Wall clock time and date at job start Tue Mar 31 2020 14:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.46753 * 2 1 4 4 O 1.21283 * 120.00278 * 0.02562 * 3 2 1 5 5 N 1.34781 * 120.00227 * 179.97438 * 3 2 1 6 6 C 1.46497 * 119.99593 * 359.97438 * 5 3 2 7 7 C 1.46498 * 120.00050 * 180.02562 * 5 3 2 8 8 C 1.53119 * 109.51687 * 239.99922 * 7 5 3 9 9 C 1.53044 * 109.27589 * 182.44060 * 8 7 5 10 10 N 1.46847 * 109.51335 * 59.18419 * 9 8 7 11 11 C 1.46899 * 110.99862 * 174.15436 * 10 9 8 12 12 C 1.52999 * 109.47313 * 295.00159 * 11 10 9 13 13 C 1.52995 * 109.46957 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47611 * 60.00079 * 13 12 11 15 15 C 1.50699 * 109.46910 * 59.99860 * 14 13 12 16 16 H 1.08007 * 119.99724 * 240.00164 * 15 14 13 17 17 C 1.37871 * 120.00203 * 60.00392 * 15 14 13 18 18 N 1.31519 * 120.00008 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00145 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47264 * 89.99697 * 19 17 15 21 21 H 1.48499 * 109.47234 * 209.99887 * 19 17 15 22 22 H 1.48503 * 109.46992 * 329.99790 * 19 17 15 23 23 C 1.52999 * 109.46895 * 299.99958 * 14 13 12 24 24 C 1.53003 * 109.47187 * 60.00033 * 23 14 13 25 25 C 1.46847 * 111.20163 * 298.24410 * 10 9 8 26 26 C 1.53041 * 109.51486 * 61.75514 * 25 10 9 27 27 H 1.09008 * 109.46464 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47499 * 299.99800 * 1 2 3 29 29 H 1.08999 * 109.46957 * 60.00210 * 1 2 3 30 30 H 1.08992 * 109.47499 * 240.00200 * 2 1 3 31 31 H 1.08999 * 109.46957 * 119.99790 * 2 1 3 32 32 H 1.08994 * 109.47360 * 270.00024 * 6 5 3 33 33 H 1.09000 * 109.47076 * 30.00411 * 6 5 3 34 34 H 1.09000 * 109.46949 * 149.99956 * 6 5 3 35 35 H 1.08993 * 109.57517 * 0.15444 * 7 5 3 36 36 H 1.09000 * 109.50507 * 62.50725 * 8 7 5 37 37 H 1.08999 * 109.54263 * 302.39658 * 8 7 5 38 38 H 1.09002 * 109.46396 * 179.19729 * 9 8 7 39 39 H 1.08994 * 109.46485 * 299.17654 * 9 8 7 40 40 H 1.08996 * 109.47054 * 55.00419 * 11 10 9 41 41 H 1.09005 * 109.47169 * 300.00119 * 12 11 10 42 42 H 1.08994 * 109.47231 * 60.00055 * 12 11 10 43 43 H 1.09004 * 109.47357 * 299.99469 * 13 12 11 44 44 H 1.09003 * 109.47463 * 179.97438 * 13 12 11 45 45 H 1.09005 * 109.47380 * 179.97438 * 14 13 12 46 46 H 0.96998 * 119.99532 * 180.02562 * 18 17 15 47 47 H 1.08996 * 109.47272 * 299.99732 * 23 14 13 48 48 H 1.09006 * 109.46922 * 179.97438 * 23 14 13 49 49 H 1.08995 * 109.46944 * 180.02562 * 24 23 14 50 50 H 1.08996 * 109.47260 * 59.99692 * 24 23 14 51 51 H 1.09005 * 109.46836 * 301.74653 * 25 10 9 52 52 H 1.08995 * 109.45748 * 181.76188 * 25 10 9 53 53 H 1.08996 * 109.50341 * 180.87808 * 26 25 10 54 54 H 1.08996 * 109.50165 * 60.75338 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3574 1.6673 0.0005 6 6 4.3094 0.5538 0.0017 7 6 3.8456 3.0485 0.0011 8 6 4.6968 3.2907 -1.2484 9 6 5.2538 4.7157 -1.2118 10 7 6.0666 4.8938 -0.0018 11 6 6.7304 6.2043 -0.0017 12 6 7.7345 6.2675 -1.1544 13 6 8.4262 7.6321 -1.1538 14 6 9.1605 7.8313 0.1736 15 6 10.1913 6.7455 0.3452 16 1 10.1358 6.0771 1.1919 17 6 11.2053 6.6053 -0.5784 18 7 11.2732 7.4195 -1.6090 19 14 12.4835 5.2598 -0.3653 20 1 12.0233 4.0265 -1.0526 21 1 13.7722 5.7035 -0.9548 22 1 12.6710 4.9798 1.0810 23 6 8.1564 7.7680 1.3263 24 6 7.4647 6.4033 1.3258 25 6 5.2594 4.7128 1.2115 26 6 4.7026 3.2878 1.2472 27 1 -0.3632 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.5450 0.2782 1.0295 33 1 3.8694 -0.3010 -0.5120 34 1 5.2222 0.8557 -0.5119 35 1 2.9990 3.7350 0.0038 36 1 4.0809 3.1636 -2.1387 37 1 5.5215 2.5783 -1.2715 38 1 5.8721 4.8867 -2.0931 39 1 4.4289 5.4280 -1.2032 40 1 5.9846 6.9893 -0.1260 41 1 8.4804 5.4824 -1.0300 42 1 7.2115 6.1253 -2.1000 43 1 7.6807 8.4175 -1.2780 44 1 9.1420 7.6771 -1.9747 45 1 9.6537 8.8033 0.1738 46 1 11.9863 7.3205 -2.2590 47 1 7.4108 8.5533 1.2022 48 1 8.6796 7.9094 2.2721 49 1 6.7490 6.3585 2.1467 50 1 8.2102 5.6180 1.4499 51 1 4.4343 5.4251 1.2085 52 1 5.8818 4.8817 2.0902 53 1 4.0907 3.1584 2.1400 54 1 5.5272 2.5752 1.2640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173340932.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:44 Heat of formation + Delta-G solvation = -67.273149 kcal Electronic energy + Delta-G solvation = -29052.384386 eV Core-core repulsion = 25408.331710 eV Total energy + Delta-G solvation = -3644.052676 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.39415 -40.37011 -38.56421 -36.55773 -34.56560 -33.78846 -32.58765 -32.29657 -30.96255 -29.63663 -27.81035 -26.82923 -25.86731 -24.63729 -23.91271 -22.44207 -21.90292 -20.67138 -20.43432 -19.95098 -18.15081 -17.79416 -17.57243 -16.84053 -16.75785 -16.53474 -15.84725 -15.64960 -15.17367 -15.03293 -14.81328 -14.73508 -14.44881 -14.33174 -14.15130 -13.79131 -13.75835 -13.44833 -13.33425 -13.20528 -12.96260 -12.84957 -12.80178 -12.54127 -12.43928 -12.39760 -12.16387 -12.14328 -12.06846 -12.02023 -11.81200 -11.63030 -11.47116 -11.37909 -10.93546 -10.75458 -10.63859 -10.38206 -10.25089 -9.61513 -9.18438 -7.98569 -6.07855 1.44018 1.45645 1.54014 1.63108 2.01434 2.49874 2.93034 3.30032 3.55416 3.79301 3.81843 4.02732 4.07129 4.14661 4.19108 4.22624 4.25125 4.31648 4.40590 4.43520 4.49843 4.59234 4.61715 4.68203 4.71289 4.74081 4.82046 4.85852 4.88297 4.91665 4.95633 4.97987 5.00020 5.01283 5.04718 5.06304 5.12077 5.13572 5.22989 5.30416 5.34065 5.43425 5.56586 5.58349 5.68940 5.73662 5.77931 6.00355 6.20921 6.26496 6.31377 6.43632 6.50430 7.01208 7.18756 7.57656 9.06472 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.002805 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.205636 B = 9978.926084 C =10516.760142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.135 4.135 3 C 0.500 3.500 4 O -0.595 6.595 5 N -0.610 5.610 6 C 0.067 3.933 7 C 0.142 3.858 8 C -0.111 4.111 9 C 0.056 3.944 10 N -0.536 5.536 11 C 0.104 3.896 12 C -0.077 4.077 13 C -0.103 4.103 14 C 0.038 3.962 15 C -0.498 4.498 16 H 0.054 0.946 17 C 0.012 3.988 18 N -0.921 5.921 19 Si 0.942 3.058 20 H -0.277 1.277 21 H -0.291 1.291 22 H -0.269 1.269 23 C -0.102 4.102 24 C -0.092 4.092 25 C 0.053 3.947 26 C -0.110 4.110 27 H 0.086 0.914 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.025 0.975 40 H 0.026 0.974 41 H 0.051 0.949 42 H 0.042 0.958 43 H 0.021 0.979 44 H 0.059 0.941 45 H -0.013 1.013 46 H 0.256 0.744 47 H 0.045 0.955 48 H 0.049 0.951 49 H 0.066 0.934 50 H 0.060 0.940 51 H 0.025 0.975 52 H 0.087 0.913 53 H 0.071 0.929 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.282 -17.149 3.357 24.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.174 4.174 3 C 0.291 3.709 4 O -0.476 6.476 5 N -0.341 5.341 6 C -0.074 4.074 7 C 0.038 3.962 8 C -0.149 4.149 9 C -0.072 4.072 10 N -0.261 5.261 11 C -0.004 4.004 12 C -0.115 4.115 13 C -0.142 4.142 14 C 0.019 3.981 15 C -0.536 4.536 16 H 0.072 0.928 17 C -0.185 4.185 18 N -0.562 5.562 19 Si 0.769 3.231 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.194 1.194 23 C -0.140 4.140 24 C -0.130 4.130 25 C -0.075 4.075 26 C -0.148 4.148 27 H 0.105 0.895 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.043 0.957 40 H 0.044 0.956 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.039 0.961 44 H 0.077 0.923 45 H 0.005 0.995 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.067 0.933 49 H 0.084 0.916 50 H 0.079 0.921 51 H 0.044 0.956 52 H 0.106 0.894 53 H 0.089 0.911 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.213 -17.029 3.215 24.425 hybrid contribution 0.503 0.709 -0.281 0.913 sum -16.710 -16.320 2.935 23.541 Atomic orbital electron populations 1.21547 0.93742 1.02590 1.01659 1.21727 0.97893 0.91378 1.06433 1.21636 0.81635 0.93116 0.74533 1.90668 1.56177 1.48476 1.52310 1.48074 1.06238 1.07260 1.72521 1.22079 0.93342 0.88652 1.03342 1.20985 0.96252 0.83439 0.95554 1.21814 0.99295 0.96616 0.97197 1.22061 0.95120 0.96309 0.93709 1.61964 1.30761 1.31136 1.02192 1.21427 0.94263 0.88063 0.96604 1.21214 0.96643 0.98060 0.95591 1.21382 0.96899 0.94681 1.01230 1.18696 0.92736 0.94731 0.91912 1.21356 1.09494 1.14816 1.07979 0.92823 1.25618 0.99570 0.97927 0.95401 1.70020 1.33463 1.39144 1.13584 0.85798 0.78885 0.80142 0.78293 1.20300 1.21668 1.19405 1.21471 0.97428 0.96438 0.98685 1.21465 0.98450 0.97671 0.95404 1.22155 0.95357 0.96178 0.93795 1.21807 0.99176 0.96802 0.97029 0.89498 0.93757 0.93794 0.86428 0.86498 0.91125 0.88384 0.90497 0.91209 0.91291 0.89938 0.90594 0.95672 0.95596 0.93044 0.93976 0.96057 0.92285 0.99487 0.93513 0.93642 0.93263 0.91604 0.92134 0.95637 0.89431 0.91072 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.20 71.98 0.66 -1.18 16 2 C -0.14 -1.52 4.97 29.85 0.15 -1.37 16 3 C 0.50 10.40 7.67 87.66 0.67 11.07 16 4 O -0.60 -18.22 15.31 -3.04 -0.05 -18.27 16 5 N -0.61 -11.04 2.77 -822.16 -2.28 -13.31 16 6 C 0.07 0.70 9.25 127.77 1.18 1.88 16 7 C 0.14 3.17 2.59 45.07 0.12 3.29 16 8 C -0.11 -2.48 5.40 30.65 0.17 -2.31 16 9 C 0.06 1.54 5.29 86.33 0.46 1.99 16 10 N -0.54 -16.02 4.52 -871.09 -3.94 -19.96 16 11 C 0.10 3.66 1.96 44.92 0.09 3.75 16 12 C -0.08 -3.20 4.89 30.59 0.15 -3.05 16 13 C -0.10 -4.89 5.24 30.59 0.16 -4.73 16 14 C 0.04 1.87 2.59 -11.54 -0.03 1.84 16 15 C -0.50 -26.48 6.61 25.60 0.17 -26.31 16 16 H 0.05 2.82 6.71 -2.91 -0.02 2.80 16 17 C 0.01 0.67 5.30 84.65 0.45 1.12 16 18 N -0.92 -53.16 11.32 21.45 0.24 -52.92 16 19 Si 0.94 43.46 29.54 68.60 2.03 45.49 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 C -0.10 -4.13 5.41 30.60 0.17 -3.97 16 24 C -0.09 -3.32 4.44 30.60 0.14 -3.18 16 25 C 0.05 1.37 5.00 86.33 0.43 1.80 16 26 C -0.11 -2.35 5.41 30.65 0.17 -2.18 16 27 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.04 0.74 8.10 -2.39 -0.02 0.72 16 29 H 0.04 0.73 8.10 -2.39 -0.02 0.71 16 30 H 0.12 0.76 7.40 -2.39 -0.02 0.74 16 31 H 0.12 0.77 8.11 -2.39 -0.02 0.76 16 32 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.10 0.50 6.44 -2.39 -0.02 0.48 16 34 H 0.08 0.87 6.39 -2.39 -0.02 0.86 16 35 H 0.07 1.97 6.91 -2.39 -0.02 1.95 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 1.76 6.58 -2.39 -0.02 1.74 16 38 H 0.08 2.19 6.18 -2.39 -0.01 2.17 16 39 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.03 0.92 8.13 -2.39 -0.02 0.90 16 41 H 0.05 2.41 7.22 -2.38 -0.02 2.40 16 42 H 0.04 1.61 6.40 -2.39 -0.02 1.60 16 43 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 45 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 46 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 47 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 49 H 0.07 2.01 6.19 -2.39 -0.01 1.99 16 50 H 0.06 2.42 6.62 -2.39 -0.02 2.41 16 51 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 52 H 0.09 2.23 5.83 -2.39 -0.01 2.21 16 53 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 54 H 0.08 1.67 7.59 -2.39 -0.02 1.65 16 Total: -1.00 -66.54 390.69 2.15 -64.39 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.85 Total: 16.11 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: 5.29 Total: -21.54 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -5.97 Total: -86.18 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.05 Total: -18.27 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -66.54 2.15 -64.39 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173340932.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.880 kcal (2) G-P(sol) polarization free energy of solvation -66.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds