4.81083 4.85652 4.86712 4.94071 4.95701 5.01326 5.05575 5.09638 5.10531 5.16909 5.22199 5.25050 5.29283 5.37442 5.40928 5.44112 5.48339 5.57932 5.59490 5.66290 6.02377 6.17533 6.19725 6.29059 6.41379 6.54042 6.89583 7.11924 7.44897 8.94170 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013668 B = 0.003644 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.090660 B = 7682.753937 C = 8921.979803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.509 3.491 3 O -0.611 6.611 4 N -0.619 5.619 5 C 0.098 3.902 6 C -0.113 4.113 7 C 0.069 3.931 8 H 0.058 0.942 9 N -0.508 5.508 10 C 0.072 3.928 11 C -0.137 4.137 12 C -0.197 4.197 13 C 0.094 3.906 14 C -0.130 4.130 15 C -0.099 4.099 16 C 0.051 3.949 17 C -0.538 4.538 18 H 0.048 0.952 19 C 0.013 3.987 20 N -0.915 5.915 21 Si 0.949 3.051 22 H -0.270 1.270 23 H -0.283 1.283 24 H -0.275 1.275 25 C -0.102 4.102 26 C -0.093 4.093 27 C 0.111 3.889 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.044 0.956 45 H 0.014 0.986 46 H 0.054 0.946 47 H -0.006 1.006 48 H 0.259 0.741 49 H 0.041 0.959 50 H 0.048 0.952 51 H 0.073 0.927 52 H 0.058 0.942 53 H 0.067 0.933 54 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.226 -10.985 8.460 26.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.301 3.699 3 O -0.493 6.493 4 N -0.352 5.352 5 C -0.024 4.024 6 C -0.151 4.151 7 C -0.040 4.040 8 H 0.076 0.924 9 N -0.230 5.230 10 C -0.036 4.036 11 C -0.194 4.194 12 C -0.255 4.255 13 C -0.014 4.014 14 C -0.169 4.169 15 C -0.138 4.138 16 C 0.032 3.968 17 C -0.576 4.576 18 H 0.067 0.933 19 C -0.186 4.186 20 N -0.555 5.555 21 Si 0.775 3.225 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.201 1.201 25 C -0.141 4.141 26 C -0.130 4.130 27 C -0.013 4.013 28 H 0.134 0.866 29 H 0.106 0.894 30 H 0.130 0.870 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.033 0.967 46 H 0.072 0.928 47 H 0.013 0.987 48 H 0.068 0.932 49 H 0.059 0.941 50 H 0.067 0.933 51 H 0.092 0.908 52 H 0.076 0.924 53 H 0.085 0.915 54 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -22.006 -10.485 8.801 25.916 hybrid contribution 1.624 1.362 -1.617 2.666 sum -20.382 -9.122 7.184 23.458 Atomic orbital electron populations 1.21894 0.87005 1.06013 1.06557 1.21553 0.92442 0.81326 0.74562 1.90728 1.72463 1.33029 1.53092 1.48646 1.06865 1.07324 1.72404 1.22415 0.96591 0.79192 1.04175 1.22907 0.91467 0.97189 1.03548 1.22765 0.90760 0.92807 0.97660 0.92394 1.62529 1.00425 1.02859 1.57224 1.21759 1.00153 0.89453 0.92274 1.21947 1.01555 0.96024 0.99923 1.22875 1.02362 1.02611 0.97641 1.21612 0.91380 0.95358 0.93089 1.22343 0.97272 0.99708 0.97544 1.21372 0.94964 0.95672 1.01787 1.18567 0.92477 0.94307 0.91414 1.21638 1.18437 1.25171 0.92341 0.93349 1.25711 0.98865 0.97721 0.96256 1.70004 1.42716 1.43653 0.99108 0.85755 0.80138 0.79679 0.76961 1.19509 1.20848 1.20051 1.21489 0.97238 0.98059 0.97270 1.21450 0.93143 0.98316 1.00118 1.22106 0.81480 0.97050 1.00659 0.86612 0.89414 0.86974 0.89011 0.88360 0.88682 0.87629 0.91624 0.90363 0.92030 0.92274 0.92857 0.91996 0.90682 0.91693 0.91838 0.93783 0.96695 0.92767 0.98742 0.93196 0.94063 0.93331 0.90788 0.92373 0.91464 0.94220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.51 71.23 0.68 -1.23 16 2 C 0.51 12.64 7.96 87.65 0.70 13.33 16 3 O -0.61 -22.71 17.34 -3.07 -0.05 -22.76 16 4 N -0.62 -13.33 3.33 -811.78 -2.70 -16.03 16 5 C 0.10 1.09 6.49 86.73 0.56 1.66 16 6 C -0.11 -1.45 4.39 31.78 0.14 -1.31 16 7 C 0.07 1.52 1.60 46.31 0.07 1.59 16 8 H 0.06 1.41 5.10 -2.39 -0.01 1.40 16 9 N -0.51 -12.57 4.30 -812.99 -3.49 -16.06 16 10 C 0.07 1.61 2.22 44.91 0.10 1.71 16 11 C -0.14 -2.19 8.83 71.98 0.64 -1.55 16 12 C -0.20 -4.35 7.21 71.98 0.52 -3.83 16 13 C 0.09 3.08 1.99 44.91 0.09 3.17 16 14 C -0.13 -4.97 3.37 30.59 0.10 -4.87 16 15 C -0.10 -4.89 4.98 30.60 0.15 -4.74 16 16 C 0.05 2.61 2.10 -11.54 -0.02 2.58 16 17 C -0.54 -30.83 8.56 25.60 0.22 -30.61 16 18 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 19 C 0.01 0.74 5.30 84.65 0.45 1.19 16 20 N -0.92 -54.31 11.32 21.45 0.24 -54.07 16 21 Si 0.95 45.24 29.54 68.60 2.03 47.26 16 22 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 25 C -0.10 -4.34 5.14 30.58 0.16 -4.18 16 26 C -0.09 -3.15 5.19 30.58 0.16 -2.99 16 27 C 0.11 2.99 4.95 86.85 0.43 3.42 16 28 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.09 1.18 8.12 -2.39 -0.02 1.16 16 30 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.64 16 32 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.09 1.19 7.73 -2.39 -0.02 1.17 16 34 H 0.11 0.92 5.94 -2.39 -0.01 0.91 16 35 H 0.07 1.79 5.52 -2.39 -0.01 1.77 16 36 H 0.08 0.93 4.83 -2.39 -0.01 0.92 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.05 1.49 3.93 -2.39 -0.01 1.48 16 40 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.07 1.31 5.83 -2.39 -0.01 1.30 16 42 H 0.06 2.32 6.33 -2.39 -0.02 2.31 16 43 H 0.06 2.45 5.45 -2.39 -0.01 2.44 16 44 H 0.04 1.63 6.31 -2.38 -0.02 1.61 16 45 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.05 3.05 6.07 -2.39 -0.01 3.03 16 47 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 48 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 49 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 51 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 52 H 0.06 1.96 6.28 -2.39 -0.01 1.95 16 53 H 0.07 1.92 8.07 -2.39 -0.02 1.90 16 54 H 0.04 1.36 7.70 -2.39 -0.02 1.34 16 Total: -1.00 -73.17 383.92 2.03 -71.14 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.87 Total: 17.18 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: 5.14 Total: -26.66 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -5.95 Total: -86.16 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.05 Total: -22.76 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -73.17 2.03 -71.14 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173336838.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.712 kcal (2) G-P(sol) polarization free energy of solvation -73.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds