Wall clock time and date at job start Tue Mar 31 2020 13:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53009 * 109.46813 * 2 1 4 4 N 1.46495 * 109.46618 * 180.02562 * 3 2 1 5 5 C 1.34781 * 119.99716 * 179.97438 * 4 3 2 6 6 O 1.21270 * 120.00153 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.99931 * 179.97438 * 5 4 3 8 8 H 1.09007 * 109.45162 * 329.30704 * 7 5 4 9 9 C 1.53037 * 109.46148 * 89.27643 * 7 5 4 10 10 C 1.53120 * 109.30849 * 179.17414 * 9 7 5 11 11 C 1.53122 * 109.16106 * 302.40717 * 10 9 7 12 12 C 1.53041 * 109.30922 * 57.59729 * 11 10 9 13 13 N 1.46838 * 109.46036 * 209.33325 * 7 5 4 14 14 C 1.46903 * 111.00530 * 54.14307 * 13 7 5 15 15 C 1.53000 * 109.47360 * 190.51400 * 14 13 7 16 16 C 1.53003 * 109.46855 * 180.02562 * 15 14 13 17 17 C 1.52995 * 109.47380 * 60.00210 * 16 15 14 18 18 C 1.50698 * 109.47278 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99692 * 119.99610 * 18 17 16 20 20 C 1.37878 * 120.00033 * 299.99949 * 18 17 16 21 21 N 1.31512 * 119.99750 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00058 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46998 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46625 * 119.99989 * 22 20 18 25 25 H 1.48498 * 109.46975 * 240.00083 * 22 20 18 26 26 C 1.53002 * 109.47029 * 300.00108 * 17 16 15 27 27 C 1.53002 * 109.47491 * 59.99819 * 26 17 16 28 28 H 1.09005 * 109.47195 * 59.99843 * 1 2 3 29 29 H 1.08997 * 109.47289 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47047 * 300.00194 * 1 2 3 31 31 H 1.08997 * 109.47224 * 240.00308 * 2 1 3 32 32 H 1.08999 * 109.46941 * 119.99480 * 2 1 3 33 33 H 1.08997 * 109.46974 * 60.00155 * 3 2 1 34 34 H 1.08999 * 109.46942 * 299.99479 * 3 2 1 35 35 H 0.97001 * 120.00601 * 359.97438 * 4 3 2 36 36 H 1.08995 * 109.50481 * 299.13984 * 9 7 5 37 37 H 1.08997 * 109.49955 * 59.21920 * 9 7 5 38 38 H 1.08997 * 109.52095 * 62.27349 * 10 9 7 39 39 H 1.08999 * 109.51960 * 182.46122 * 10 9 7 40 40 H 1.08998 * 109.46768 * 297.65644 * 11 10 9 41 41 H 1.08997 * 109.53937 * 177.57739 * 11 10 9 42 42 H 1.09007 * 109.46247 * 180.83243 * 12 11 10 43 43 H 1.08991 * 109.46879 * 60.85829 * 12 11 10 44 44 H 1.08996 * 109.46863 * 310.51758 * 14 13 7 45 45 H 1.09004 * 109.47154 * 300.00185 * 15 14 13 46 46 H 1.08991 * 109.46938 * 60.00356 * 15 14 13 47 47 H 1.08996 * 109.46912 * 300.00078 * 16 15 14 48 48 H 1.09005 * 109.46699 * 180.02562 * 16 15 14 49 49 H 1.09004 * 109.47201 * 59.99714 * 17 16 15 50 50 H 0.97003 * 119.99935 * 180.02562 * 21 20 18 51 51 H 1.09004 * 109.46807 * 299.99847 * 26 17 16 52 52 H 1.08995 * 109.47301 * 180.02562 * 26 17 16 53 53 H 1.08996 * 109.47296 * 180.02562 * 27 26 17 54 54 H 1.08996 * 109.46797 * 60.00027 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1788 2.6098 -0.0012 6 8 3.5725 3.6600 -0.0008 7 6 5.6859 2.6098 -0.0013 8 1 6.0489 1.7262 0.5238 9 6 6.1957 2.5908 -1.4441 10 6 7.7268 2.6117 -1.4404 11 6 8.2106 3.8533 -0.6861 12 6 7.6424 3.8356 0.7348 13 7 6.1751 3.8172 0.6763 14 6 5.5932 3.9395 2.0196 15 6 5.9118 5.3232 2.5894 16 6 5.3062 5.4503 3.9887 17 6 5.8990 4.3743 4.9007 18 6 5.3030 4.4999 6.2791 19 1 4.7516 3.6752 6.7061 20 6 5.4615 5.6675 6.9950 21 7 6.1324 6.6719 6.4746 22 14 4.7220 5.8235 8.7033 23 1 4.0208 4.5629 9.0561 24 1 5.8027 6.0807 9.6887 25 1 3.7553 6.9505 8.7232 26 6 5.5804 2.9906 4.3308 27 6 6.1860 2.8634 2.9315 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9900 0.6025 -0.0006 36 1 5.8453 1.6869 -1.9421 37 1 5.8212 3.4667 -1.9739 38 1 8.1020 1.7161 -0.9453 39 1 8.0931 2.6424 -2.4665 40 1 7.8683 4.7493 -1.2038 41 1 9.2997 3.8519 -0.6425 42 1 7.9733 4.7260 1.2695 43 1 7.9962 2.9464 1.2565 44 1 4.5124 3.8110 1.9604 45 1 6.9927 5.4517 2.6486 46 1 5.4899 6.0897 1.9396 47 1 4.2255 5.3216 3.9299 48 1 5.5329 6.4363 4.3945 49 1 6.9798 4.5030 4.9595 50 1 6.2442 7.4933 6.9784 51 1 4.4996 2.8620 4.2720 52 1 6.0023 2.2240 4.9807 53 1 5.9587 1.8778 2.5254 54 1 7.2668 2.9921 2.9904 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173339756.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:20 Heat of formation + Delta-G solvation = -84.952197 kcal Electronic energy + Delta-G solvation = -29497.572628 eV Core-core repulsion = 25852.753331 eV Total energy + Delta-G solvation = -3644.819297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.74330 -39.81670 -38.19901 -36.72246 -35.24443 -33.67753 -33.47809 -32.06245 -31.42849 -30.01029 -27.57210 -26.60240 -24.86650 -24.67911 -23.41464 -22.58019 -22.06895 -21.46300 -20.67035 -19.82409 -18.42716 -18.13573 -17.42793 -16.89360 -16.65383 -16.48098 -15.96870 -15.51835 -15.28215 -15.15311 -14.98355 -14.89321 -14.53117 -14.35288 -14.11606 -13.94284 -13.83757 -13.58087 -13.44231 -13.20198 -12.95074 -12.93099 -12.88531 -12.58188 -12.40910 -12.30520 -12.16945 -12.04356 -11.88734 -11.83079 -11.76063 -11.62188 -11.50948 -11.32837 -11.06814 -10.76033 -10.65079 -10.55954 -10.36577 -10.09192 -9.10079 -8.08145 -6.22430 1.37946 1.39672 1.50973 1.61935 2.11974 2.42342 2.91856 3.18124 3.68797 3.82831 3.85664 3.93237 4.01119 4.05759 4.10722 4.11298 4.27257 4.31859 4.34757 4.36009 4.51262 4.57552 4.61776 4.65348 4.75024 4.77840 4.80140 4.83403 4.85278 4.87564 4.94740 4.98123 5.00244 5.10505 5.13426 5.14500 5.22433 5.23948 5.27298 5.31078 5.34030 5.37480 5.41218 5.49355 5.51700 5.61621 5.66998 6.00245 6.05732 6.19269 6.21641 6.40478 6.60194 6.89927 7.30021 7.45445 8.96042 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.010526 B = 0.003963 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.506208 B = 7063.122479 C = 9113.478590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.117 3.883 4 N -0.720 5.720 5 C 0.512 3.488 6 O -0.567 6.567 7 C 0.070 3.930 8 H 0.077 0.923 9 C -0.100 4.100 10 C -0.111 4.111 11 C -0.115 4.115 12 C 0.049 3.951 13 N -0.524 5.524 14 C 0.099 3.901 15 C -0.091 4.091 16 C -0.097 4.097 17 C 0.050 3.950 18 C -0.536 4.536 19 H 0.049 0.951 20 C 0.012 3.988 21 N -0.916 5.916 22 Si 0.952 3.048 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.282 1.282 26 C -0.095 4.095 27 C -0.134 4.134 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.415 0.585 36 H 0.094 0.906 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.042 0.958 47 H 0.014 0.986 48 H 0.059 0.941 49 H -0.003 1.003 50 H 0.260 0.740 51 H 0.036 0.964 52 H 0.050 0.950 53 H 0.068 0.932 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.628 -16.484 -19.172 25.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.007 4.007 4 N -0.374 5.374 5 C 0.299 3.701 6 O -0.445 6.445 7 C -0.041 4.041 8 H 0.095 0.905 9 C -0.138 4.138 10 C -0.148 4.148 11 C -0.153 4.153 12 C -0.078 4.078 13 N -0.248 5.248 14 C -0.009 4.009 15 C -0.129 4.129 16 C -0.136 4.136 17 C 0.031 3.969 18 C -0.574 4.574 19 H 0.068 0.932 20 C -0.187 4.187 21 N -0.555 5.555 22 Si 0.778 3.222 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.208 1.208 26 C -0.134 4.134 27 C -0.173 4.173 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.252 0.748 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.033 0.967 48 H 0.077 0.923 49 H 0.015 0.985 50 H 0.069 0.931 51 H 0.055 0.945 52 H 0.068 0.932 53 H 0.087 0.913 54 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.174 -15.157 -19.429 24.670 hybrid contribution -0.202 -0.102 1.889 1.902 sum -1.376 -15.259 -17.540 23.289 Atomic orbital electron populations 1.21703 0.94336 1.02863 1.02020 1.21678 0.97109 0.93591 1.03801 1.21420 0.79331 0.98991 1.00935 1.45959 1.07575 1.08588 1.75248 1.20933 0.90607 0.83593 0.75007 1.90706 1.70969 1.33113 1.49713 1.21705 0.90139 0.93580 0.98713 0.90531 1.21546 0.97288 1.03082 0.91869 1.21554 0.93539 0.98073 1.01660 1.21621 1.00619 0.99137 0.93923 1.22251 0.85925 1.01119 0.98516 1.61927 1.08002 1.37066 1.17838 1.21538 0.98120 0.94890 0.86369 1.21419 0.99793 0.95949 0.95744 1.21376 0.96556 1.02236 0.93429 1.18581 0.94301 0.91173 0.92795 1.21647 1.34284 0.99674 1.01822 0.93230 1.25750 0.95647 0.95639 1.01629 1.70031 1.42146 1.04834 1.38520 0.85597 0.78303 0.78058 0.80263 1.19181 1.20347 1.20806 1.21401 0.98729 0.98075 0.95150 1.22110 1.00625 0.98652 0.95873 0.92310 0.90770 0.93263 0.89483 0.90702 0.93976 0.92385 0.74814 0.88726 0.92449 0.90573 0.89524 0.92267 0.89696 0.91698 0.93668 0.92175 0.92913 0.93928 0.96747 0.92259 0.98530 0.93114 0.94484 0.93171 0.91344 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 71.98 0.71 -1.12 16 2 C -0.12 -1.53 6.05 30.60 0.19 -1.35 16 3 C 0.12 2.35 5.67 86.38 0.49 2.84 16 4 N -0.72 -14.47 5.56 -463.06 -2.57 -17.05 16 5 C 0.51 14.48 5.77 87.66 0.51 14.98 16 6 O -0.57 -22.13 15.31 -3.00 -0.05 -22.18 16 7 C 0.07 1.69 1.91 44.20 0.08 1.77 16 8 H 0.08 1.54 6.89 -2.38 -0.02 1.52 16 9 C -0.10 -1.81 5.35 30.65 0.16 -1.64 16 10 C -0.11 -1.63 6.00 30.68 0.18 -1.45 16 11 C -0.12 -2.24 6.09 30.65 0.19 -2.06 16 12 C 0.05 1.28 4.53 86.33 0.39 1.67 16 13 N -0.52 -16.08 4.20 -850.35 -3.57 -19.65 16 14 C 0.10 3.70 1.83 44.92 0.08 3.78 16 15 C -0.09 -3.98 5.14 30.60 0.16 -3.82 16 16 C -0.10 -5.06 4.98 30.59 0.15 -4.90 16 17 C 0.05 2.62 2.10 -11.54 -0.02 2.59 16 18 C -0.54 -30.88 8.56 25.60 0.22 -30.66 16 19 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 20 C 0.01 0.68 5.30 84.66 0.45 1.13 16 21 N -0.92 -54.86 11.32 21.45 0.24 -54.62 16 22 Si 0.95 45.15 29.54 68.60 2.03 47.18 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 25 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 26 C -0.10 -4.10 5.14 30.60 0.16 -3.94 16 27 C -0.13 -4.66 4.45 30.60 0.14 -4.52 16 28 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 35 H 0.42 5.27 8.47 -92.71 -0.79 4.49 16 36 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.06 1.95 6.23 -2.38 -0.01 1.93 16 43 H 0.05 1.10 6.57 -2.39 -0.02 1.09 16 44 H 0.06 2.57 5.75 -2.39 -0.01 2.56 16 45 H 0.05 2.26 6.44 -2.38 -0.02 2.24 16 46 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.06 3.45 6.07 -2.38 -0.01 3.44 16 49 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 50 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 51 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 52 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 53 H 0.07 1.98 6.83 -2.39 -0.02 1.96 16 54 H 0.06 2.21 6.45 -2.39 -0.02 2.19 16 Total: -1.00 -72.42 398.37 0.38 -72.03 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.07 Total: 20.98 kcal Atomic # 6 Polarization: -30.94 SS G_CDS: 4.23 Total: -26.70 kcal Atomic # 7 Polarization: -85.41 SS G_CDS: -5.90 Total: -91.31 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.05 Total: -22.18 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -72.42 0.38 -72.03 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339756.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.921 kcal (2) G-P(sol) polarization free energy of solvation -72.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds