Wall clock time and date at job start Tue Mar 31 2020 13:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.47098 * 2 1 4 4 N 1.46495 * 109.47235 * 179.97438 * 3 2 1 5 5 C 1.34774 * 120.00288 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99977 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.00138 * 179.97438 * 5 4 3 8 8 H 1.09004 * 109.45198 * 30.84876 * 7 5 4 9 9 C 1.53040 * 109.46631 * 270.87217 * 7 5 4 10 10 C 1.53114 * 109.27821 * 180.80516 * 9 7 5 11 11 C 1.53119 * 109.16464 * 57.65481 * 10 9 7 12 12 C 1.53037 * 109.27545 * 302.34607 * 11 10 9 13 13 N 1.46846 * 109.52514 * 59.17907 * 12 11 10 14 14 C 1.46900 * 110.99983 * 174.15932 * 13 12 11 15 15 C 1.53002 * 109.47219 * 55.00823 * 14 13 12 16 16 C 1.52995 * 109.47028 * 179.97438 * 15 14 13 17 17 C 1.52998 * 109.47254 * 60.00416 * 16 15 14 18 18 C 1.50697 * 109.47707 * 59.99427 * 17 16 15 19 19 H 1.08003 * 119.99407 * 0.02562 * 18 17 16 20 20 C 1.37868 * 120.00336 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00084 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00120 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47266 * 270.00011 * 22 20 18 24 24 H 1.48495 * 109.47033 * 30.00616 * 22 20 18 25 25 H 1.48502 * 109.46888 * 150.00174 * 22 20 18 26 26 C 1.53007 * 109.46584 * 299.99455 * 17 16 15 27 27 C 1.52995 * 109.47328 * 295.00795 * 14 13 12 28 28 H 1.09001 * 109.46714 * 300.00009 * 1 2 3 29 29 H 1.08998 * 109.46984 * 59.99634 * 1 2 3 30 30 H 1.08992 * 109.47031 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46975 * 239.99907 * 2 1 3 32 32 H 1.09004 * 109.46967 * 119.99938 * 2 1 3 33 33 H 1.09006 * 109.47075 * 59.99984 * 3 2 1 34 34 H 1.09000 * 109.47290 * 300.00550 * 3 2 1 35 35 H 0.97009 * 119.99736 * 0.02562 * 4 3 2 36 36 H 1.08996 * 109.49923 * 300.74525 * 9 7 5 37 37 H 1.09003 * 109.50047 * 60.86291 * 9 7 5 38 38 H 1.09005 * 109.52092 * 177.56407 * 10 9 7 39 39 H 1.09009 * 109.52416 * 297.74666 * 10 9 7 40 40 H 1.08998 * 109.49970 * 62.28461 * 11 10 9 41 41 H 1.09001 * 109.50607 * 182.36618 * 11 10 9 42 42 H 1.09001 * 109.46005 * 299.15831 * 12 11 10 43 43 H 1.09002 * 109.46269 * 179.19155 * 12 11 10 44 44 H 1.08995 * 109.46982 * 175.00532 * 14 13 12 45 45 H 1.08999 * 109.47259 * 59.99779 * 15 14 13 46 46 H 1.09005 * 109.47270 * 300.00199 * 15 14 13 47 47 H 1.08995 * 109.47124 * 299.99678 * 16 15 14 48 48 H 1.09006 * 109.46780 * 179.97438 * 16 15 14 49 49 H 1.09002 * 109.47109 * 180.02562 * 17 16 15 50 50 H 0.97001 * 120.00341 * 179.97438 * 21 20 18 51 51 H 1.09002 * 109.46756 * 179.97438 * 26 17 16 52 52 H 1.08995 * 109.47233 * 300.00394 * 26 17 16 53 53 H 1.09006 * 109.47063 * 299.99905 * 27 14 13 54 54 H 1.09007 * 109.47262 * 59.99477 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1789 2.6097 0.0002 6 8 3.5726 3.6600 -0.0002 7 6 5.6859 2.6097 0.0014 8 1 6.0493 1.7269 -0.5246 9 6 6.1947 2.5889 1.4446 10 6 7.7257 2.6093 1.4412 11 6 8.2102 3.8523 0.6897 12 6 7.6430 3.8365 -0.7316 13 7 6.1757 3.8180 -0.6743 14 6 5.5948 3.9420 -2.0178 15 6 6.1632 2.8467 -2.9223 16 6 5.5576 2.9755 -4.3214 17 6 5.9041 4.3477 -4.9028 18 6 7.4015 4.4937 -4.9881 19 1 8.0421 3.6881 -4.6608 20 6 7.9537 5.6556 -5.4840 21 7 7.1737 6.6368 -5.8821 22 14 9.8100 5.8368 -5.5891 23 1 10.3222 6.4261 -4.3260 24 1 10.4266 4.5022 -5.7984 25 1 10.1569 6.7262 -6.7266 26 6 5.3356 5.4430 -3.9982 27 6 5.9417 5.3142 -2.5988 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.9901 0.6024 0.0006 36 1 5.8203 3.4644 1.9750 37 1 5.8439 1.6842 1.9411 38 1 8.0919 2.6383 2.4674 39 1 8.1009 1.7142 0.9448 40 1 7.8675 4.7477 1.2083 41 1 9.2994 3.8506 0.6474 42 1 7.9973 2.9479 -1.2541 43 1 7.9743 4.7275 -1.2649 44 1 4.5117 3.8367 -1.9564 45 1 5.9161 1.8691 -2.5085 46 1 7.2464 2.9520 -2.9837 47 1 4.4746 2.8699 -4.2597 48 1 5.9630 2.1955 -4.9660 49 1 5.4722 4.4396 -5.8994 50 1 7.5622 7.4544 -6.2306 51 1 5.5828 6.4206 -4.4121 52 1 4.2525 5.3374 -3.9365 53 1 5.5367 6.0946 -1.9544 54 1 7.0249 5.4196 -2.6601 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173339755.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:17 Heat of formation + Delta-G solvation = -80.533033 kcal Electronic energy + Delta-G solvation = -29967.571114 eV Core-core repulsion = 26322.943447 eV Total energy + Delta-G solvation = -3644.627668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.72682 -39.84024 -38.25384 -36.70457 -35.02364 -33.66181 -33.40893 -32.04045 -31.32767 -29.72637 -27.51849 -26.74919 -25.10170 -24.65555 -23.33075 -22.56387 -22.06586 -21.45093 -20.66029 -19.90829 -18.11935 -17.73543 -17.39363 -16.90047 -16.62505 -16.51411 -15.90769 -15.49554 -15.46809 -15.14548 -14.95965 -14.95134 -14.56999 -14.28960 -14.12703 -13.85632 -13.69956 -13.34661 -13.27524 -13.17967 -12.98371 -12.91691 -12.84081 -12.66382 -12.39196 -12.37547 -12.11051 -12.02926 -11.89938 -11.75082 -11.72645 -11.58660 -11.44396 -11.29230 -10.92315 -10.70656 -10.59563 -10.52714 -10.28736 -10.07317 -9.05356 -8.01668 -6.12591 1.41409 1.42780 1.51280 1.63542 2.13454 2.46224 2.97487 3.26542 3.71501 3.85919 3.92280 3.96332 4.06891 4.07987 4.13769 4.15193 4.29979 4.34440 4.36937 4.38826 4.57398 4.63213 4.66795 4.71758 4.76310 4.80060 4.86398 4.88137 4.90002 4.93862 4.96576 5.00390 5.02864 5.11511 5.14791 5.16735 5.22359 5.25168 5.29508 5.34991 5.39681 5.43798 5.50832 5.51990 5.63617 5.67776 5.72194 5.89534 6.14171 6.23068 6.25356 6.45289 6.62008 6.96648 7.31364 7.53322 9.03611 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013705 B = 0.004104 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.620422 B = 6821.579571 C = 8170.980488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.117 3.883 4 N -0.720 5.720 5 C 0.515 3.485 6 O -0.567 6.567 7 C 0.069 3.931 8 H 0.075 0.925 9 C -0.099 4.099 10 C -0.110 4.110 11 C -0.116 4.116 12 C 0.052 3.948 13 N -0.523 5.523 14 C 0.102 3.898 15 C -0.125 4.125 16 C -0.096 4.096 17 C 0.041 3.959 18 C -0.502 4.502 19 H 0.056 0.944 20 C 0.013 3.987 21 N -0.921 5.921 22 Si 0.942 3.058 23 H -0.276 1.276 24 H -0.266 1.266 25 H -0.290 1.290 26 C -0.101 4.101 27 C -0.075 4.075 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.415 0.585 36 H 0.057 0.943 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.041 0.959 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.037 0.963 48 H 0.050 0.950 49 H -0.013 1.013 50 H 0.256 0.744 51 H 0.059 0.941 52 H 0.012 0.988 53 H 0.029 0.971 54 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.350 -16.674 17.188 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.006 4.006 4 N -0.374 5.374 5 C 0.301 3.699 6 O -0.444 6.444 7 C -0.043 4.043 8 H 0.093 0.907 9 C -0.137 4.137 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.075 4.075 13 N -0.247 5.247 14 C -0.006 4.006 15 C -0.164 4.164 16 C -0.134 4.134 17 C 0.023 3.977 18 C -0.540 4.540 19 H 0.074 0.926 20 C -0.185 4.185 21 N -0.561 5.561 22 Si 0.769 3.231 23 H -0.202 1.202 24 H -0.190 1.190 25 H -0.216 1.216 26 C -0.139 4.139 27 C -0.113 4.113 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.251 0.749 36 H 0.076 0.924 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.056 0.944 48 H 0.069 0.931 49 H 0.005 0.995 50 H 0.066 0.934 51 H 0.077 0.923 52 H 0.031 0.969 53 H 0.048 0.952 54 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.939 -15.351 17.408 23.730 hybrid contribution 1.032 0.001 -1.302 1.661 sum -3.908 -15.349 16.106 22.589 Atomic orbital electron populations 1.21699 0.94274 1.02848 1.02053 1.21679 0.97139 0.93617 1.03777 1.21425 0.79230 0.98968 1.01002 1.45957 1.07610 1.08522 1.75265 1.20852 0.90429 0.83623 0.74977 1.90700 1.70908 1.33081 1.49728 1.21711 0.90363 0.93581 0.98642 0.90740 1.21540 0.97074 1.03106 0.91972 1.21547 0.93786 0.97828 1.01564 1.21626 1.00439 0.99280 0.94013 1.22180 0.86280 1.00886 0.98190 1.61939 1.07703 1.36810 1.18241 1.21515 0.97699 0.95184 0.86195 1.21966 1.01271 0.97611 0.95512 1.21378 0.97810 0.98059 0.96200 1.18655 0.95176 0.91247 0.92622 1.21321 0.92058 1.00321 1.40285 0.92557 1.25660 1.01362 0.95983 0.95491 1.70031 1.35854 1.06130 1.44101 0.85790 0.81755 0.78101 0.77487 1.20223 1.18989 1.21618 1.21370 0.94866 1.02313 0.95374 1.21165 1.00346 0.95099 0.94657 0.92368 0.93116 0.90818 0.90650 0.89638 0.92443 0.93759 0.74854 0.92381 0.88594 0.89453 0.90707 0.92234 0.90114 0.94075 0.92264 0.92184 0.92200 0.91701 0.94382 0.93143 0.99496 0.93436 0.92287 0.96923 0.95240 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 71.99 0.71 -1.00 16 2 C -0.12 -1.47 6.05 30.60 0.19 -1.28 16 3 C 0.12 2.28 5.67 86.38 0.49 2.77 16 4 N -0.72 -14.47 5.56 -463.07 -2.57 -17.05 16 5 C 0.51 14.78 5.79 87.66 0.51 15.29 16 6 O -0.57 -22.14 15.29 -3.02 -0.05 -22.19 16 7 C 0.07 1.76 1.89 44.19 0.08 1.84 16 8 H 0.08 1.65 6.85 -2.39 -0.02 1.63 16 9 C -0.10 -1.95 5.36 30.65 0.16 -1.79 16 10 C -0.11 -1.88 6.00 30.67 0.18 -1.70 16 11 C -0.12 -2.66 6.09 30.65 0.19 -2.48 16 12 C 0.05 1.59 4.56 86.33 0.39 1.98 16 13 N -0.52 -17.39 4.21 -850.39 -3.58 -20.97 16 14 C 0.10 4.01 1.83 44.91 0.08 4.09 16 15 C -0.12 -4.63 4.24 30.59 0.13 -4.50 16 16 C -0.10 -4.07 5.41 30.59 0.17 -3.90 16 17 C 0.04 2.14 2.59 -11.54 -0.03 2.11 16 18 C -0.50 -27.03 6.61 25.60 0.17 -26.86 16 19 H 0.06 2.95 6.71 -2.91 -0.02 2.93 16 20 C 0.01 0.71 5.30 84.65 0.45 1.16 16 21 N -0.92 -54.40 11.32 21.44 0.24 -54.16 16 22 Si 0.94 43.69 29.54 68.60 2.03 45.72 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 26 C -0.10 -5.18 5.24 30.61 0.16 -5.02 16 27 C -0.07 -3.48 4.90 30.61 0.15 -3.33 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.04 1.07 8.14 -2.39 -0.02 1.06 16 35 H 0.41 5.38 8.47 -92.70 -0.79 4.59 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.04 1.21 6.58 -2.39 -0.02 1.20 16 43 H 0.06 2.15 6.18 -2.39 -0.01 2.14 16 44 H 0.06 2.59 5.76 -2.39 -0.01 2.58 16 45 H 0.06 1.85 6.78 -2.39 -0.02 1.84 16 46 H 0.06 2.57 4.95 -2.38 -0.01 2.55 16 47 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 49 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 50 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 51 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 52 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 53 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 54 H 0.05 2.69 5.48 -2.38 -0.01 2.68 16 Total: -1.00 -69.54 393.37 0.33 -69.21 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.08 Total: 22.03 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 4.18 Total: -22.60 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -5.91 Total: -92.18 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.05 Total: -22.19 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -69.54 0.33 -69.21 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339755.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.322 kcal (2) G-P(sol) polarization free energy of solvation -69.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds