Wall clock time and date at job start Tue Mar 31 2020 15:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 115.56337 * 2 1 4 4 C 1.53002 * 117.49980 * 214.31336 * 2 1 3 5 5 C 1.52994 * 60.00029 * 252.50669 * 4 2 1 6 6 H 1.09010 * 117.49805 * 107.51154 * 5 4 2 7 7 C 1.52996 * 117.50434 * 252.50642 * 5 4 2 8 8 C 1.50698 * 109.47395 * 243.61458 * 7 5 4 9 9 O 1.21279 * 120.00115 * 359.97438 * 8 7 5 10 10 N 1.34783 * 119.99816 * 179.97438 * 8 7 5 11 11 C 1.46501 * 119.99738 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47213 * 95.42086 * 11 10 8 13 13 C 1.52995 * 109.47070 * 183.39938 * 12 11 10 14 14 N 1.46501 * 109.46950 * 180.02562 * 13 12 11 15 15 C 1.36937 * 120.00176 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99918 * 0.02562 * 15 14 13 17 17 C 1.38813 * 120.00245 * 179.97438 * 15 14 13 18 18 N 1.31622 * 119.99818 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99989 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46871 * 180.02562 * 19 17 15 21 21 H 1.48497 * 109.47508 * 300.00284 * 19 17 15 22 22 H 1.48500 * 109.46983 * 60.00567 * 19 17 15 23 23 C 1.46497 * 120.00117 * 359.97438 * 10 8 7 24 24 C 1.53002 * 109.47016 * 104.59688 * 23 10 8 25 25 C 1.54265 * 110.03285 * 291.24884 * 24 23 10 26 26 C 1.54962 * 104.15895 * 217.13974 * 25 24 23 27 27 C 1.54888 * 102.78146 * 37.88824 * 26 25 24 28 28 C 1.53882 * 110.02835 * 174.03076 * 24 23 10 29 29 H 1.09003 * 109.47288 * 274.30842 * 1 2 3 30 30 H 1.08997 * 109.47200 * 34.30655 * 1 2 3 31 31 H 1.09000 * 109.47284 * 154.30949 * 1 2 3 32 32 H 1.09005 * 117.49993 * 145.01952 * 4 2 1 33 33 H 1.08996 * 117.49627 * 0.02562 * 4 2 1 34 34 H 1.09001 * 109.47624 * 123.60552 * 7 5 4 35 35 H 1.09005 * 109.46671 * 3.61214 * 7 5 4 36 36 H 1.09005 * 109.47207 * 335.42076 * 11 10 8 37 37 H 1.08997 * 109.46982 * 215.42463 * 11 10 8 38 38 H 1.09002 * 109.46643 * 63.39668 * 12 11 10 39 39 H 1.09001 * 109.46968 * 303.40196 * 12 11 10 40 40 H 1.09000 * 109.47101 * 60.00427 * 13 12 11 41 41 H 1.09001 * 109.47436 * 299.99971 * 13 12 11 42 42 H 0.97004 * 119.99975 * 359.97438 * 14 13 12 43 43 H 0.97002 * 120.00289 * 359.97438 * 18 17 15 44 44 H 1.09003 * 109.47055 * 224.59679 * 23 10 8 45 45 H 1.08998 * 109.46891 * 344.59502 * 23 10 8 46 46 H 1.08999 * 110.01752 * 52.64565 * 24 23 10 47 47 H 1.09001 * 110.48659 * 335.78690 * 25 24 23 48 48 H 1.09003 * 110.48377 * 98.43012 * 25 24 23 49 49 H 1.09005 * 110.72012 * 279.57666 * 26 25 24 50 50 H 1.08996 * 110.76426 * 156.22393 * 26 25 24 51 51 H 1.09002 * 110.48917 * 203.40642 * 27 26 25 52 52 H 1.08993 * 110.48660 * 80.76108 * 27 26 25 53 53 H 1.08998 * 110.02957 * 238.56544 * 28 24 23 54 54 H 1.09003 * 110.03386 * 359.95448 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2364 -1.1210 -0.7650 5 6 2.2365 -1.1210 0.7649 6 1 1.6115 -1.8588 1.2682 7 6 3.5490 -0.7760 1.4714 8 6 4.0215 -1.9678 2.2634 9 8 3.3723 -2.9921 2.2633 10 7 5.1658 -1.8953 2.9720 11 6 5.6249 -3.0537 3.7424 12 6 6.6299 -3.8534 2.9108 13 6 7.0451 -5.1083 3.6813 14 7 8.0078 -5.8737 2.8853 15 6 8.5233 -7.0444 3.3742 16 1 8.2198 -7.4037 4.3465 17 6 9.4351 -7.7699 2.6198 18 7 9.8046 -7.3324 1.4347 19 14 10.1387 -9.3664 3.2871 20 1 11.0831 -9.9433 2.2968 21 1 10.8582 -9.0974 4.5580 22 1 9.0347 -10.3276 3.5371 23 6 5.9504 -0.6581 2.9717 24 6 5.7518 0.0719 4.3016 25 6 4.3090 0.6091 4.3993 26 6 4.4606 1.9744 5.1165 27 6 5.7742 2.5332 4.5155 28 6 6.6833 1.2946 4.3758 29 1 -0.3634 0.0772 1.0248 30 1 -0.3633 0.8489 -0.5792 31 1 -0.3634 -0.9261 -0.4455 32 1 3.1715 -0.8751 -1.2684 33 1 1.6112 -1.8581 -1.2687 34 1 3.3891 0.0669 2.1437 35 1 4.3022 -0.5110 0.7294 36 1 4.7726 -3.6867 3.9895 37 1 6.1028 -2.7130 4.6608 38 1 7.5091 -3.2397 2.7149 39 1 6.1706 -4.1427 1.9656 40 1 6.1658 -5.7220 3.8772 41 1 7.5043 -4.8191 4.6266 42 1 8.2796 -5.5517 2.0116 43 1 9.4395 -6.5031 1.0883 44 1 7.0060 -0.8973 2.8426 45 1 5.6200 -0.0186 2.1533 46 1 5.9558 -0.6037 5.1322 47 1 3.8847 0.7459 3.4046 48 1 3.6897 -0.0662 4.9897 49 1 4.5569 1.8357 6.1934 50 1 3.6204 2.6285 4.8837 51 1 6.2231 3.2616 5.1907 52 1 5.5870 2.9810 3.5396 53 1 7.3385 1.2127 5.2430 54 1 7.2773 1.3673 3.4648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177406642.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:36 Heat of formation + Delta-G solvation = -46.710157 kcal Electronic energy + Delta-G solvation = -27947.186355 eV Core-core repulsion = 24304.025357 eV Total energy + Delta-G solvation = -3643.160998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.40523 -39.23818 -38.62609 -37.61450 -36.41248 -34.33508 -32.18304 -31.23346 -30.32170 -29.49874 -28.55208 -26.73603 -25.64894 -24.74666 -22.89429 -22.17310 -21.61575 -21.20649 -20.76591 -19.84204 -19.35635 -18.29955 -17.53392 -16.83892 -16.66814 -16.40087 -16.11619 -15.87057 -15.73742 -15.53963 -15.19005 -15.14849 -14.54083 -14.43134 -14.13184 -13.94782 -13.69837 -13.58160 -13.35421 -13.05767 -13.01327 -12.80199 -12.62800 -12.50780 -12.36642 -12.20561 -12.06548 -11.97099 -11.90170 -11.89481 -11.87597 -11.79914 -11.42755 -11.35140 -11.27513 -10.98276 -10.95641 -10.84822 -10.54011 -9.69462 -9.18991 -8.46692 -5.40716 1.55761 1.59217 1.66794 1.83424 1.92038 2.68500 2.80990 3.34210 3.43589 3.64140 3.67590 3.69861 3.75902 3.80808 3.87719 3.92888 4.10190 4.10900 4.21670 4.31834 4.36044 4.36827 4.44947 4.47567 4.52773 4.54165 4.60114 4.63444 4.65232 4.72707 4.84572 4.86868 4.88913 4.92262 4.94379 4.95662 4.96721 5.08162 5.13730 5.15133 5.16489 5.18758 5.27397 5.30715 5.36953 5.46219 5.50354 5.51018 5.52139 5.57029 6.38541 6.42940 7.02650 7.16080 7.92535 8.04110 9.05406 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.010807 B = 0.002762 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.172642 B =10136.615916 C =12106.246029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.132 4.132 3 H 0.125 0.875 4 C -0.184 4.184 5 C -0.156 4.156 6 H 0.087 0.913 7 C -0.106 4.106 8 C 0.508 3.492 9 O -0.587 6.587 10 N -0.605 5.605 11 C 0.128 3.872 12 C -0.119 4.119 13 C 0.161 3.839 14 N -0.760 5.760 15 C -0.341 4.341 16 H 0.067 0.933 17 C -0.105 4.105 18 N -0.973 5.973 19 Si 1.132 2.868 20 H -0.290 1.290 21 H -0.273 1.273 22 H -0.279 1.279 23 C 0.107 3.893 24 C -0.107 4.107 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.121 4.121 28 C -0.117 4.117 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.038 0.962 40 H 0.010 0.990 41 H 0.030 0.970 42 H 0.360 0.640 43 H 0.243 0.757 44 H 0.079 0.921 45 H 0.107 0.893 46 H 0.064 0.936 47 H 0.078 0.922 48 H 0.047 0.953 49 H 0.060 0.940 50 H 0.074 0.926 51 H 0.068 0.932 52 H 0.075 0.925 53 H 0.063 0.937 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.651 28.002 2.991 31.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.150 4.150 3 H 0.143 0.857 4 C -0.221 4.221 5 C -0.174 4.174 6 H 0.105 0.895 7 C -0.145 4.145 8 C 0.298 3.702 9 O -0.467 6.467 10 N -0.336 5.336 11 C 0.004 3.996 12 C -0.158 4.158 13 C 0.034 3.966 14 N -0.405 5.405 15 C -0.472 4.472 16 H 0.085 0.915 17 C -0.296 4.296 18 N -0.621 5.621 19 Si 0.955 3.045 20 H -0.215 1.215 21 H -0.199 1.199 22 H -0.205 1.205 23 C -0.015 4.015 24 C -0.126 4.126 25 C -0.161 4.161 26 C -0.161 4.161 27 C -0.159 4.159 28 C -0.156 4.156 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.120 0.880 33 H 0.104 0.896 34 H 0.144 0.856 35 H 0.130 0.870 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.028 0.972 41 H 0.048 0.952 42 H 0.192 0.808 43 H 0.053 0.947 44 H 0.097 0.903 45 H 0.125 0.875 46 H 0.083 0.917 47 H 0.097 0.903 48 H 0.066 0.934 49 H 0.079 0.921 50 H 0.092 0.908 51 H 0.087 0.913 52 H 0.094 0.906 53 H 0.082 0.918 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.046 26.146 2.922 29.823 hybrid contribution -0.883 0.675 0.014 1.112 sum -14.929 26.821 2.937 30.836 Atomic orbital electron populations 1.21409 0.92418 1.02258 1.02223 1.22535 0.95682 0.94509 1.02280 0.85696 1.23286 1.03228 1.01986 0.93563 1.22088 0.98193 1.02833 0.94325 0.89483 1.21514 0.97060 0.96004 0.99904 1.21305 0.79912 0.89990 0.78969 1.90687 1.56999 1.34288 1.64695 1.48018 1.23329 1.14056 1.48210 1.21178 0.97055 0.87220 0.94124 1.21842 0.99221 0.96007 0.98693 1.20616 0.90845 0.91177 0.93981 1.42610 1.52149 1.25752 1.19946 1.20433 1.22964 1.00766 1.03031 0.91516 1.27386 0.98566 1.07727 0.95939 1.70994 1.47895 1.23792 1.19410 0.82602 0.75828 0.71285 0.74786 1.21542 1.19894 1.20473 1.22090 0.96319 0.84034 0.99016 1.22156 0.96200 0.97160 0.97126 1.22616 0.95634 0.96790 1.01083 1.22506 0.98210 0.95847 0.99548 1.22355 0.95055 0.96966 1.01480 1.22143 0.97551 0.93266 1.02598 0.92031 0.90536 0.93358 0.87986 0.89612 0.85630 0.86952 0.91603 0.88534 0.91213 0.94278 0.97234 0.95166 0.80843 0.94684 0.90287 0.87506 0.91735 0.90342 0.93364 0.92109 0.90777 0.91314 0.90603 0.91820 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 10.19 71.98 0.73 -0.88 16 2 C -0.13 -1.84 6.13 -10.80 -0.07 -1.91 16 3 H 0.13 1.21 8.14 -2.38 -0.02 1.19 16 4 C -0.18 -3.27 9.82 30.59 0.30 -2.97 16 5 C -0.16 -3.09 5.13 -10.80 -0.06 -3.14 16 6 H 0.09 2.29 7.30 -2.38 -0.02 2.27 16 7 C -0.11 -1.82 4.33 29.85 0.13 -1.69 16 8 C 0.51 13.45 7.52 87.66 0.66 14.11 16 9 O -0.59 -21.68 15.06 -3.02 -0.05 -21.73 16 10 N -0.61 -14.06 2.36 -821.80 -1.94 -16.00 16 11 C 0.13 3.62 5.42 86.38 0.47 4.08 16 12 C -0.12 -4.17 5.65 30.59 0.17 -4.00 16 13 C 0.16 7.03 6.26 86.38 0.54 7.58 16 14 N -0.76 -41.67 5.60 -343.45 -1.92 -43.59 16 15 C -0.34 -20.41 9.99 84.03 0.84 -19.57 16 16 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 17 C -0.11 -6.39 5.50 84.86 0.47 -5.93 16 18 N -0.97 -63.26 13.70 21.65 0.30 -62.97 16 19 Si 1.13 53.59 29.92 68.60 2.05 55.64 16 20 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 C 0.11 1.65 4.63 86.38 0.40 2.05 16 24 C -0.11 -1.46 3.05 -10.07 -0.03 -1.49 16 25 C -0.12 -1.59 6.07 31.69 0.19 -1.40 16 26 C -0.12 -1.29 6.91 31.91 0.22 -1.07 16 27 C -0.12 -1.08 6.83 31.67 0.22 -0.87 16 28 C -0.12 -1.26 6.46 31.32 0.20 -1.06 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.70 7.90 -2.39 -0.02 0.68 16 32 H 0.10 1.60 8.03 -2.38 -0.02 1.58 16 33 H 0.09 1.64 8.05 -2.39 -0.02 1.63 16 34 H 0.13 1.52 4.78 -2.39 -0.01 1.51 16 35 H 0.11 1.50 7.24 -2.38 -0.02 1.48 16 36 H 0.07 2.16 7.27 -2.38 -0.02 2.15 16 37 H 0.10 2.29 7.26 -2.39 -0.02 2.27 16 38 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.01 0.44 8.14 -2.39 -0.02 0.43 16 41 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.36 20.30 6.50 -92.71 -0.60 19.69 16 43 H 0.24 15.78 6.77 -92.71 -0.63 15.15 16 44 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.11 1.14 5.83 -2.39 -0.01 1.13 16 46 H 0.06 1.07 7.29 -2.39 -0.02 1.05 16 47 H 0.08 0.85 4.43 -2.39 -0.01 0.84 16 48 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 49 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 50 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 52 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 53 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 54 H 0.08 0.71 7.67 -2.39 -0.02 0.69 16 Total: -1.00 -77.72 415.98 4.23 -73.49 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: 0.40 Total: 33.31 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 5.39 Total: -18.15 kcal Atomic # 7 Polarization: -118.99 SS G_CDS: -3.57 Total: -122.56 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.05 Total: -21.73 kcal Atomic # 14 Polarization: 53.59 SS G_CDS: 2.05 Total: 55.64 kcal Total: -77.72 4.23 -73.49 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177406642.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.779 kcal (2) G-P(sol) polarization free energy of solvation -77.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds