Wall clock time and date at job start Tue Mar 31 2020 15:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 115.54891 * 2 1 4 4 C 1.53002 * 117.51678 * 214.29269 * 2 1 3 5 5 C 1.52999 * 117.49273 * 145.66646 * 2 1 3 6 6 H 1.09001 * 117.49452 * 214.99915 * 5 2 1 7 7 C 1.52996 * 117.50132 * 359.97438 * 5 2 1 8 8 C 1.50702 * 109.46792 * 184.91401 * 7 5 2 9 9 O 1.21284 * 120.00429 * 353.24605 * 8 7 5 10 10 N 1.34781 * 119.99840 * 173.25262 * 8 7 5 11 11 C 1.46499 * 120.00058 * 186.22484 * 10 8 7 12 12 C 1.52997 * 109.47297 * 89.99286 * 11 10 8 13 13 C 1.53009 * 109.47163 * 179.97438 * 12 11 10 14 14 N 1.46497 * 109.46865 * 180.02562 * 13 12 11 15 15 C 1.36940 * 119.99716 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99723 * 0.02562 * 15 14 13 17 17 C 1.38808 * 120.00168 * 180.02562 * 15 14 13 18 18 N 1.31620 * 119.99881 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00327 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47031 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47172 * 119.99872 * 19 17 15 22 22 H 1.48505 * 109.47221 * 240.00381 * 19 17 15 23 23 C 1.46500 * 119.99817 * 6.21792 * 10 8 7 24 24 C 1.53003 * 109.46887 * 99.84353 * 23 10 8 25 25 C 1.54265 * 110.02821 * 303.55851 * 24 23 10 26 26 C 1.54894 * 104.19499 * 217.10536 * 25 24 23 27 27 C 1.54881 * 102.74636 * 37.94720 * 26 25 24 28 28 C 1.53872 * 110.02971 * 186.39988 * 24 23 10 29 29 H 1.08997 * 109.47404 * 274.33286 * 1 2 3 30 30 H 1.09004 * 109.46780 * 34.33371 * 1 2 3 31 31 H 1.09003 * 109.47474 * 154.32974 * 1 2 3 32 32 H 1.09000 * 117.49183 * 145.03033 * 4 2 1 33 33 H 1.08996 * 117.49904 * 0.02562 * 4 2 1 34 34 H 1.08996 * 109.47522 * 304.91476 * 7 5 2 35 35 H 1.08997 * 109.47168 * 64.92114 * 7 5 2 36 36 H 1.09001 * 109.47034 * 209.99838 * 11 10 8 37 37 H 1.09007 * 109.46995 * 329.99629 * 11 10 8 38 38 H 1.09001 * 109.47529 * 300.00249 * 12 11 10 39 39 H 1.09003 * 109.47245 * 60.00475 * 12 11 10 40 40 H 1.08992 * 109.47233 * 300.00462 * 13 12 11 41 41 H 1.09003 * 109.46413 * 60.00259 * 13 12 11 42 42 H 0.96996 * 120.00583 * 0.02562 * 14 13 12 43 43 H 0.96997 * 120.00224 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.47019 * 219.84035 * 23 10 8 45 45 H 1.08990 * 109.47426 * 339.83673 * 23 10 8 46 46 H 1.08991 * 110.01809 * 65.00570 * 24 23 10 47 47 H 1.08995 * 110.48987 * 335.79203 * 25 24 23 48 48 H 1.09003 * 110.48195 * 98.43182 * 25 24 23 49 49 H 1.08996 * 110.75599 * 279.62735 * 26 25 24 50 50 H 1.09003 * 110.90833 * 156.33310 * 26 25 24 51 51 H 1.09002 * 110.48785 * 203.37543 * 27 26 25 52 52 H 1.09002 * 110.60266 * 80.78978 * 27 26 25 53 53 H 1.09004 * 110.02950 * 238.57068 * 28 24 23 54 54 H 1.08998 * 110.03324 * 359.94315 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1211 -0.7645 5 6 2.2363 -1.1207 0.7655 6 1 3.1712 -0.8746 1.2690 7 6 1.3587 -2.1552 1.4728 8 6 2.2301 -3.0969 2.2633 9 8 3.4373 -3.0328 2.1652 10 7 1.6680 -4.0106 3.0792 11 6 2.5119 -4.8333 3.9494 12 6 2.7014 -4.1261 5.2928 13 6 3.5823 -4.9856 6.2019 14 7 3.7631 -4.3087 7.4885 15 6 4.5205 -4.8924 8.4687 16 1 4.9848 -5.8516 8.2931 17 6 4.6915 -4.2514 9.6880 18 7 4.1253 -3.0827 9.9021 19 14 5.7252 -5.0473 11.0249 20 1 6.2479 -6.3490 10.5374 21 1 6.8618 -4.1555 11.3686 22 1 4.8883 -5.2699 12.2312 23 6 0.2130 -4.1810 3.0960 24 6 -0.1680 -5.3957 2.2472 25 6 0.3796 -5.2317 0.8144 26 6 -0.7258 -5.8369 -0.0863 27 6 -2.0278 -5.3857 0.6210 28 6 -1.6987 -5.4934 2.1242 29 1 -0.3634 0.0776 1.0247 30 1 -0.3633 0.8487 -0.5796 31 1 -0.3634 -0.9262 -0.4452 32 1 3.1721 -0.8751 -1.2675 33 1 1.6120 -1.8586 -1.2680 34 1 0.6688 -1.6469 2.1463 35 1 0.7931 -2.7196 0.7314 36 1 2.0338 -5.7993 4.1115 37 1 3.4831 -4.9831 3.4776 38 1 3.1795 -3.1600 5.1308 39 1 1.7303 -3.9762 5.7647 40 1 3.1038 -5.9514 6.3640 41 1 4.5534 -5.1358 5.7302 42 1 3.3465 -3.4471 7.6460 43 1 4.2444 -2.6348 10.7542 44 1 -0.1230 -4.3345 4.1214 45 1 -0.2620 -3.2890 2.6877 46 1 0.2292 -6.3051 2.6978 47 1 0.5275 -4.1774 0.5807 48 1 1.3120 -5.7839 0.6969 49 1 -0.6545 -6.9243 -0.1075 50 1 -0.6727 -5.4279 -1.0953 51 1 -2.8523 -6.0501 0.3623 52 1 -2.2711 -4.3566 0.3566 53 1 -2.0442 -6.4508 2.5145 54 1 -2.1701 -4.6761 2.6700 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177406639.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:25 Heat of formation + Delta-G solvation = -43.652111 kcal Electronic energy + Delta-G solvation = -28208.629639 eV Core-core repulsion = 24565.601248 eV Total energy + Delta-G solvation = -3643.028391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.41637 -39.19422 -38.66013 -37.40182 -36.22486 -34.16036 -32.14532 -31.01810 -30.19600 -29.44193 -28.99075 -26.94234 -25.66356 -24.61820 -22.74379 -22.38211 -21.54627 -20.92484 -20.59948 -19.48968 -19.13888 -18.42661 -17.34493 -16.94496 -16.63387 -16.48282 -16.19772 -15.89356 -15.42919 -15.37759 -15.06447 -14.77199 -14.67251 -14.36477 -14.25858 -13.74938 -13.72990 -13.47531 -13.40257 -13.09078 -12.93547 -12.81702 -12.72251 -12.45999 -12.40363 -12.13906 -12.07242 -11.99890 -11.92060 -11.86891 -11.85632 -11.81412 -11.72724 -11.33420 -11.25661 -10.98379 -10.86943 -10.77089 -10.58448 -9.63065 -9.05422 -7.98582 -5.28811 1.45096 1.47034 1.57219 1.63407 1.98761 2.53931 2.85067 3.34851 3.49525 3.70146 3.73850 3.76280 3.82018 3.88726 3.95040 3.97283 4.07588 4.19102 4.28455 4.31012 4.45334 4.46427 4.50761 4.56313 4.56662 4.64084 4.67100 4.69267 4.74507 4.78497 4.84777 4.91013 4.93073 4.96013 4.96966 5.01611 5.04101 5.11612 5.16520 5.24674 5.26075 5.27518 5.30143 5.33332 5.41381 5.45705 5.47806 5.53749 5.56140 5.61608 6.23620 6.44367 7.21281 7.29108 8.03624 8.27718 9.25474 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012560 B = 0.002713 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.688704 B =10318.969275 C =11763.168291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.142 4.142 3 H 0.103 0.897 4 C -0.172 4.172 5 C -0.159 4.159 6 H 0.080 0.920 7 C -0.103 4.103 8 C 0.509 3.491 9 O -0.586 6.586 10 N -0.606 5.606 11 C 0.128 3.872 12 C -0.119 4.119 13 C 0.156 3.844 14 N -0.749 5.749 15 C -0.249 4.249 16 H 0.076 0.924 17 C -0.078 4.078 18 N -0.971 5.971 19 Si 0.978 3.022 20 H -0.265 1.265 21 H -0.293 1.293 22 H -0.288 1.288 23 C 0.106 3.894 24 C -0.106 4.106 25 C -0.126 4.126 26 C -0.124 4.124 27 C -0.121 4.121 28 C -0.116 4.116 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.124 0.876 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.032 0.968 41 H 0.012 0.988 42 H 0.372 0.628 43 H 0.252 0.748 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.043 0.957 49 H 0.061 0.939 50 H 0.070 0.930 51 H 0.069 0.931 52 H 0.075 0.925 53 H 0.066 0.934 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.969 -0.550 -26.230 31.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 H 0.121 0.879 4 C -0.208 4.208 5 C -0.178 4.178 6 H 0.099 0.901 7 C -0.142 4.142 8 C 0.299 3.701 9 O -0.466 6.466 10 N -0.337 5.337 11 C 0.005 3.995 12 C -0.158 4.158 13 C 0.029 3.971 14 N -0.391 5.391 15 C -0.381 4.381 16 H 0.094 0.906 17 C -0.270 4.270 18 N -0.621 5.621 19 Si 0.807 3.193 20 H -0.190 1.190 21 H -0.220 1.220 22 H -0.215 1.215 23 C -0.015 4.015 24 C -0.125 4.125 25 C -0.164 4.164 26 C -0.161 4.161 27 C -0.158 4.158 28 C -0.154 4.154 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.141 0.859 36 H 0.117 0.883 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.030 0.970 42 H 0.204 0.796 43 H 0.061 0.939 44 H 0.102 0.898 45 H 0.123 0.877 46 H 0.084 0.916 47 H 0.091 0.909 48 H 0.062 0.938 49 H 0.079 0.921 50 H 0.089 0.911 51 H 0.088 0.912 52 H 0.094 0.906 53 H 0.084 0.916 54 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.242 -0.682 -26.219 31.388 hybrid contribution 1.126 0.037 1.237 1.673 sum -16.116 -0.645 -24.983 29.737 Atomic orbital electron populations 1.21407 0.91077 1.02977 1.02524 1.22518 0.96643 0.93954 1.02903 0.87928 1.23227 1.02691 1.01970 0.92962 1.22028 1.00631 1.00304 0.94792 0.90120 1.21468 0.97526 0.95276 0.99919 1.21260 0.88633 0.80987 0.79208 1.90685 1.17438 1.71744 1.66715 1.48002 1.08305 1.37564 1.39795 1.21195 0.95791 0.94040 0.88493 1.21842 0.99783 0.98566 0.95604 1.20685 0.96236 0.94968 0.85249 1.42604 1.60946 1.23286 1.12293 1.19706 1.22645 1.02213 0.93501 0.90568 1.25652 1.02905 0.97842 1.00574 1.69835 1.50254 1.17246 1.24811 0.85006 0.77697 0.77824 0.78820 1.18962 1.22002 1.21525 1.22076 0.77963 0.99755 1.01751 1.22153 0.96784 0.98015 0.95596 1.22596 0.97875 1.01234 0.94646 1.22487 0.94677 1.00316 0.98645 1.22354 0.97113 1.02006 0.94356 1.22135 0.93253 1.02738 0.97269 0.91638 0.91214 0.91392 0.89347 0.87444 0.86946 0.85889 0.88347 0.91804 0.94440 0.91278 0.94965 0.97047 0.79599 0.93881 0.89801 0.87736 0.91551 0.90901 0.93845 0.92051 0.91080 0.91206 0.90616 0.91558 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.20 71.98 0.66 -0.58 16 2 C -0.14 -2.14 6.41 -10.79 -0.07 -2.21 16 3 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 4 C -0.17 -2.84 9.82 30.59 0.30 -2.54 16 5 C -0.16 -3.29 5.35 -10.80 -0.06 -3.34 16 6 H 0.08 2.26 7.42 -2.39 -0.02 2.24 16 7 C -0.10 -1.85 3.36 29.85 0.10 -1.75 16 8 C 0.51 13.63 6.86 87.66 0.60 14.23 16 9 O -0.59 -21.76 15.19 -3.04 -0.05 -21.81 16 10 N -0.61 -14.09 2.18 -821.80 -1.79 -15.88 16 11 C 0.13 3.60 5.45 86.38 0.47 4.07 16 12 C -0.12 -4.18 5.65 30.60 0.17 -4.00 16 13 C 0.16 6.67 6.26 86.38 0.54 7.21 16 14 N -0.75 -40.75 5.60 -343.45 -1.92 -42.68 16 15 C -0.25 -14.62 9.99 84.03 0.84 -13.78 16 16 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 17 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 18 N -0.97 -61.43 13.06 21.65 0.28 -61.14 16 19 Si 0.98 47.46 29.55 68.60 2.03 49.49 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 21 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 22 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 23 C 0.11 1.62 4.70 86.38 0.41 2.03 16 24 C -0.11 -1.42 3.19 -10.07 -0.03 -1.45 16 25 C -0.13 -1.79 5.60 31.67 0.18 -1.61 16 26 C -0.12 -1.35 6.91 31.88 0.22 -1.13 16 27 C -0.12 -1.03 6.83 31.66 0.22 -0.82 16 28 C -0.12 -1.13 6.46 31.32 0.20 -0.93 16 29 H 0.06 0.63 7.83 -2.39 -0.02 0.61 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.54 7.90 -2.39 -0.02 0.52 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.11 1.42 7.94 -2.39 -0.02 1.40 16 34 H 0.11 1.60 6.99 -2.39 -0.02 1.59 16 35 H 0.12 1.60 4.83 -2.39 -0.01 1.58 16 36 H 0.10 2.29 7.87 -2.39 -0.02 2.27 16 37 H 0.06 2.07 7.35 -2.38 -0.02 2.06 16 38 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.37 21.49 7.67 -92.71 -0.71 20.78 16 43 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 44 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.10 1.13 6.00 -2.39 -0.01 1.12 16 46 H 0.07 1.05 7.94 -2.39 -0.02 1.03 16 47 H 0.07 0.98 3.99 -2.39 -0.01 0.97 16 48 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 50 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 52 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 53 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 54 H 0.08 0.62 7.67 -2.39 -0.02 0.60 16 Total: -1.00 -74.81 415.97 3.91 -70.90 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: 0.14 Total: 31.89 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 5.22 Total: -10.77 kcal Atomic # 7 Polarization: -116.27 SS G_CDS: -3.43 Total: -119.70 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.05 Total: -21.81 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -74.81 3.91 -70.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177406639.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.247 kcal (2) G-P(sol) polarization free energy of solvation -74.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds