Wall clock time and date at job start Tue Mar 31 2020 15:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47128 * 2 1 4 4 C 1.52999 * 109.47296 * 120.00308 * 2 1 3 5 5 C 1.53001 * 109.47142 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47095 * 299.99976 * 5 4 2 7 7 H 1.09002 * 109.47032 * 299.99818 * 6 5 4 8 8 C 1.50703 * 109.47407 * 179.97438 * 6 5 4 9 9 O 1.21273 * 119.99827 * 274.69395 * 8 6 5 10 10 N 1.34777 * 119.99669 * 94.68816 * 8 6 5 11 11 C 1.46921 * 120.63548 * 354.59581 * 10 8 6 12 12 C 1.53188 * 108.77521 * 233.63107 * 11 10 8 13 13 C 1.53049 * 109.30933 * 305.35901 * 12 11 10 14 14 H 1.08994 * 109.45795 * 301.34635 * 13 12 11 15 15 C 1.52996 * 109.45704 * 181.38652 * 13 12 11 16 16 N 1.46502 * 109.47321 * 65.00635 * 15 13 12 17 17 C 1.36940 * 120.00165 * 179.97438 * 16 15 13 18 18 H 1.07996 * 119.99780 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00000 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99954 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00009 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47024 * 89.99852 * 21 19 17 23 23 H 1.48500 * 109.47256 * 210.00022 * 21 19 17 24 24 H 1.48497 * 109.47150 * 330.00161 * 21 19 17 25 25 C 1.53040 * 109.53770 * 61.36891 * 13 12 11 26 26 H 1.09001 * 109.52458 * 178.66680 * 25 13 12 27 27 C 1.52994 * 109.49871 * 58.58361 * 25 13 12 28 28 C 1.46931 * 120.62806 * 174.60900 * 10 8 6 29 29 C 1.52996 * 109.47344 * 59.99726 * 6 5 4 30 30 C 1.52999 * 109.47402 * 300.00537 * 29 6 5 31 31 H 1.09002 * 109.46663 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46847 * 299.99417 * 1 2 3 33 33 H 1.08992 * 109.47429 * 59.99742 * 1 2 3 34 34 H 1.09001 * 109.47397 * 299.99938 * 4 2 1 35 35 H 1.08992 * 109.47320 * 60.00217 * 4 2 1 36 36 H 1.09001 * 109.47324 * 179.97438 * 5 4 2 37 37 H 1.09004 * 109.47497 * 59.99561 * 5 4 2 38 38 H 1.09001 * 109.59355 * 113.83726 * 11 10 8 39 39 H 1.09005 * 109.58635 * 353.41429 * 11 10 8 40 40 H 1.09000 * 109.50542 * 65.31228 * 12 11 10 41 41 H 1.08999 * 109.50093 * 185.41394 * 12 11 10 42 42 H 1.09005 * 109.47150 * 184.99669 * 15 13 12 43 43 H 1.08999 * 109.47612 * 305.00032 * 15 13 12 44 44 H 0.96999 * 119.99597 * 359.97438 * 16 15 13 45 45 H 0.97004 * 120.00146 * 180.02562 * 20 19 17 46 46 H 1.09005 * 109.47395 * 300.16403 * 27 25 13 47 47 H 1.08998 * 109.47049 * 60.15976 * 27 25 13 48 48 H 1.09003 * 109.47290 * 180.16407 * 27 25 13 49 49 H 1.08992 * 109.58881 * 246.16186 * 28 10 8 50 50 H 1.09005 * 109.58221 * 6.44511 * 28 10 8 51 51 H 1.09002 * 109.46981 * 60.00060 * 29 6 5 52 52 H 1.09001 * 109.47636 * 180.02562 * 29 6 5 53 53 H 1.09001 * 109.47478 * 179.97438 * 30 29 6 54 54 H 1.09002 * 109.46663 * 299.99718 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 4.0805 -1.4415 0.0002 7 1 3.7176 -2.4694 -0.0001 8 6 5.5876 -1.4405 0.0001 9 8 6.1932 -0.4905 -0.4489 10 7 6.2622 -2.4952 0.4990 11 6 5.5474 -3.5998 1.1529 12 6 6.1505 -3.8229 2.5432 13 6 7.6595 -4.0417 2.4110 14 1 7.8468 -4.9017 1.7682 15 6 8.2602 -4.2993 3.7944 16 7 7.7318 -5.5563 4.3299 17 6 8.1303 -5.9961 5.5641 18 1 8.8345 -5.4164 6.1423 19 6 7.6292 -7.1869 6.0717 20 7 6.7714 -7.8935 5.3667 21 14 8.1723 -7.7864 7.7555 22 1 7.2559 -7.2472 8.7922 23 1 8.1374 -9.2706 7.7874 24 1 9.5553 -7.3178 8.0254 25 6 8.3055 -2.7969 1.7985 26 1 9.3831 -2.9437 1.7263 27 6 8.0136 -1.5826 2.6823 28 6 7.7266 -2.5621 0.3997 29 6 3.5705 -0.7203 -1.2490 30 6 2.0405 -0.7208 -1.2493 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.6767 -0.2076 2.1392 35 1 1.6768 -1.7489 1.2492 36 1 3.9334 -1.2342 2.1396 37 1 3.9331 0.3071 1.2497 38 1 5.6542 -4.5070 0.5583 39 1 4.4917 -3.3457 1.2491 40 1 5.9629 -2.9482 3.1660 41 1 5.6945 -4.7006 3.0011 42 1 9.3451 -4.3669 3.7125 43 1 7.9967 -3.4800 4.4633 44 1 7.0996 -6.0771 3.8103 45 1 6.4209 -8.7255 5.7216 46 1 6.9358 -1.4368 2.7551 47 1 8.4256 -1.7502 3.6774 48 1 8.4714 -0.6957 2.2441 49 1 8.0111 -3.3846 -0.2564 50 1 8.1086 -1.6241 -0.0035 51 1 3.9334 0.3075 -1.2488 52 1 3.9338 -1.2341 -2.1391 53 1 1.6771 -0.2066 -2.1390 54 1 1.6776 -1.7486 -1.2495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185535858.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:49 Heat of formation + Delta-G solvation = -78.282215 kcal Electronic energy + Delta-G solvation = -28979.813497 eV Core-core repulsion = 25335.283432 eV Total energy + Delta-G solvation = -3644.530065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -41.76086 -39.87500 -38.60682 -36.54427 -34.92227 -33.76101 -32.97532 -31.93749 -31.71347 -28.59369 -28.46133 -27.05983 -25.46260 -24.16461 -23.61881 -23.43175 -22.44673 -20.97060 -20.39159 -19.54833 -18.91018 -18.17908 -17.06616 -16.80226 -16.37259 -16.06881 -15.69641 -15.46752 -15.34309 -15.18267 -15.15555 -15.03614 -14.69055 -14.43961 -14.00136 -13.93028 -13.70939 -13.52467 -13.42603 -13.13147 -13.09544 -12.97114 -12.80759 -12.68390 -12.46384 -12.29987 -12.19412 -12.05295 -12.02056 -11.90821 -11.80225 -11.61370 -11.54890 -11.38453 -11.22728 -11.17020 -10.93118 -10.88583 -10.50240 -9.59598 -8.95471 -7.93631 -5.20995 1.48104 1.48873 1.57304 1.60875 2.02718 2.57008 3.39822 3.43008 3.69835 3.71924 3.74844 3.76616 3.84607 4.06322 4.10257 4.15697 4.21621 4.23756 4.33439 4.36692 4.47011 4.49204 4.53158 4.58130 4.61381 4.65865 4.73254 4.75775 4.81825 4.85182 4.86871 4.93139 4.98135 5.01825 5.05105 5.06350 5.12418 5.18275 5.19028 5.20713 5.22863 5.26780 5.29652 5.36634 5.43782 5.45138 5.50578 5.55081 5.61895 5.65035 6.29506 6.43767 7.18107 7.36306 8.12778 8.37205 9.29648 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.002850 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.941239 B = 9822.069290 C =10953.563070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.062 0.938 4 C -0.108 4.108 5 C -0.104 4.104 6 C -0.102 4.102 7 H 0.109 0.891 8 C 0.517 3.483 9 O -0.584 6.584 10 N -0.604 5.604 11 C 0.110 3.890 12 C -0.120 4.120 13 C -0.077 4.077 14 H 0.068 0.932 15 C 0.159 3.841 16 N -0.741 5.741 17 C -0.244 4.244 18 H 0.070 0.930 19 C -0.072 4.072 20 N -0.966 5.966 21 Si 0.969 3.031 22 H -0.287 1.287 23 H -0.295 1.295 24 H -0.273 1.273 25 C -0.090 4.090 26 H 0.088 0.912 27 C -0.138 4.138 28 C 0.118 3.882 29 C -0.098 4.098 30 C -0.107 4.107 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.105 0.895 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.013 0.987 43 H 0.019 0.981 44 H 0.376 0.624 45 H 0.251 0.749 46 H 0.048 0.952 47 H 0.053 0.947 48 H 0.053 0.947 49 H 0.078 0.922 50 H 0.082 0.918 51 H 0.055 0.945 52 H 0.060 0.940 53 H 0.072 0.928 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.424 15.019 -14.326 23.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.080 0.920 4 C -0.146 4.146 5 C -0.142 4.142 6 C -0.123 4.123 7 H 0.127 0.873 8 C 0.307 3.693 9 O -0.464 6.464 10 N -0.335 5.335 11 C -0.012 4.012 12 C -0.158 4.158 13 C -0.096 4.096 14 H 0.086 0.914 15 C 0.033 3.967 16 N -0.384 5.384 17 C -0.376 4.376 18 H 0.088 0.912 19 C -0.265 4.265 20 N -0.617 5.617 21 Si 0.798 3.202 22 H -0.214 1.214 23 H -0.221 1.221 24 H -0.198 1.198 25 C -0.109 4.109 26 H 0.107 0.893 27 C -0.195 4.195 28 C -0.005 4.005 29 C -0.136 4.136 30 C -0.145 4.145 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.124 0.876 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.031 0.969 43 H 0.037 0.963 44 H 0.209 0.791 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.096 0.904 50 H 0.100 0.900 51 H 0.074 0.926 52 H 0.079 0.921 53 H 0.090 0.910 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.991 15.523 -14.406 23.416 hybrid contribution 0.453 -0.779 1.011 1.354 sum -9.538 14.745 -13.395 22.086 Atomic orbital electron populations 1.21802 0.94267 1.02213 1.01931 1.21156 0.96118 0.99290 0.94661 0.91957 1.21576 0.93139 1.01703 0.98171 1.21434 0.97232 1.00053 0.95494 1.21430 0.89391 1.03056 0.98473 0.87312 1.21168 0.91091 0.80972 0.76061 1.90632 1.71343 1.35319 1.49120 1.48204 1.07358 1.20831 1.57148 1.21920 0.97155 0.89500 0.92644 1.21841 0.95242 1.01995 0.96737 1.21170 0.95378 0.97443 0.95643 0.91387 1.20830 0.95266 0.87410 0.93216 1.42548 1.53593 1.23621 1.18659 1.19585 1.20057 1.03243 0.94748 0.91195 1.25479 1.00538 0.98246 1.02190 1.69790 1.36023 1.16497 1.39343 0.85209 0.78014 0.76841 0.80112 1.21431 1.22110 1.19805 1.21390 1.00479 0.94526 0.94543 0.89340 1.21780 1.01301 0.96992 0.99432 1.21633 0.79584 1.02812 0.96457 1.21354 0.96604 1.00270 0.95399 1.21576 0.93309 1.01533 0.98050 0.92228 0.92560 0.92317 0.91181 0.90753 0.91697 0.92702 0.90112 0.87646 0.91894 0.91612 0.96912 0.96342 0.79116 0.93991 0.93293 0.92815 0.92818 0.90359 0.89981 0.92606 0.92108 0.90968 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.19 71.98 0.66 -0.90 16 2 C -0.09 -1.23 2.72 -10.79 -0.03 -1.26 16 3 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.11 -1.51 5.20 30.59 0.16 -1.35 16 5 C -0.10 -1.86 5.10 30.59 0.16 -1.70 16 6 C -0.10 -1.91 1.72 -11.54 -0.02 -1.93 16 7 H 0.11 1.65 6.19 -2.39 -0.01 1.64 16 8 C 0.52 12.93 6.69 87.66 0.59 13.52 16 9 O -0.58 -18.78 15.68 -3.01 -0.05 -18.83 16 10 N -0.60 -14.04 2.41 -818.91 -1.97 -16.02 16 11 C 0.11 2.33 6.15 86.36 0.53 2.86 16 12 C -0.12 -3.33 4.91 30.67 0.15 -3.17 16 13 C -0.08 -2.32 1.96 -10.77 -0.02 -2.34 16 14 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 15 C 0.16 6.20 5.18 86.38 0.45 6.64 16 16 N -0.74 -36.68 5.32 -343.45 -1.83 -38.50 16 17 C -0.24 -13.54 9.99 84.03 0.84 -12.71 16 18 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 19 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 20 N -0.97 -57.79 13.06 21.65 0.28 -57.51 16 21 Si 0.97 45.76 29.55 68.60 2.03 47.79 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 25 C -0.09 -2.27 2.72 -10.72 -0.03 -2.30 16 26 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 27 C -0.14 -3.60 8.38 71.98 0.60 -3.00 16 28 C 0.12 2.79 5.84 86.36 0.50 3.30 16 29 C -0.10 -1.75 4.86 30.59 0.15 -1.60 16 30 C -0.11 -1.40 5.20 30.59 0.16 -1.25 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 1.21 8.02 -2.39 -0.02 1.19 16 37 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.11 1.81 5.43 -2.38 -0.01 1.80 16 40 H 0.06 1.80 6.33 -2.39 -0.02 1.79 16 41 H 0.07 2.15 7.15 -2.39 -0.02 2.13 16 42 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 43 H 0.02 0.74 6.74 -2.39 -0.02 0.73 16 44 H 0.38 19.44 6.85 -92.71 -0.63 18.81 16 45 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 46 H 0.05 1.33 5.97 -2.38 -0.01 1.32 16 47 H 0.05 1.47 6.59 -2.39 -0.02 1.45 16 48 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.08 2.12 7.00 -2.38 -0.02 2.10 16 51 H 0.06 1.20 7.85 -2.39 -0.02 1.18 16 52 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 53 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 54 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -66.11 399.19 4.00 -62.11 By element: Atomic # 1 Polarization: 31.52 SS G_CDS: 0.22 Total: 31.75 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 5.31 Total: -10.79 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -3.52 Total: -112.03 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.05 Total: -18.83 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -66.11 4.00 -62.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185535858.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.169 kcal (2) G-P(sol) polarization free energy of solvation -66.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds