Wall clock time and date at job start Tue Mar 31 2020 13:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21280 * 119.99615 * 2 1 4 4 N 1.34774 * 119.99793 * 179.97438 * 2 1 3 5 5 C 1.47017 * 125.64920 * 359.97438 * 4 2 1 6 6 C 1.54322 * 107.40115 * 181.01349 * 5 4 2 7 7 C 1.55552 * 102.76308 * 22.23881 * 6 5 4 8 8 H 1.09005 * 111.06319 * 82.57109 * 7 6 5 9 9 N 1.46899 * 110.97139 * 206.40191 * 7 6 5 10 10 C 1.46894 * 111.00209 * 182.05019 * 9 7 6 11 11 C 1.53006 * 109.47293 * 274.94312 * 10 9 7 12 12 C 1.52997 * 109.47334 * 34.94266 * 10 9 7 13 13 C 1.46903 * 110.99667 * 306.00520 * 9 7 6 14 14 C 1.52999 * 109.46995 * 288.53589 * 13 9 7 15 15 C 1.52999 * 109.47011 * 179.97438 * 14 13 9 16 16 C 1.53002 * 109.46902 * 60.00174 * 15 14 13 17 17 C 1.50704 * 109.46953 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00157 * 120.00228 * 17 16 15 19 19 C 1.37876 * 119.99852 * 299.99597 * 17 16 15 20 20 N 1.31514 * 120.00334 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99822 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47252 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46940 * 120.00615 * 21 19 17 24 24 H 1.48499 * 109.47109 * 240.00518 * 21 19 17 25 25 C 1.52999 * 109.47145 * 299.99744 * 16 15 14 26 26 C 1.52999 * 109.47011 * 60.00323 * 25 16 15 27 27 C 1.47427 * 125.64362 * 180.02562 * 4 2 1 28 28 H 1.08998 * 109.47311 * 240.00337 * 1 2 3 29 29 H 1.09007 * 109.47303 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47512 * 120.00122 * 1 2 3 31 31 H 1.09003 * 109.87756 * 300.50452 * 5 4 2 32 32 H 1.08996 * 109.88406 * 61.51884 * 5 4 2 33 33 H 1.09004 * 110.72322 * 140.62721 * 6 5 4 34 34 H 1.08996 * 110.72275 * 263.90318 * 6 5 4 35 35 H 1.09002 * 109.47084 * 154.94449 * 10 9 7 36 36 H 1.09001 * 109.46797 * 66.83952 * 11 10 9 37 37 H 1.08998 * 109.47405 * 186.83901 * 11 10 9 38 38 H 1.09000 * 109.47124 * 306.84561 * 11 10 9 39 39 H 1.09003 * 109.46886 * 51.99991 * 12 10 9 40 40 H 1.08997 * 109.47637 * 171.99782 * 12 10 9 41 41 H 1.08996 * 109.47491 * 292.00444 * 12 10 9 42 42 H 1.09000 * 109.47220 * 48.54087 * 13 9 7 43 43 H 1.09000 * 109.47020 * 300.00321 * 14 13 9 44 44 H 1.09002 * 109.46878 * 60.00249 * 14 13 9 45 45 H 1.09000 * 109.47236 * 300.00518 * 15 14 13 46 46 H 1.08994 * 109.47368 * 179.97438 * 15 14 13 47 47 H 1.09000 * 109.46894 * 60.00134 * 16 15 14 48 48 H 0.97002 * 120.00333 * 179.97438 * 20 19 17 49 49 H 1.09000 * 109.47543 * 299.99993 * 25 16 15 50 50 H 1.09002 * 109.46878 * 180.02562 * 25 16 15 51 51 H 1.09003 * 109.47496 * 179.97438 * 26 25 16 52 52 H 1.09000 * 109.47236 * 59.99482 * 26 25 16 53 53 H 1.09002 * 110.36652 * 274.67497 * 27 4 2 54 54 H 1.09000 * 110.36642 * 37.00144 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.5746 -2.5066 0.0017 6 6 2.7257 -3.5341 0.0279 7 6 3.9080 -2.7108 0.6142 8 1 3.8590 -2.6752 1.7026 9 7 5.1983 -3.2509 0.1655 10 6 6.3162 -2.5040 0.7575 11 6 6.6127 -1.2688 -0.0953 12 6 5.9436 -2.0672 2.1756 13 6 5.3033 -4.6843 0.4694 14 6 5.4689 -4.8749 1.9784 15 6 5.5775 -6.3679 2.2950 16 6 6.7901 -6.9558 1.5705 17 6 6.8975 -8.4262 1.8828 18 1 6.8520 -9.1525 1.0848 19 6 7.0539 -8.8443 3.1874 20 7 7.1089 -7.9599 4.1592 21 14 7.1877 -10.6668 3.5744 22 1 7.0983 -11.4483 2.3148 23 1 8.4903 -10.9385 4.2335 24 1 6.0814 -11.0626 4.4824 25 6 6.6245 -6.7652 0.0615 26 6 6.5159 -5.2723 -0.2550 27 6 3.6480 -1.3122 0.0011 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3634 -0.5138 -0.8899 31 1 0.9481 -2.6291 0.8852 32 1 0.9761 -2.6433 -0.8990 33 1 2.4784 -4.3738 0.6776 34 1 2.9572 -3.8798 -0.9795 35 1 7.1999 -3.1411 0.7939 36 1 5.7745 -0.5747 -0.0332 37 1 7.5158 -0.7816 0.2724 38 1 6.7589 -1.5699 -1.1326 39 1 5.5959 -2.9310 2.7423 40 1 6.8181 -1.6393 2.6657 41 1 5.1512 -1.3202 2.1294 42 1 4.3991 -5.1936 0.1358 43 1 6.3730 -4.3656 2.3119 44 1 4.6047 -4.4564 2.4945 45 1 4.6731 -6.8767 1.9615 46 1 5.6959 -6.5037 3.3699 47 1 7.6945 -6.4469 1.9040 48 1 7.2186 -8.2541 5.0770 49 1 5.7201 -7.2741 -0.2720 50 1 7.4882 -7.1845 -0.4546 51 1 6.3983 -5.1364 -1.3301 52 1 7.4202 -4.7634 0.0785 53 1 4.0341 -1.2669 -1.0172 54 1 4.1055 -0.5373 0.6161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173336839.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:00 Heat of formation + Delta-G solvation = -52.280618 kcal Electronic energy + Delta-G solvation = -29738.309169 eV Core-core repulsion = 26094.906618 eV Total energy + Delta-G solvation = -3643.402551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.67832 -40.41765 -38.42475 -37.05409 -34.63170 -33.26248 -32.03655 -31.45889 -30.55067 -29.96999 -28.38436 -28.17391 -26.03706 -24.40185 -23.20347 -22.53923 -22.23730 -20.77200 -20.42363 -19.41966 -18.37380 -18.06974 -17.63479 -16.74635 -16.53551 -16.38715 -16.11285 -15.66279 -15.14437 -14.93091 -14.72554 -14.67447 -14.40503 -14.20615 -13.98529 -13.81460 -13.63102 -13.31264 -13.24954 -13.06255 -13.00663 -12.97774 -12.90079 -12.80535 -12.57919 -12.41106 -12.26015 -12.16150 -11.96662 -11.84668 -11.81979 -11.64459 -11.40367 -11.33778 -11.04089 -10.86133 -10.73704 -10.46998 -10.33422 -9.67853 -9.14921 -8.05053 -6.18703 1.39202 1.42138 1.52497 1.60568 1.97485 2.44507 2.94316 3.21144 3.39842 3.68627 3.87324 3.90174 4.06830 4.12422 4.12999 4.26119 4.30328 4.34732 4.43372 4.50133 4.52229 4.61318 4.63150 4.65669 4.66913 4.74876 4.78567 4.83749 4.86576 4.87236 4.91152 4.95388 5.01671 5.03040 5.08079 5.12448 5.15228 5.21002 5.27167 5.28167 5.36611 5.43836 5.44231 5.45978 5.52394 5.64985 5.72384 6.08344 6.21181 6.26667 6.28586 6.45962 6.53943 6.95134 7.12198 7.49348 8.97978 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.020856 B = 0.003052 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.246057 B = 9171.650861 C = 9654.957265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.514 3.486 3 O -0.605 6.605 4 N -0.620 5.620 5 C 0.103 3.897 6 C -0.126 4.126 7 C 0.067 3.933 8 H 0.058 0.942 9 N -0.511 5.511 10 C 0.072 3.928 11 C -0.139 4.139 12 C -0.192 4.192 13 C 0.100 3.900 14 C -0.133 4.133 15 C -0.097 4.097 16 C 0.047 3.953 17 C -0.530 4.530 18 H 0.050 0.950 19 C 0.012 3.988 20 N -0.916 5.916 21 Si 0.947 3.053 22 H -0.267 1.267 23 H -0.284 1.284 24 H -0.281 1.281 25 C -0.100 4.100 26 C -0.096 4.096 27 C 0.120 3.880 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.089 0.911 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.029 0.971 46 H 0.051 0.949 47 H -0.014 1.014 48 H 0.258 0.742 49 H 0.051 0.949 50 H 0.042 0.958 51 H 0.074 0.926 52 H 0.048 0.952 53 H 0.073 0.927 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.819 12.356 -9.038 19.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.306 3.694 3 O -0.487 6.487 4 N -0.354 5.354 5 C -0.019 4.019 6 C -0.164 4.164 7 C -0.042 4.042 8 H 0.076 0.924 9 N -0.233 5.233 10 C -0.036 4.036 11 C -0.197 4.197 12 C -0.250 4.250 13 C -0.008 4.008 14 C -0.172 4.172 15 C -0.136 4.136 16 C 0.029 3.971 17 C -0.569 4.569 18 H 0.068 0.932 19 C -0.186 4.186 20 N -0.556 5.556 21 Si 0.774 3.226 22 H -0.192 1.192 23 H -0.210 1.210 24 H -0.207 1.207 25 C -0.138 4.138 26 C -0.133 4.133 27 C -0.003 4.003 28 H 0.127 0.873 29 H 0.109 0.891 30 H 0.130 0.870 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.107 0.893 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.048 0.952 46 H 0.070 0.930 47 H 0.005 0.995 48 H 0.067 0.933 49 H 0.070 0.930 50 H 0.061 0.939 51 H 0.092 0.908 52 H 0.066 0.934 53 H 0.091 0.909 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.522 13.038 -9.391 20.372 hybrid contribution 0.666 -1.182 1.733 2.201 sum -11.857 11.856 -7.658 18.434 Atomic orbital electron populations 1.21911 0.87658 1.06019 1.06302 1.21366 0.92173 0.81282 0.74557 1.90697 1.72296 1.32570 1.53098 1.48695 1.07438 1.06895 1.72398 1.22241 0.96149 0.79543 1.03960 1.22849 0.92861 0.97498 1.03174 1.22836 0.89939 0.93735 0.97697 0.92397 1.62427 1.00975 1.02177 1.57742 1.21711 0.94150 0.95589 0.92194 1.21929 1.01370 0.96219 1.00133 1.22822 1.02075 1.02047 0.98094 1.21635 0.99315 0.87208 0.92678 1.22345 0.99992 0.97232 0.97607 1.21342 0.97507 0.93061 1.01644 1.18607 0.93180 0.93728 0.91602 1.21684 1.48931 0.93810 0.92440 0.93190 1.25699 0.95199 1.01147 0.96570 1.70031 1.51303 1.34491 0.99819 0.85668 0.77446 0.81329 0.78188 1.19156 1.21036 1.20682 1.21472 1.00071 0.95289 0.96949 1.21479 0.97008 0.94783 1.00071 1.22275 0.80664 0.96293 1.01041 0.87348 0.89145 0.87015 0.89413 0.88585 0.89304 0.89126 0.90989 0.92569 0.92016 0.91854 0.91820 0.92236 0.92336 0.89281 0.93073 0.92978 0.95210 0.93008 0.99536 0.93329 0.92982 0.93869 0.90755 0.93368 0.90921 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.51 71.24 0.68 -1.11 16 2 C 0.51 11.26 7.96 87.66 0.70 11.96 16 3 O -0.60 -19.37 17.34 -3.03 -0.05 -19.42 16 4 N -0.62 -12.16 3.33 -811.82 -2.70 -14.86 16 5 C 0.10 1.34 6.47 86.73 0.56 1.90 16 6 C -0.13 -2.12 5.00 31.92 0.16 -1.96 16 7 C 0.07 1.46 1.63 46.44 0.08 1.54 16 8 H 0.06 1.41 5.11 -2.38 -0.01 1.40 16 9 N -0.51 -12.53 4.29 -812.18 -3.48 -16.01 16 10 C 0.07 1.82 2.20 44.92 0.10 1.92 16 11 C -0.14 -3.09 8.85 71.98 0.64 -2.45 16 12 C -0.19 -4.93 7.22 71.98 0.52 -4.41 16 13 C 0.10 2.88 1.99 44.92 0.09 2.96 16 14 C -0.13 -4.63 3.39 30.59 0.10 -4.52 16 15 C -0.10 -4.34 4.98 30.59 0.15 -4.18 16 16 C 0.05 2.28 2.10 -11.54 -0.02 2.26 16 17 C -0.53 -28.79 8.56 25.60 0.22 -28.57 16 18 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 19 C 0.01 0.66 5.30 84.65 0.45 1.11 16 20 N -0.92 -52.56 11.32 21.45 0.24 -52.32 16 21 Si 0.95 43.32 29.54 68.60 2.03 45.35 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 C -0.10 -3.88 5.14 30.59 0.16 -3.72 16 26 C -0.10 -3.02 5.21 30.59 0.16 -2.86 16 27 C 0.12 2.71 4.40 86.85 0.38 3.09 16 28 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.09 1.05 8.12 -2.38 -0.02 1.03 16 30 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 1.48 7.89 -2.39 -0.02 1.46 16 34 H 0.09 1.53 8.08 -2.39 -0.02 1.51 16 35 H 0.07 2.08 5.47 -2.39 -0.01 2.07 16 36 H 0.06 1.26 4.93 -2.39 -0.01 1.25 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.06 1.83 4.06 -2.39 -0.01 1.82 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.06 1.43 5.61 -2.39 -0.01 1.42 16 42 H 0.09 2.46 6.38 -2.39 -0.02 2.44 16 43 H 0.05 1.91 5.50 -2.39 -0.01 1.90 16 44 H 0.05 1.68 6.28 -2.39 -0.01 1.67 16 45 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.05 2.72 6.07 -2.39 -0.01 2.70 16 47 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 48 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 49 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 50 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 51 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 52 H 0.05 1.60 6.33 -2.39 -0.02 1.58 16 53 H 0.07 1.73 7.76 -2.39 -0.02 1.71 16 54 H 0.06 1.57 5.59 -2.39 -0.01 1.56 16 Total: -1.00 -66.61 383.95 2.02 -64.59 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.87 Total: 19.72 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 5.12 Total: -27.04 kcal Atomic # 7 Polarization: -77.25 SS G_CDS: -5.94 Total: -83.19 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.05 Total: -19.42 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -66.61 2.02 -64.59 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173336839.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.306 kcal (2) G-P(sol) polarization free energy of solvation -66.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds