Wall clock time and date at job start Tue Mar 31 2020 15:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 115.55847 * 2 1 4 4 C 1.53072 * 117.49052 * 145.71055 * 2 1 3 5 5 C 1.52998 * 59.98467 * 107.48298 * 4 2 1 6 6 H 1.09001 * 117.50023 * 252.50259 * 5 4 2 7 7 C 1.53002 * 117.50010 * 107.49913 * 5 4 2 8 8 C 1.50696 * 109.47292 * 116.25597 * 7 5 4 9 9 O 1.21280 * 119.99651 * 354.88507 * 8 7 5 10 10 N 1.34774 * 120.00098 * 174.88536 * 8 7 5 11 11 C 1.46506 * 119.99921 * 184.95330 * 10 8 7 12 12 C 1.53002 * 109.46626 * 269.99612 * 11 10 8 13 13 C 1.53008 * 109.46666 * 179.97438 * 12 11 10 14 14 N 1.46501 * 109.46698 * 180.02562 * 13 12 11 15 15 C 1.36933 * 119.99507 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00452 * 359.97438 * 15 14 13 17 17 C 1.38820 * 119.99674 * 180.02562 * 15 14 13 18 18 N 1.31614 * 120.00290 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99802 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47095 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47270 * 119.99563 * 19 17 15 22 22 H 1.48502 * 109.46922 * 239.99541 * 19 17 15 23 23 C 1.46495 * 120.00130 * 4.94983 * 10 8 7 24 24 C 1.53007 * 109.47346 * 273.94879 * 23 10 8 25 25 C 1.54263 * 110.02718 * 291.47872 * 24 23 10 26 26 C 1.54899 * 104.19357 * 217.10343 * 25 24 23 27 27 C 1.54886 * 102.74546 * 37.94316 * 26 25 24 28 28 C 1.53876 * 110.03174 * 174.31283 * 24 23 10 29 29 H 1.08994 * 109.47464 * 205.69129 * 1 2 3 30 30 H 1.09007 * 109.46808 * 325.68728 * 1 2 3 31 31 H 1.08999 * 109.47583 * 85.68504 * 1 2 3 32 32 H 1.08993 * 117.49886 * 359.97438 * 4 2 1 33 33 H 1.09003 * 117.52904 * 214.95121 * 4 2 1 34 34 H 1.08994 * 109.47177 * 356.25174 * 7 5 4 35 35 H 1.09006 * 109.46623 * 236.25511 * 7 5 4 36 36 H 1.08999 * 109.47027 * 29.99603 * 11 10 8 37 37 H 1.09001 * 109.46606 * 149.99884 * 11 10 8 38 38 H 1.08998 * 109.47278 * 300.00293 * 12 11 10 39 39 H 1.09001 * 109.46982 * 60.00115 * 12 11 10 40 40 H 1.08999 * 109.47112 * 300.00068 * 13 12 11 41 41 H 1.09001 * 109.46481 * 60.00324 * 13 12 11 42 42 H 0.96999 * 120.00195 * 0.02562 * 14 13 12 43 43 H 0.96993 * 120.00281 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.47642 * 153.94651 * 23 10 8 45 45 H 1.09005 * 109.46958 * 33.94843 * 23 10 8 46 46 H 1.09001 * 110.01666 * 52.91879 * 24 23 10 47 47 H 1.09001 * 110.49261 * 335.78129 * 25 24 23 48 48 H 1.09000 * 110.48846 * 98.43222 * 25 24 23 49 49 H 1.08996 * 110.75199 * 279.62994 * 26 25 24 50 50 H 1.08998 * 110.91384 * 156.32896 * 26 25 24 51 51 H 1.08999 * 110.48798 * 203.37873 * 27 26 25 52 52 H 1.09006 * 110.60011 * 80.79465 * 27 26 25 53 53 H 1.09001 * 110.02887 * 238.56551 * 28 24 23 54 54 H 1.08997 * 110.03345 * 359.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2366 -1.1219 0.7650 5 6 2.2364 -1.1210 -0.7650 6 1 1.6111 -1.8582 -1.2686 7 6 3.5490 -0.7760 -1.4715 8 6 4.0227 -1.9686 -2.2617 9 8 3.4257 -3.0216 -2.1867 10 7 5.1097 -1.8649 -3.0516 11 6 5.5070 -2.9896 -3.9023 12 6 6.4691 -3.8964 -3.1324 13 6 6.8835 -5.0713 -4.0206 14 7 7.8043 -5.9399 -3.2832 15 6 8.3122 -7.0628 -3.8800 16 1 8.0336 -7.3084 -4.8941 17 6 9.1843 -7.8862 -3.1811 18 7 9.5234 -7.5873 -1.9450 19 14 9.8766 -9.4185 -3.9950 20 1 9.3434 -9.5290 -5.3765 21 1 11.3581 -9.3280 -4.0414 22 1 9.4781 -10.6169 -3.2137 23 6 5.8941 -0.6276 -3.0596 24 6 5.2835 0.3569 -4.0591 25 6 5.4805 -0.1612 -5.4987 26 6 5.7551 1.1177 -6.3284 27 6 6.6227 1.9684 -5.3679 28 6 6.0098 1.7109 -3.9759 29 1 -0.3634 -0.9260 0.4455 30 1 -0.3633 0.8489 0.5794 31 1 -0.3634 0.0773 -1.0247 32 1 1.6113 -1.8592 1.2683 33 1 3.1720 -0.8770 1.2683 34 1 4.3017 -0.5094 -0.7297 35 1 3.3886 0.0658 -2.1451 36 1 4.6225 -3.5584 -4.1890 37 1 6.0016 -2.6113 -4.7970 38 1 7.3536 -3.3275 -2.8456 39 1 5.9745 -4.2745 -2.2377 40 1 5.9988 -5.6400 -4.3070 41 1 7.3779 -4.6934 -4.9155 42 1 8.0542 -5.7196 -2.3722 43 1 10.1325 -8.1628 -1.4565 44 1 6.9209 -0.8501 -3.3500 45 1 5.8859 -0.1858 -2.0632 46 1 4.2217 0.4893 -3.8512 47 1 6.3337 -0.8379 -5.5472 48 1 4.5773 -0.6586 -5.8521 49 1 4.8236 1.6317 -6.5652 50 1 6.3059 0.8802 -7.2385 51 1 6.5531 3.0251 -5.6258 52 1 7.6611 1.6378 -5.3946 53 1 5.3003 2.5006 -3.7285 54 1 6.7969 1.6668 -3.2233 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177406640.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:28 Heat of formation + Delta-G solvation = -49.926667 kcal Electronic energy + Delta-G solvation = -27838.239754 eV Core-core repulsion = 24194.939278 eV Total energy + Delta-G solvation = -3643.300476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.30337 -39.24205 -38.54374 -37.37358 -36.21564 -34.20332 -32.28765 -31.10770 -30.32316 -29.47917 -28.54383 -26.90588 -25.59668 -24.59172 -22.74290 -22.13653 -21.50265 -21.17869 -20.66846 -19.95668 -19.17086 -17.95267 -17.62001 -16.70584 -16.51438 -16.34765 -16.00302 -15.82000 -15.57309 -15.37527 -15.09388 -14.99404 -14.60743 -14.26905 -14.03172 -13.91264 -13.76982 -13.48199 -13.30680 -13.07253 -13.00221 -12.82222 -12.79672 -12.45064 -12.32771 -12.19773 -12.15653 -12.05710 -11.91643 -11.86286 -11.82327 -11.77066 -11.63661 -11.42155 -11.22274 -10.98795 -10.96011 -10.79111 -10.53909 -9.62198 -9.05697 -7.98650 -5.28928 1.44809 1.46895 1.57099 1.66312 1.99413 2.53796 2.84804 3.34710 3.49125 3.71595 3.73145 3.76292 3.87641 3.88408 3.94379 4.01614 4.14047 4.22741 4.29505 4.42651 4.43948 4.49922 4.51009 4.54092 4.59606 4.60769 4.67517 4.73367 4.77000 4.78445 4.87565 4.90578 4.91297 4.94229 4.96159 4.97844 5.00555 5.10697 5.16047 5.20565 5.27319 5.27834 5.31555 5.33620 5.40170 5.45572 5.48671 5.49778 5.56255 5.67142 6.23424 6.45636 7.23310 7.28805 8.03424 8.27539 9.25507 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.009472 B = 0.002891 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.461857 B = 9683.551952 C =12024.386874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.133 4.133 3 H 0.125 0.875 4 C -0.183 4.183 5 C -0.154 4.154 6 H 0.085 0.915 7 C -0.097 4.097 8 C 0.506 3.494 9 O -0.586 6.586 10 N -0.605 5.605 11 C 0.130 3.870 12 C -0.120 4.120 13 C 0.156 3.844 14 N -0.749 5.749 15 C -0.248 4.248 16 H 0.077 0.923 17 C -0.079 4.079 18 N -0.971 5.971 19 Si 0.979 3.021 20 H -0.265 1.265 21 H -0.288 1.288 22 H -0.293 1.293 23 C 0.109 3.891 24 C -0.104 4.104 25 C -0.124 4.124 26 C -0.125 4.125 27 C -0.125 4.125 28 C -0.114 4.114 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.036 0.964 40 H 0.012 0.988 41 H 0.033 0.967 42 H 0.372 0.628 43 H 0.252 0.748 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.077 0.923 47 H 0.062 0.938 48 H 0.053 0.947 49 H 0.068 0.932 50 H 0.062 0.938 51 H 0.071 0.929 52 H 0.062 0.938 53 H 0.077 0.923 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.288 28.496 -2.040 31.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 H 0.143 0.857 4 C -0.220 4.220 5 C -0.173 4.173 6 H 0.103 0.897 7 C -0.136 4.136 8 C 0.296 3.704 9 O -0.467 6.467 10 N -0.336 5.336 11 C 0.006 3.994 12 C -0.159 4.159 13 C 0.029 3.971 14 N -0.391 5.391 15 C -0.380 4.380 16 H 0.095 0.905 17 C -0.271 4.271 18 N -0.622 5.622 19 Si 0.807 3.193 20 H -0.189 1.189 21 H -0.215 1.215 22 H -0.220 1.220 23 C -0.013 4.013 24 C -0.124 4.124 25 C -0.161 4.161 26 C -0.162 4.162 27 C -0.163 4.163 28 C -0.152 4.152 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.131 0.869 35 H 0.139 0.861 36 H 0.081 0.919 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.055 0.945 40 H 0.030 0.970 41 H 0.051 0.949 42 H 0.203 0.797 43 H 0.061 0.939 44 H 0.103 0.897 45 H 0.116 0.884 46 H 0.096 0.904 47 H 0.080 0.920 48 H 0.072 0.928 49 H 0.086 0.914 50 H 0.081 0.919 51 H 0.090 0.910 52 H 0.081 0.919 53 H 0.096 0.904 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.590 27.841 -2.164 31.056 hybrid contribution 0.594 -1.528 0.113 1.643 sum -12.996 26.313 -2.051 29.419 Atomic orbital electron populations 1.21409 0.92490 1.02219 1.02185 1.22543 0.95618 0.94524 1.02413 0.85713 1.23284 1.03188 1.01909 0.93651 1.22081 0.98242 1.02631 0.94347 0.89664 1.21317 0.96827 0.95685 0.99814 1.21332 0.79551 0.90294 0.79251 1.90698 1.57960 1.32283 1.65713 1.48042 1.27623 1.15538 1.42393 1.21286 0.97744 0.87337 0.93031 1.21856 0.99196 0.96300 0.98580 1.20691 0.91620 0.90432 0.94369 1.42612 1.54208 1.26988 1.15333 1.19710 1.20272 1.00390 0.97624 0.90516 1.25668 1.01446 1.02878 0.97075 1.69835 1.39914 1.40795 1.11683 0.84999 0.77603 0.78758 0.77948 1.18901 1.21533 1.22006 1.22070 0.95224 0.82853 1.01121 1.22227 1.00546 0.94926 0.94662 1.22485 1.00962 0.97726 0.94933 1.22495 0.99989 0.95767 0.97997 1.22364 0.99100 1.00025 0.94801 1.22135 0.99978 0.95444 0.97638 0.93386 0.90583 0.92061 0.89701 0.87983 0.86935 0.86093 0.91947 0.88145 0.91518 0.94504 0.97046 0.94944 0.79655 0.93886 0.89652 0.88435 0.90417 0.91978 0.92819 0.91364 0.91894 0.91016 0.91913 0.90445 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 10.19 71.98 0.73 -0.91 16 2 C -0.13 -1.88 6.13 -10.77 -0.07 -1.94 16 3 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 4 C -0.18 -3.29 9.83 30.62 0.30 -2.99 16 5 C -0.15 -3.07 5.09 -10.79 -0.05 -3.13 16 6 H 0.09 2.24 7.39 -2.39 -0.02 2.23 16 7 C -0.10 -1.66 4.58 29.85 0.14 -1.52 16 8 C 0.51 13.40 7.63 87.66 0.67 14.07 16 9 O -0.59 -21.88 15.25 -3.03 -0.05 -21.93 16 10 N -0.60 -13.88 2.38 -821.80 -1.95 -15.83 16 11 C 0.13 3.61 5.09 86.38 0.44 4.05 16 12 C -0.12 -4.29 5.65 30.60 0.17 -4.12 16 13 C 0.16 6.73 6.26 86.38 0.54 7.27 16 14 N -0.75 -41.06 5.60 -343.44 -1.92 -42.98 16 15 C -0.25 -14.63 9.99 84.04 0.84 -13.79 16 16 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 17 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 18 N -0.97 -61.83 13.06 21.65 0.28 -61.55 16 19 Si 0.98 47.62 29.55 68.60 2.03 49.65 16 20 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 22 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 23 C 0.11 1.63 4.25 86.38 0.37 1.99 16 24 C -0.10 -1.25 2.99 -10.07 -0.03 -1.28 16 25 C -0.12 -1.82 5.45 31.67 0.17 -1.64 16 26 C -0.12 -1.54 6.91 31.89 0.22 -1.32 16 27 C -0.13 -1.30 6.83 31.67 0.22 -1.08 16 28 C -0.11 -1.01 6.46 31.32 0.20 -0.81 16 29 H 0.05 0.71 7.90 -2.39 -0.02 0.69 16 30 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 1.65 8.05 -2.39 -0.02 1.63 16 33 H 0.10 1.62 8.03 -2.39 -0.02 1.60 16 34 H 0.11 1.50 7.27 -2.39 -0.02 1.48 16 35 H 0.12 1.41 6.35 -2.38 -0.02 1.39 16 36 H 0.06 2.00 7.50 -2.39 -0.02 1.98 16 37 H 0.10 2.33 6.09 -2.39 -0.01 2.31 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.37 21.68 7.67 -92.71 -0.71 20.97 16 43 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 44 H 0.09 1.32 7.89 -2.39 -0.02 1.30 16 45 H 0.10 1.07 6.79 -2.38 -0.02 1.05 16 46 H 0.08 0.92 6.53 -2.39 -0.02 0.90 16 47 H 0.06 1.02 6.39 -2.39 -0.02 1.01 16 48 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 52 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 53 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 54 H 0.07 0.59 7.67 -2.39 -0.02 0.57 16 Total: -1.00 -75.35 419.47 3.85 -71.50 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: 0.14 Total: 32.56 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: 5.33 Total: -11.41 kcal Atomic # 7 Polarization: -116.76 SS G_CDS: -3.59 Total: -120.36 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.05 Total: -21.93 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -75.35 3.85 -71.50 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177406640.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.570 kcal (2) G-P(sol) polarization free energy of solvation -75.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds