Wall clock time and date at job start Tue Mar 31 2020 15:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 115.55826 * 2 1 4 4 C 1.53000 * 117.49547 * 145.68820 * 2 1 3 5 5 C 1.52997 * 117.49892 * 214.30989 * 2 1 3 6 6 H 1.08995 * 117.52174 * 145.02788 * 5 2 1 7 7 C 1.53002 * 117.49874 * 0.02562 * 5 2 1 8 8 C 1.50700 * 109.47303 * 174.98595 * 7 5 2 9 9 O 1.21279 * 119.99714 * 4.96371 * 8 7 5 10 10 N 1.34772 * 120.00060 * 184.96785 * 8 7 5 11 11 C 1.46499 * 120.00398 * 176.82827 * 10 8 7 12 12 C 1.52998 * 109.47498 * 89.99322 * 11 10 8 13 13 C 1.52999 * 109.47391 * 180.02562 * 12 11 10 14 14 N 1.46500 * 109.47221 * 180.02562 * 13 12 11 15 15 C 1.36936 * 119.99925 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00133 * 359.97438 * 15 14 13 17 17 C 1.38806 * 119.99927 * 179.97438 * 15 14 13 18 18 N 1.31622 * 119.99962 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00026 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47043 * 90.00463 * 19 17 15 21 21 H 1.48503 * 109.47297 * 209.99831 * 19 17 15 22 22 H 1.48501 * 109.47241 * 330.00283 * 19 17 15 23 23 C 1.46508 * 119.99966 * 356.54722 * 10 8 7 24 24 C 1.53003 * 109.46748 * 107.83399 * 23 10 8 25 25 C 1.54257 * 110.03311 * 301.56627 * 24 23 10 26 26 C 1.54888 * 104.19730 * 217.10834 * 25 24 23 27 27 C 1.54889 * 102.75007 * 37.94020 * 26 25 24 28 28 C 1.53878 * 110.02939 * 184.39824 * 24 23 10 29 29 H 1.09005 * 109.47220 * 205.68980 * 1 2 3 30 30 H 1.09005 * 109.47120 * 325.68514 * 1 2 3 31 31 H 1.08994 * 109.46976 * 85.68735 * 1 2 3 32 32 H 1.09006 * 117.50112 * 0.02562 * 4 2 1 33 33 H 1.08999 * 117.51764 * 214.96497 * 4 2 1 34 34 H 1.09007 * 109.47046 * 54.98279 * 7 5 2 35 35 H 1.09004 * 109.47376 * 294.99035 * 7 5 2 36 36 H 1.09000 * 109.47657 * 209.99971 * 11 10 8 37 37 H 1.09003 * 109.46725 * 329.99778 * 11 10 8 38 38 H 1.09000 * 109.47196 * 300.00930 * 12 11 10 39 39 H 1.09003 * 109.46761 * 60.00478 * 12 11 10 40 40 H 1.09000 * 109.46697 * 300.00160 * 13 12 11 41 41 H 1.08991 * 109.47191 * 59.99741 * 13 12 11 42 42 H 0.97001 * 120.00035 * 359.97438 * 14 13 12 43 43 H 0.97003 * 120.00238 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.47156 * 227.83328 * 23 10 8 45 45 H 1.09000 * 109.47091 * 347.83594 * 23 10 8 46 46 H 1.09004 * 110.01844 * 63.01395 * 24 23 10 47 47 H 1.08994 * 110.48955 * 335.78787 * 25 24 23 48 48 H 1.09006 * 110.48743 * 98.43051 * 25 24 23 49 49 H 1.09007 * 110.75328 * 279.63067 * 26 25 24 50 50 H 1.08999 * 110.75844 * 156.26428 * 26 25 24 51 51 H 1.08996 * 110.48945 * 203.37953 * 27 26 25 52 52 H 1.08999 * 110.48067 * 80.73562 * 27 26 25 53 53 H 1.08992 * 110.03554 * 238.56964 * 28 24 23 54 54 H 1.08997 * 110.03224 * 359.95711 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7650 5 6 2.2365 -1.1210 -0.7650 6 1 3.1716 -0.8756 -1.2683 7 6 1.3588 -2.1559 -1.4719 8 6 2.2301 -3.0964 -2.2640 9 8 3.4376 -3.0099 -2.1921 10 7 1.6673 -4.0336 -3.0522 11 6 2.5124 -4.9022 -3.8754 12 6 2.8801 -6.1573 -3.0814 13 6 3.7632 -7.0640 -3.9410 14 7 4.1147 -8.2661 -3.1809 15 6 4.9040 -9.2296 -3.7501 16 1 5.2670 -9.1035 -4.7594 17 6 5.2375 -10.3683 -3.0298 18 7 5.9957 -11.2946 -3.5770 19 14 4.6103 -10.5860 -1.2837 20 1 3.3023 -11.2886 -1.3117 21 1 5.5864 -11.3883 -0.5035 22 1 4.4434 -9.2544 -0.6480 23 6 0.2107 -4.1880 -3.0812 24 6 -0.3316 -3.6606 -4.4112 25 6 0.0572 -2.1786 -4.5900 26 6 -1.1756 -1.5429 -5.2792 27 6 -2.3614 -2.2638 -4.5913 28 6 -1.8694 -3.7149 -4.4120 29 1 -0.3634 -0.9261 0.4455 30 1 -0.3633 0.8488 0.5794 31 1 -0.3633 0.0773 -1.0247 32 1 1.6111 -1.8588 1.2680 33 1 3.1716 -0.8756 1.2683 34 1 0.6677 -1.6475 -2.1443 35 1 0.7944 -2.7211 -0.7302 36 1 1.9704 -5.1882 -4.7768 37 1 3.4214 -4.3681 -4.1522 38 1 3.4221 -5.8712 -2.1801 39 1 1.9711 -6.6913 -2.8047 40 1 3.2214 -7.3501 -4.8425 41 1 4.6721 -6.5298 -4.2175 42 1 3.7884 -8.3795 -2.2745 43 1 6.2291 -12.0902 -3.0735 44 1 -0.0451 -5.2424 -2.9770 45 1 -0.2309 -3.6240 -2.2596 46 1 0.0633 -4.2532 -5.2364 47 1 0.2358 -1.7115 -3.6215 48 1 0.9381 -2.0893 -5.2259 49 1 -1.1679 -1.7476 -6.3499 50 1 -1.2135 -0.4701 -5.0903 51 1 -3.2456 -2.2367 -5.2280 52 1 -2.5734 -1.8105 -3.6229 53 1 -2.2208 -4.3330 -5.2380 54 1 -2.2293 -4.1176 -3.4652 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177406641.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:32 Heat of formation + Delta-G solvation = -41.973553 kcal Electronic energy + Delta-G solvation = -28254.720000 eV Core-core repulsion = 24611.764396 eV Total energy + Delta-G solvation = -3642.955603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.39221 -39.22671 -38.65530 -37.51149 -36.27720 -34.22011 -32.50170 -31.01021 -30.34983 -29.45522 -29.00999 -27.04843 -25.59838 -24.31420 -22.82388 -22.38863 -21.54634 -20.92373 -20.57327 -19.70969 -19.45351 -18.42788 -17.36430 -16.95099 -16.53443 -16.47240 -16.23309 -15.89350 -15.61264 -15.49025 -14.91910 -14.77837 -14.63372 -14.44681 -14.20903 -14.00184 -13.79992 -13.54309 -13.46519 -13.14250 -13.00765 -12.85406 -12.71951 -12.50298 -12.43142 -12.14491 -12.08687 -11.99615 -11.90614 -11.86252 -11.84782 -11.83768 -11.73727 -11.37979 -11.24544 -11.01526 -10.87438 -10.78049 -10.55143 -9.64123 -9.35450 -8.06863 -5.41277 1.34193 1.38369 1.45817 1.64548 1.97569 2.44928 2.84149 3.23969 3.49351 3.57637 3.70324 3.76090 3.78069 3.84762 3.91026 3.98084 4.07621 4.17401 4.27872 4.36330 4.39532 4.43461 4.48989 4.52297 4.56943 4.59346 4.66132 4.69086 4.71806 4.79584 4.87871 4.91682 4.93106 4.96874 4.99104 5.00618 5.03723 5.12703 5.16905 5.23446 5.24650 5.25386 5.30375 5.33966 5.41951 5.48165 5.54679 5.56609 5.60974 5.70585 6.17281 6.44158 7.02772 7.21719 7.78578 7.98315 9.14707 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011461 B = 0.003008 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.454384 B = 9305.977819 C =10895.880709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.137 4.137 3 H 0.106 0.894 4 C -0.183 4.183 5 C -0.154 4.154 6 H 0.086 0.914 7 C -0.102 4.102 8 C 0.507 3.493 9 O -0.585 6.585 10 N -0.604 5.604 11 C 0.128 3.872 12 C -0.124 4.124 13 C 0.158 3.842 14 N -0.761 5.761 15 C -0.240 4.240 16 H 0.056 0.944 17 C -0.064 4.064 18 N -0.983 5.983 19 Si 0.959 3.041 20 H -0.271 1.271 21 H -0.293 1.293 22 H -0.259 1.259 23 C 0.107 3.893 24 C -0.107 4.107 25 C -0.123 4.123 26 C -0.125 4.125 27 C -0.121 4.121 28 C -0.116 4.116 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.036 0.964 41 H 0.014 0.986 42 H 0.365 0.635 43 H 0.260 0.740 44 H 0.082 0.918 45 H 0.106 0.894 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.045 0.955 49 H 0.060 0.940 50 H 0.070 0.930 51 H 0.068 0.932 52 H 0.076 0.924 53 H 0.064 0.936 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.386 27.403 4.277 36.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.155 4.155 3 H 0.124 0.876 4 C -0.220 4.220 5 C -0.173 4.173 6 H 0.104 0.896 7 C -0.141 4.141 8 C 0.297 3.703 9 O -0.465 6.465 10 N -0.335 5.335 11 C 0.004 3.996 12 C -0.163 4.163 13 C 0.031 3.969 14 N -0.406 5.406 15 C -0.371 4.371 16 H 0.074 0.926 17 C -0.256 4.256 18 N -0.633 5.633 19 Si 0.786 3.214 20 H -0.196 1.196 21 H -0.219 1.219 22 H -0.184 1.184 23 C -0.015 4.015 24 C -0.127 4.127 25 C -0.160 4.160 26 C -0.163 4.163 27 C -0.159 4.159 28 C -0.154 4.154 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.120 0.880 33 H 0.104 0.896 34 H 0.141 0.859 35 H 0.130 0.870 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.094 0.906 40 H 0.054 0.946 41 H 0.032 0.968 42 H 0.198 0.802 43 H 0.068 0.932 44 H 0.101 0.899 45 H 0.125 0.875 46 H 0.085 0.915 47 H 0.092 0.908 48 H 0.064 0.936 49 H 0.078 0.922 50 H 0.089 0.911 51 H 0.086 0.914 52 H 0.094 0.906 53 H 0.083 0.917 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -23.648 27.360 4.130 36.398 hybrid contribution 0.832 -0.844 0.601 1.329 sum -22.815 26.516 4.731 35.299 Atomic orbital electron populations 1.21415 0.91085 1.02802 1.02729 1.22511 0.96583 0.93877 1.02516 0.87621 1.23241 1.02759 1.02407 0.93547 1.22042 1.00731 1.00137 0.94392 0.89591 1.21431 0.97576 0.95293 0.99799 1.21286 0.88651 0.81092 0.79247 1.90701 1.17382 1.72633 1.65802 1.48016 1.08006 1.34123 1.43398 1.21194 0.95397 0.89492 0.93517 1.21900 0.99608 0.96081 0.98731 1.20670 0.95947 0.85954 0.94326 1.42738 1.61611 1.20954 1.15332 1.19065 1.22304 0.97388 0.98370 0.92578 1.25556 1.00544 0.96515 1.02970 1.69889 1.43056 1.11136 1.39239 0.85348 0.77952 0.78137 0.79973 1.19620 1.21922 1.18381 1.22083 0.77495 1.02955 0.98944 1.22151 0.96541 0.96665 0.97305 1.22540 0.97717 0.94982 1.00791 1.22500 0.94528 0.99778 0.99448 1.22357 0.97555 0.94856 1.01091 1.22132 0.92896 0.97577 1.02807 0.91825 0.91257 0.91123 0.87968 0.89588 0.85931 0.86964 0.88288 0.91904 0.93787 0.90579 0.94564 0.96754 0.80184 0.93167 0.89920 0.87540 0.91517 0.90837 0.93631 0.92163 0.91103 0.91370 0.90557 0.91727 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.19 71.98 0.66 -0.34 16 2 C -0.14 -1.80 6.41 -10.79 -0.07 -1.86 16 3 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.18 -3.02 9.82 30.59 0.30 -2.71 16 5 C -0.15 -2.87 5.37 -10.79 -0.06 -2.92 16 6 H 0.09 2.13 7.38 -2.39 -0.02 2.11 16 7 C -0.10 -1.60 3.34 29.85 0.10 -1.50 16 8 C 0.51 12.43 7.29 87.66 0.64 13.07 16 9 O -0.59 -20.59 15.22 -3.03 -0.05 -20.64 16 10 N -0.60 -12.61 2.15 -821.80 -1.76 -14.38 16 11 C 0.13 3.28 5.31 86.38 0.46 3.74 16 12 C -0.12 -3.94 5.65 30.59 0.17 -3.77 16 13 C 0.16 6.39 6.26 86.38 0.54 6.93 16 14 N -0.76 -38.08 5.41 -343.47 -1.86 -39.94 16 15 C -0.24 -14.47 10.47 84.03 0.88 -13.59 16 16 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 17 C -0.06 -3.94 5.50 84.86 0.47 -3.48 16 18 N -0.98 -64.82 13.97 21.65 0.30 -64.52 16 19 Si 0.96 47.13 27.73 68.60 1.90 49.03 16 20 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 22 H -0.26 -11.80 6.52 99.48 0.65 -11.15 16 23 C 0.11 1.39 4.68 86.38 0.40 1.79 16 24 C -0.11 -1.27 3.01 -10.07 -0.03 -1.30 16 25 C -0.12 -1.54 5.80 31.67 0.18 -1.36 16 26 C -0.12 -1.25 6.91 31.88 0.22 -1.03 16 27 C -0.12 -0.93 6.83 31.67 0.22 -0.71 16 28 C -0.12 -1.01 6.46 31.32 0.20 -0.81 16 29 H 0.06 0.46 7.90 -2.38 -0.02 0.44 16 30 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.07 0.45 7.83 -2.39 -0.02 0.43 16 32 H 0.10 1.48 7.94 -2.38 -0.02 1.46 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.12 1.33 4.47 -2.38 -0.01 1.32 16 35 H 0.11 1.33 7.40 -2.38 -0.02 1.31 16 36 H 0.10 2.11 7.22 -2.39 -0.02 2.09 16 37 H 0.06 1.90 7.47 -2.39 -0.02 1.89 16 38 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 39 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.37 17.43 5.53 -92.71 -0.51 16.92 16 43 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 44 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.11 0.89 5.99 -2.39 -0.01 0.88 16 46 H 0.07 0.97 7.38 -2.39 -0.02 0.95 16 47 H 0.07 0.84 4.42 -2.39 -0.01 0.83 16 48 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 49 H 0.06 0.67 8.14 -2.38 -0.02 0.66 16 50 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 52 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 53 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 54 H 0.08 0.52 7.67 -2.39 -0.02 0.50 16 Total: -1.00 -77.54 412.51 4.11 -73.43 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.29 Total: 26.87 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 5.29 Total: -9.86 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -3.32 Total: -118.83 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.05 Total: -20.64 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.90 Total: 49.03 kcal Total: -77.54 4.11 -73.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177406641.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.453 kcal (2) G-P(sol) polarization free energy of solvation -77.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds