Wall clock time and date at job start Tue Mar 31 2020 15:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46657 * 2 1 4 4 C 1.53001 * 109.47385 * 119.99883 * 2 1 3 5 5 C 1.52998 * 109.47385 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47033 * 300.00363 * 5 4 2 7 7 H 1.09000 * 109.47199 * 299.99422 * 6 5 4 8 8 C 1.50702 * 109.47168 * 179.97438 * 6 5 4 9 9 O 1.21286 * 119.99561 * 335.32552 * 8 6 5 10 10 N 1.34774 * 120.00579 * 155.32971 * 8 6 5 11 11 C 1.46931 * 120.62602 * 355.32723 * 10 8 6 12 12 C 1.53193 * 108.77603 * 126.36992 * 11 10 8 13 13 C 1.53045 * 109.30929 * 54.63203 * 12 11 10 14 14 H 1.09003 * 109.44813 * 58.65089 * 13 12 11 15 15 C 1.52996 * 109.45687 * 178.61058 * 13 12 11 16 16 N 1.46503 * 109.47519 * 295.07338 * 15 13 12 17 17 C 1.36936 * 119.99654 * 179.97438 * 16 15 13 18 18 H 1.07992 * 120.00709 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99549 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00235 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00062 * 180.27692 * 19 17 16 22 22 H 1.48503 * 109.47435 * 179.72764 * 21 19 17 23 23 H 1.48498 * 109.47157 * 299.72663 * 21 19 17 24 24 H 1.48502 * 109.47215 * 59.72694 * 21 19 17 25 25 C 1.53030 * 109.54204 * 298.63728 * 13 12 11 26 26 H 1.09008 * 109.49558 * 301.41215 * 25 13 12 27 27 C 1.53002 * 109.49986 * 181.31879 * 25 13 12 28 28 C 1.46918 * 120.63476 * 175.30514 * 10 8 6 29 29 C 1.53007 * 109.47390 * 59.99924 * 6 5 4 30 30 C 1.52995 * 109.47033 * 240.00246 * 2 1 3 31 31 H 1.09001 * 109.47468 * 299.99969 * 1 2 3 32 32 H 1.09001 * 109.47125 * 59.99803 * 1 2 3 33 33 H 1.08999 * 109.47154 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.46749 * 60.00029 * 4 2 1 35 35 H 1.09001 * 109.46939 * 300.00472 * 4 2 1 36 36 H 1.08996 * 109.47531 * 180.02562 * 5 4 2 37 37 H 1.09000 * 109.46657 * 60.00117 * 5 4 2 38 38 H 1.09005 * 109.58608 * 246.15973 * 11 10 8 39 39 H 1.09006 * 109.58451 * 6.57913 * 11 10 8 40 40 H 1.09000 * 109.49816 * 294.68503 * 12 11 10 41 41 H 1.08993 * 109.49491 * 174.58120 * 12 11 10 42 42 H 1.08997 * 109.47155 * 175.06767 * 15 13 12 43 43 H 1.09006 * 109.46819 * 55.07325 * 15 13 12 44 44 H 0.96992 * 119.99572 * 359.97438 * 16 15 13 45 45 H 0.96999 * 119.99992 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.46975 * 59.99862 * 27 25 13 47 47 H 1.09000 * 109.47238 * 179.97438 * 27 25 13 48 48 H 1.08994 * 109.47003 * 299.99896 * 27 25 13 49 49 H 1.09004 * 109.58758 * 113.84347 * 28 10 8 50 50 H 1.08996 * 109.70666 * 353.48838 * 28 10 8 51 51 H 1.08999 * 109.46981 * 59.99974 * 29 6 5 52 52 H 1.09001 * 109.46996 * 179.97438 * 29 6 5 53 53 H 1.09000 * 109.47199 * 299.99422 * 30 2 1 54 54 H 1.09001 * 109.47205 * 60.00000 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7207 1.2496 6 6 4.0805 -1.4415 0.0003 7 1 3.7176 -2.4693 0.0001 8 6 5.5875 -1.4404 0.0003 9 8 6.1933 -0.5830 0.6077 10 7 6.2622 -2.3920 -0.6747 11 6 5.5460 -3.4950 -1.3299 12 6 5.9713 -3.5544 -2.8004 13 6 7.4961 -3.6583 -2.8825 14 1 7.8283 -4.5493 -2.3497 15 6 7.9223 -3.7527 -4.3488 16 7 7.4156 -5.0006 -4.9253 17 6 7.6739 -5.3039 -6.2355 18 1 8.2507 -4.6231 -6.8439 19 6 7.1943 -6.4865 -6.7816 20 7 6.4909 -7.3161 -6.0403 21 14 7.5531 -6.9041 -8.5666 22 1 6.9399 -8.2145 -8.9014 23 1 6.9827 -5.8518 -9.4454 24 1 9.0220 -6.9780 -8.7721 25 6 8.1285 -2.4184 -2.2464 26 1 7.7771 -1.5251 -2.7630 27 6 9.6518 -2.5077 -2.3583 28 6 7.7276 -2.3460 -0.7697 29 6 3.5705 -0.7202 -1.2490 30 6 2.0399 -0.7212 -1.2492 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6767 -1.7489 1.2492 35 1 1.6766 -0.2074 2.1392 36 1 3.9334 -1.2348 2.1393 37 1 3.9329 0.3072 1.2498 38 1 5.7958 -4.4357 -0.8390 39 1 4.4717 -3.3217 -1.2669 40 1 5.6403 -2.6505 -3.3117 41 1 5.5213 -4.4267 -3.2743 42 1 9.0103 -3.7384 -4.4126 43 1 7.5149 -2.9057 -4.9009 44 1 6.8973 -5.6118 -4.3790 45 1 6.1561 -8.1427 -6.4218 46 1 9.9364 -2.5620 -3.4091 47 1 10.1018 -1.6242 -1.9055 48 1 10.0024 -3.4003 -1.8403 49 1 8.1553 -3.1930 -0.2331 50 1 8.0949 -1.4158 -0.3364 51 1 3.9335 0.3076 -1.2487 52 1 3.9346 -1.2335 -2.1389 53 1 1.6767 -1.7489 -1.2492 54 1 1.6766 -0.2073 -2.1392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185535857.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:41 Heat of formation + Delta-G solvation = -81.490218 kcal Electronic energy + Delta-G solvation = -28804.589715 eV Core-core repulsion = 25159.920541 eV Total energy + Delta-G solvation = -3644.669175 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.70406 -39.78350 -38.63462 -36.55435 -35.08465 -33.78228 -33.20831 -31.98455 -31.70012 -28.66211 -28.30163 -26.96280 -25.49791 -23.88577 -23.60684 -23.06220 -22.46213 -21.08940 -20.71433 -19.78101 -19.13038 -18.11524 -17.21660 -16.74932 -16.33528 -15.86833 -15.78912 -15.53380 -15.28731 -15.16926 -15.14934 -15.13205 -14.53221 -14.23061 -14.13525 -13.87963 -13.80127 -13.53486 -13.13608 -13.12835 -13.08605 -12.93639 -12.90453 -12.75774 -12.65158 -12.32651 -12.22064 -12.03411 -11.97190 -11.89747 -11.84208 -11.64297 -11.59767 -11.44886 -11.19341 -11.18226 -10.93117 -10.87582 -10.54160 -9.64443 -8.94856 -7.93164 -5.20570 1.48223 1.50317 1.56468 1.57125 1.99614 2.57382 3.40096 3.41607 3.68070 3.69757 3.72347 3.77649 3.85260 4.01139 4.07885 4.14755 4.20546 4.23660 4.33645 4.36571 4.46961 4.52335 4.53141 4.57768 4.62297 4.63463 4.66929 4.75439 4.79941 4.84125 4.86232 4.93099 4.98413 5.02054 5.04654 5.09469 5.10260 5.15534 5.19446 5.19922 5.26676 5.29159 5.33771 5.36204 5.43567 5.45212 5.48899 5.54331 5.61277 5.62502 6.29717 6.40217 7.14097 7.36577 8.13011 8.37499 9.29923 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013997 B = 0.002948 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.905574 B = 9494.301783 C =10983.876926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.062 0.938 4 C -0.107 4.107 5 C -0.097 4.097 6 C -0.102 4.102 7 H 0.111 0.889 8 C 0.516 3.484 9 O -0.585 6.585 10 N -0.607 5.607 11 C 0.109 3.891 12 C -0.119 4.119 13 C -0.078 4.078 14 H 0.067 0.933 15 C 0.157 3.843 16 N -0.741 5.741 17 C -0.245 4.245 18 H 0.070 0.930 19 C -0.072 4.072 20 N -0.966 5.966 21 Si 0.969 3.031 22 H -0.294 1.294 23 H -0.279 1.279 24 H -0.280 1.280 25 C -0.086 4.086 26 H 0.064 0.936 27 C -0.144 4.144 28 C 0.120 3.880 29 C -0.104 4.104 30 C -0.109 4.109 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.025 0.975 43 H 0.010 0.990 44 H 0.376 0.624 45 H 0.251 0.749 46 H 0.056 0.944 47 H 0.067 0.933 48 H 0.060 0.940 49 H 0.075 0.925 50 H 0.081 0.919 51 H 0.054 0.946 52 H 0.066 0.934 53 H 0.074 0.926 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.863 13.313 15.600 22.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.081 0.919 4 C -0.145 4.145 5 C -0.135 4.135 6 C -0.123 4.123 7 H 0.129 0.871 8 C 0.306 3.694 9 O -0.465 6.465 10 N -0.339 5.339 11 C -0.013 4.013 12 C -0.157 4.157 13 C -0.097 4.097 14 H 0.086 0.914 15 C 0.031 3.969 16 N -0.384 5.384 17 C -0.377 4.377 18 H 0.088 0.912 19 C -0.264 4.264 20 N -0.617 5.617 21 Si 0.798 3.202 22 H -0.220 1.220 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.106 4.106 26 H 0.083 0.917 27 C -0.202 4.202 28 C -0.003 4.003 29 C -0.142 4.142 30 C -0.146 4.146 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.125 0.875 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.042 0.958 43 H 0.028 0.972 44 H 0.209 0.791 45 H 0.060 0.940 46 H 0.075 0.925 47 H 0.086 0.914 48 H 0.079 0.921 49 H 0.094 0.906 50 H 0.099 0.901 51 H 0.073 0.927 52 H 0.084 0.916 53 H 0.093 0.907 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.467 13.784 15.754 22.580 hybrid contribution 0.345 -0.670 -1.097 1.331 sum -8.122 13.114 14.657 21.278 Atomic orbital electron populations 1.21803 0.94267 1.02218 1.01930 1.21157 0.96128 0.99295 0.94644 0.91932 1.21581 0.93328 1.01536 0.98043 1.21336 0.96475 1.00279 0.95436 1.21421 0.89236 1.03109 0.98507 0.87139 1.21226 0.91223 0.79820 0.77172 1.90637 1.71406 1.39213 1.45280 1.48252 1.07386 1.25996 1.52233 1.21954 0.97938 0.89398 0.91966 1.21816 0.95553 1.02299 0.96032 1.21212 0.95522 0.98006 0.94988 0.91419 1.20873 0.96154 0.87640 0.92250 1.42529 1.64643 1.21423 1.09774 1.19549 1.26860 1.02400 0.88921 0.91184 1.25479 1.01373 0.97538 1.02018 1.69784 1.42422 1.12459 1.37003 0.85282 0.77660 0.76784 0.80456 1.22039 1.20568 1.20649 1.21337 0.96689 0.97484 0.95050 0.91726 1.21803 0.93639 1.02425 1.02330 1.21628 0.79677 1.03026 0.95957 1.21455 0.97261 1.00032 0.95491 1.21588 0.93114 1.01728 0.98170 0.92290 0.92586 0.92225 0.90858 0.90969 0.92181 0.92662 0.90190 0.87454 0.92195 0.91401 0.95768 0.97199 0.79142 0.93986 0.92472 0.91363 0.92081 0.90640 0.90052 0.92708 0.91569 0.90732 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.19 71.98 0.66 -0.95 16 2 C -0.09 -1.26 2.72 -10.80 -0.03 -1.29 16 3 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.11 -1.44 5.20 30.59 0.16 -1.28 16 5 C -0.10 -1.78 4.73 30.59 0.14 -1.63 16 6 C -0.10 -1.93 1.69 -11.54 -0.02 -1.95 16 7 H 0.11 1.71 6.29 -2.39 -0.02 1.69 16 8 C 0.52 13.21 6.80 87.66 0.60 13.80 16 9 O -0.58 -19.15 15.53 -3.05 -0.05 -19.19 16 10 N -0.61 -14.55 2.97 -818.89 -2.43 -16.99 16 11 C 0.11 2.36 6.23 86.36 0.54 2.90 16 12 C -0.12 -3.31 5.25 30.67 0.16 -3.14 16 13 C -0.08 -2.36 1.73 -10.77 -0.02 -2.38 16 14 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 15 C 0.16 6.12 5.41 86.38 0.47 6.58 16 16 N -0.74 -36.60 5.32 -343.46 -1.83 -38.42 16 17 C -0.25 -13.57 9.99 84.03 0.84 -12.73 16 18 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 19 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 20 N -0.97 -57.75 13.06 21.65 0.28 -57.47 16 21 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 22 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 25 C -0.09 -2.19 2.41 -10.72 -0.03 -2.22 16 26 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 27 C -0.14 -3.39 8.82 71.98 0.63 -2.75 16 28 C 0.12 2.91 5.70 86.36 0.49 3.41 16 29 C -0.10 -1.90 5.07 30.62 0.16 -1.74 16 30 C -0.11 -1.56 5.21 30.61 0.16 -1.40 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.05 1.21 7.87 -2.39 -0.02 1.19 16 38 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.11 1.85 5.20 -2.38 -0.01 1.84 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.07 2.21 7.15 -2.39 -0.02 2.20 16 42 H 0.02 0.96 6.14 -2.39 -0.01 0.94 16 43 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 44 H 0.38 19.43 6.84 -92.71 -0.63 18.79 16 45 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 46 H 0.06 1.47 6.30 -2.38 -0.02 1.46 16 47 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.08 2.14 7.04 -2.39 -0.02 2.13 16 51 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 52 H 0.07 1.27 7.90 -2.39 -0.02 1.25 16 53 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 54 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -66.14 402.84 3.60 -62.54 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: 0.21 Total: 32.21 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: 5.38 Total: -10.35 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -3.98 Total: -112.88 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.05 Total: -19.19 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -66.14 3.60 -62.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185535857.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.949 kcal (2) G-P(sol) polarization free energy of solvation -66.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds