Wall clock time and date at job start Tue Mar 31 2020 15:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47301 * 2 1 4 4 C 1.53001 * 109.46753 * 119.99042 * 2 1 3 5 5 C 1.53005 * 109.47259 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47133 * 300.00446 * 5 4 2 7 7 H 1.09000 * 109.46885 * 299.99624 * 6 5 4 8 8 C 1.50696 * 109.47269 * 179.97438 * 6 5 4 9 9 O 1.21278 * 120.00019 * 264.59704 * 8 6 5 10 10 N 1.34782 * 119.99876 * 84.59283 * 8 6 5 11 11 C 1.46923 * 120.62676 * 174.77063 * 10 8 6 12 12 C 1.53196 * 108.77545 * 233.63249 * 11 10 8 13 13 C 1.53046 * 109.31149 * 305.37111 * 12 11 10 14 14 H 1.09004 * 109.45636 * 301.35566 * 13 12 11 15 15 C 1.53002 * 109.45972 * 181.38530 * 13 12 11 16 16 N 1.46503 * 109.47249 * 64.99826 * 15 13 12 17 17 C 1.36936 * 119.99789 * 180.02562 * 16 15 13 18 18 H 1.07994 * 119.99802 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99840 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99693 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99906 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47415 * 60.00404 * 21 19 17 23 23 H 1.48507 * 109.47131 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47242 * 300.00363 * 21 19 17 25 25 C 1.53350 * 109.60940 * 61.36568 * 13 12 11 26 26 H 1.09002 * 109.46694 * 58.55561 * 25 13 12 27 27 C 1.53005 * 109.67998 * 178.74670 * 25 13 12 28 28 C 1.46924 * 120.63103 * 354.79535 * 10 8 6 29 29 C 1.53004 * 109.47152 * 59.99388 * 6 5 4 30 30 C 1.52994 * 109.47095 * 300.00341 * 29 6 5 31 31 H 1.09005 * 109.47211 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47660 * 300.00977 * 1 2 3 33 33 H 1.09004 * 109.46805 * 60.00758 * 1 2 3 34 34 H 1.08997 * 109.47712 * 300.00342 * 4 2 1 35 35 H 1.08999 * 109.47302 * 60.00691 * 4 2 1 36 36 H 1.08990 * 109.47492 * 180.02562 * 5 4 2 37 37 H 1.09000 * 109.46928 * 60.00044 * 5 4 2 38 38 H 1.09002 * 109.59328 * 353.41713 * 11 10 8 39 39 H 1.08996 * 109.58975 * 113.84623 * 11 10 8 40 40 H 1.09008 * 109.49756 * 65.31191 * 12 11 10 41 41 H 1.08998 * 109.50607 * 185.41531 * 12 11 10 42 42 H 1.09007 * 109.46565 * 184.99530 * 15 13 12 43 43 H 1.09001 * 109.46924 * 304.99324 * 15 13 12 44 44 H 0.97002 * 119.99895 * 359.97438 * 16 15 13 45 45 H 0.97004 * 119.99139 * 179.97438 * 20 19 17 46 46 H 1.09005 * 109.46412 * 179.75653 * 27 25 13 47 47 H 1.08993 * 109.47370 * 299.75769 * 27 25 13 48 48 H 1.09002 * 109.46858 * 59.75986 * 27 25 13 49 49 H 1.09002 * 109.58691 * 246.15547 * 28 10 8 50 50 H 1.08999 * 109.58793 * 6.43579 * 28 10 8 51 51 H 1.09005 * 109.46620 * 60.00127 * 29 6 5 52 52 H 1.09002 * 109.46762 * 179.97438 * 29 6 5 53 53 H 1.09004 * 109.46805 * 179.97438 * 30 29 6 54 54 H 1.08997 * 109.47301 * 299.99151 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5699 -0.7206 1.2498 6 6 4.0805 -1.4416 0.0007 7 1 3.7175 -2.4694 0.0006 8 6 5.5875 -1.4406 0.0007 9 8 6.1933 -0.5841 -0.6078 10 7 6.2620 -2.3914 0.6772 11 6 7.7266 -2.4725 0.5942 12 6 8.1191 -3.8941 0.1796 13 6 7.4878 -4.8964 1.1488 14 1 7.8269 -4.6840 2.1627 15 6 7.9058 -6.3155 0.7583 16 7 9.3526 -6.4644 0.9344 17 6 9.9583 -7.6578 0.6448 18 1 9.3694 -8.4894 0.2870 19 6 11.3292 -7.7988 0.8111 20 7 12.0467 -6.7853 1.2476 21 14 12.1554 -9.4270 0.4167 22 1 11.9311 -9.7626 -1.0124 23 1 13.6134 -9.3182 0.6771 24 1 11.5785 -10.4949 1.2724 25 6 5.9600 -4.7796 1.0872 26 1 5.6221 -4.9673 0.0680 27 6 5.3266 -5.8025 2.0325 28 6 5.5465 -3.3669 1.5110 29 6 3.5705 -0.7205 -1.2487 30 6 2.0406 -0.7211 -1.2490 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5140 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 1.6765 -0.2072 2.1393 35 1 1.6766 -1.7487 1.2495 36 1 3.9332 -1.2346 2.1396 37 1 3.9329 0.3072 1.2499 38 1 8.0906 -1.7619 -0.1480 39 1 8.1610 -2.2426 1.5670 40 1 7.7608 -4.0904 -0.8310 41 1 9.2040 -3.9949 0.2075 42 1 7.3867 -7.0345 1.3923 43 1 7.6461 -6.4967 -0.2847 44 1 9.8815 -5.7173 1.2554 45 1 13.0047 -6.8840 1.3642 46 1 4.2410 -5.7135 1.9892 47 1 5.6211 -6.8075 1.7305 48 1 5.6662 -5.6149 3.0511 49 1 5.8031 -3.2099 2.5587 50 1 4.4719 -3.2447 1.3758 51 1 3.9335 0.3073 -1.2485 52 1 3.9347 -1.2340 -2.1386 53 1 1.6773 -0.2069 -2.1389 54 1 1.6776 -1.7488 -1.2493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185535860.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:09 Heat of formation + Delta-G solvation = -82.875390 kcal Electronic energy + Delta-G solvation = -28669.609112 eV Core-core repulsion = 25024.879872 eV Total energy + Delta-G solvation = -3644.729240 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 5.23 seconds Orbital eigenvalues (eV) -41.70165 -39.75936 -38.64889 -36.58554 -34.80877 -34.02822 -33.21578 -32.11727 -31.63383 -28.71747 -27.54790 -27.51401 -25.51458 -24.11158 -23.60154 -22.77255 -22.38657 -21.11314 -20.61519 -19.95621 -19.15313 -18.09284 -17.20432 -16.74097 -16.46868 -15.87621 -15.63192 -15.51301 -15.29972 -15.18241 -15.17149 -14.96340 -14.60623 -14.34579 -14.13651 -13.80639 -13.73078 -13.52455 -13.14455 -13.12571 -13.09575 -12.96238 -12.83777 -12.74738 -12.63516 -12.32386 -12.23413 -12.00441 -11.97628 -11.90733 -11.80996 -11.61866 -11.57847 -11.38253 -11.30360 -11.15267 -10.91224 -10.88414 -10.53210 -9.64747 -8.97079 -7.94903 -5.22910 1.46126 1.49176 1.55298 1.58770 1.98590 2.55917 3.38240 3.42491 3.64899 3.70958 3.76424 3.81708 3.83530 3.99838 4.11732 4.17142 4.20869 4.26390 4.29182 4.36126 4.47326 4.53084 4.55470 4.59816 4.63477 4.65737 4.68420 4.76522 4.82831 4.86996 4.88438 4.96108 4.98827 5.03632 5.06710 5.10547 5.12739 5.16532 5.19319 5.23018 5.28278 5.28840 5.33271 5.45421 5.46334 5.46917 5.48061 5.55570 5.61483 5.64557 6.27639 6.43051 7.15131 7.33782 8.11558 8.34099 9.28423 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.027446 B = 0.002420 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.937271 B =11569.697660 C =11994.789790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.059 0.941 4 C -0.106 4.106 5 C -0.105 4.105 6 C -0.098 4.098 7 H 0.115 0.885 8 C 0.512 3.488 9 O -0.591 6.591 10 N -0.607 5.607 11 C 0.118 3.882 12 C -0.115 4.115 13 C -0.078 4.078 14 H 0.067 0.933 15 C 0.156 3.844 16 N -0.744 5.744 17 C -0.244 4.244 18 H 0.074 0.926 19 C -0.077 4.077 20 N -0.969 5.969 21 Si 0.973 3.027 22 H -0.280 1.280 23 H -0.296 1.296 24 H -0.276 1.276 25 C -0.091 4.091 26 H 0.072 0.928 27 C -0.143 4.143 28 C 0.111 3.889 29 C -0.100 4.100 30 C -0.107 4.107 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.032 0.968 43 H 0.009 0.991 44 H 0.373 0.627 45 H 0.251 0.749 46 H 0.083 0.917 47 H 0.051 0.949 48 H 0.059 0.941 49 H 0.083 0.917 50 H 0.117 0.883 51 H 0.052 0.948 52 H 0.051 0.949 53 H 0.066 0.934 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.230 12.198 1.537 29.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.078 0.922 4 C -0.144 4.144 5 C -0.143 4.143 6 C -0.119 4.119 7 H 0.133 0.867 8 C 0.302 3.698 9 O -0.472 6.472 10 N -0.338 5.338 11 C -0.005 4.005 12 C -0.153 4.153 13 C -0.097 4.097 14 H 0.085 0.915 15 C 0.030 3.970 16 N -0.387 5.387 17 C -0.376 4.376 18 H 0.092 0.908 19 C -0.270 4.270 20 N -0.620 5.620 21 Si 0.802 3.198 22 H -0.206 1.206 23 H -0.222 1.222 24 H -0.202 1.202 25 C -0.111 4.111 26 H 0.090 0.910 27 C -0.201 4.201 28 C -0.010 4.010 29 C -0.139 4.139 30 C -0.144 4.144 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.050 0.950 43 H 0.027 0.973 44 H 0.206 0.794 45 H 0.059 0.941 46 H 0.102 0.898 47 H 0.070 0.930 48 H 0.078 0.922 49 H 0.101 0.899 50 H 0.135 0.865 51 H 0.071 0.929 52 H 0.070 0.930 53 H 0.085 0.915 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -26.917 12.465 1.173 29.686 hybrid contribution 1.790 -0.547 -0.395 1.913 sum -25.127 11.918 0.778 27.821 Atomic orbital electron populations 1.21797 0.94192 1.02302 1.01866 1.21169 0.96164 0.99251 0.94815 0.92213 1.21575 0.92920 1.01957 0.97899 1.21510 0.97383 1.00063 0.95389 1.21412 0.88500 1.03265 0.98712 0.86734 1.21413 0.91511 0.79906 0.76977 1.90650 1.71592 1.38874 1.46045 1.48261 1.06911 1.31189 1.47478 1.21464 0.80473 0.96691 1.01909 1.21762 1.00441 0.94104 0.99002 1.21293 0.95957 0.93638 0.98834 0.91454 1.20915 0.83888 0.95297 0.96868 1.42601 1.03776 1.12467 1.79874 1.19588 0.91183 0.91451 1.35394 0.90833 1.25567 0.97187 1.01053 1.03145 1.69812 1.05848 1.32123 1.54228 0.85220 0.76938 0.79580 0.78077 1.20593 1.22211 1.20214 1.21475 0.93172 0.95476 1.00941 0.90974 1.21803 1.01451 0.97987 0.98847 1.22117 0.98199 0.86075 0.94657 1.21350 0.96752 1.00151 0.95606 1.21573 0.92977 1.01657 0.98230 0.92007 0.92284 0.92789 0.90612 0.90167 0.90228 0.92935 0.91079 0.90886 0.92971 0.92506 0.95008 0.97347 0.79433 0.94065 0.89814 0.92983 0.92178 0.89860 0.86473 0.92942 0.92974 0.91494 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.19 71.98 0.66 -0.54 16 2 C -0.10 -1.03 2.72 -10.80 -0.03 -1.06 16 3 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 4 C -0.11 -0.99 5.20 30.60 0.16 -0.83 16 5 C -0.11 -1.42 4.99 30.60 0.15 -1.27 16 6 C -0.10 -1.67 1.66 -11.54 -0.02 -1.69 16 7 H 0.11 1.46 6.53 -2.39 -0.02 1.45 16 8 C 0.51 13.23 6.80 87.66 0.60 13.82 16 9 O -0.59 -20.63 15.52 -3.02 -0.05 -20.67 16 10 N -0.61 -14.63 2.97 -818.93 -2.43 -17.06 16 11 C 0.12 3.41 6.42 86.36 0.55 3.96 16 12 C -0.11 -3.74 5.25 30.68 0.16 -3.58 16 13 C -0.08 -2.38 1.74 -10.66 -0.02 -2.40 16 14 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 15 C 0.16 6.12 5.41 86.38 0.47 6.58 16 16 N -0.74 -37.92 5.32 -343.44 -1.83 -39.75 16 17 C -0.24 -13.77 9.99 84.03 0.84 -12.93 16 18 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 19 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 20 N -0.97 -59.92 13.06 21.65 0.28 -59.64 16 21 Si 0.97 46.58 29.55 68.60 2.03 48.60 16 22 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 25 C -0.09 -1.93 2.43 -10.61 -0.03 -1.96 16 26 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 27 C -0.14 -2.57 8.83 71.98 0.64 -1.93 16 28 C 0.11 1.92 5.09 86.36 0.44 2.36 16 29 C -0.10 -1.83 4.73 30.59 0.14 -1.69 16 30 C -0.11 -1.32 5.20 30.59 0.16 -1.16 16 31 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.08 0.91 7.28 -2.39 -0.02 0.89 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 2.32 7.04 -2.39 -0.02 2.30 16 39 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 41 H 0.06 2.20 7.15 -2.39 -0.02 2.18 16 42 H 0.03 1.22 6.16 -2.38 -0.01 1.20 16 43 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.37 20.24 6.85 -92.71 -0.63 19.61 16 45 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 46 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 47 H 0.05 1.13 6.33 -2.39 -0.02 1.11 16 48 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.12 1.30 5.06 -2.39 -0.01 1.29 16 51 H 0.05 1.17 7.87 -2.38 -0.02 1.15 16 52 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 53 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 54 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -71.03 401.87 3.56 -67.46 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 0.22 Total: 29.39 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 5.35 Total: -8.33 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -3.98 Total: -116.45 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.05 Total: -20.67 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -71.03 3.56 -67.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185535860.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.412 kcal (2) G-P(sol) polarization free energy of solvation -71.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.23 seconds