Wall clock time and date at job start Tue Mar 31 2020 15:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47579 * 2 1 4 4 C 1.53003 * 109.47188 * 239.99286 * 2 1 3 5 5 C 1.52998 * 109.46888 * 180.02562 * 4 2 1 6 6 C 1.50703 * 109.47135 * 180.02562 * 5 4 2 7 7 O 1.21287 * 119.99238 * 335.32586 * 6 5 4 8 8 N 1.34772 * 120.00586 * 155.32683 * 6 5 4 9 9 C 1.46918 * 120.63511 * 175.30028 * 8 6 5 10 10 C 1.53191 * 108.77807 * 233.62902 * 9 8 6 11 11 C 1.53033 * 109.31256 * 305.36835 * 10 9 8 12 12 C 1.53004 * 109.46050 * 181.38607 * 11 10 9 13 13 N 1.46496 * 109.47171 * 174.99571 * 12 11 10 14 14 C 1.36935 * 120.00050 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00179 * 359.97438 * 14 13 12 16 16 C 1.38819 * 120.00103 * 180.02562 * 14 13 12 17 17 N 1.31613 * 119.99783 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99898 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47347 * 270.00039 * 18 16 14 20 20 H 1.48502 * 109.47300 * 30.00117 * 18 16 14 21 21 H 1.48502 * 109.46916 * 149.99809 * 18 16 14 22 22 C 1.53040 * 109.54090 * 61.36216 * 11 10 9 23 23 C 1.46931 * 120.62521 * 355.32082 * 8 6 5 24 24 C 1.52998 * 109.47143 * 60.00284 * 5 4 2 25 25 C 1.52996 * 109.47458 * 299.99661 * 24 5 4 26 26 H 1.08995 * 109.47490 * 180.02562 * 25 24 5 27 27 C 1.53009 * 109.46937 * 300.00298 * 25 24 5 28 28 C 1.52998 * 109.46820 * 119.99584 * 2 1 3 29 29 H 1.08992 * 109.47076 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47489 * 300.00583 * 1 2 3 31 31 H 1.08998 * 109.46824 * 60.00046 * 1 2 3 32 32 H 1.08998 * 109.46692 * 60.00587 * 4 2 1 33 33 H 1.08993 * 109.47081 * 300.00109 * 4 2 1 34 34 H 1.09003 * 109.47084 * 299.99899 * 5 4 2 35 35 H 1.08999 * 109.58706 * 113.84330 * 9 8 6 36 36 H 1.09004 * 109.58618 * 353.42055 * 9 8 6 37 37 H 1.08995 * 109.49765 * 185.40770 * 10 9 8 38 38 H 1.09004 * 109.52042 * 65.33349 * 10 9 8 39 39 H 1.09003 * 109.46016 * 301.35496 * 11 10 9 40 40 H 1.08997 * 109.47186 * 54.99210 * 12 11 10 41 41 H 1.08999 * 109.46702 * 294.99465 * 12 11 10 42 42 H 0.97003 * 120.00223 * 0.02562 * 13 12 11 43 43 H 0.97004 * 120.00610 * 359.97438 * 17 16 14 44 44 H 1.08993 * 109.49505 * 58.58979 * 22 11 10 45 45 H 1.09005 * 109.49379 * 178.68834 * 22 11 10 46 46 H 1.08997 * 109.58527 * 246.15173 * 23 8 6 47 47 H 1.08996 * 109.58681 * 6.58782 * 23 8 6 48 48 H 1.09002 * 109.47069 * 60.00216 * 24 5 4 49 49 H 1.09000 * 109.46885 * 179.97438 * 24 5 4 50 50 H 1.09004 * 109.46681 * 179.97438 * 27 25 24 51 51 H 1.08997 * 109.47120 * 299.99232 * 27 25 24 52 52 H 1.09001 * 109.46911 * 60.00065 * 27 25 24 53 53 H 1.09002 * 109.47577 * 299.99930 * 28 2 1 54 54 H 1.09003 * 109.47445 * 60.00006 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5700 -0.7219 -1.2488 6 6 4.0724 -1.4319 -2.4795 7 8 3.3744 -2.2561 -3.0314 8 7 5.2972 -1.1512 -2.9668 9 6 5.8421 -1.9066 -4.1030 10 6 7.2155 -2.4618 -3.7128 11 6 8.1081 -1.3144 -3.2348 12 6 9.4920 -1.8602 -2.8769 13 7 10.3818 -0.7482 -2.5338 14 6 11.6805 -0.9954 -2.1769 15 1 12.0487 -2.0103 -2.1479 16 6 12.5235 0.0583 -1.8513 17 7 12.0744 1.2950 -1.8851 18 14 14.2949 -0.2792 -1.3637 19 1 14.3756 -0.4719 0.1065 20 1 14.7723 -1.5061 -2.0507 21 1 15.1451 0.8723 -1.7594 22 6 7.4834 -0.6598 -2.0006 23 6 6.1131 -0.0840 -2.3714 24 6 4.0794 -1.4434 0.0005 25 6 3.5695 -0.7221 1.2497 26 1 3.9328 -1.2359 2.1397 27 6 4.0801 0.7203 1.2499 28 6 2.0399 -0.7212 1.2493 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6768 -0.2076 -2.1392 33 1 1.6767 -1.7490 -1.2490 34 1 3.9337 0.3056 -1.2487 35 1 5.9461 -1.2467 -4.9643 36 1 5.1717 -2.7299 -4.3496 37 1 7.6726 -2.9425 -4.5776 38 1 7.0992 -3.1907 -2.9107 39 1 8.2042 -0.5739 -4.0289 40 1 9.9003 -2.4026 -3.7296 41 1 9.4073 -2.5341 -2.0244 42 1 10.0508 0.1633 -2.5587 43 1 11.1544 1.4702 -2.1379 44 1 7.3642 -1.4053 -1.2145 45 1 8.1313 0.1423 -1.6469 46 1 6.2392 0.7244 -3.0916 47 1 5.6215 0.2951 -1.4755 48 1 3.7158 -2.4710 0.0003 49 1 5.1694 -1.4442 0.0005 50 1 3.7163 1.2343 2.1397 51 1 5.1700 0.7199 1.2502 52 1 3.7170 1.2343 0.3598 53 1 1.6766 -0.2073 2.1393 54 1 1.6766 -1.7489 1.2494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206958545.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:59 Heat of formation + Delta-G solvation = -80.882918 kcal Electronic energy + Delta-G solvation = -28986.517973 eV Core-core repulsion = 25341.875133 eV Total energy + Delta-G solvation = -3644.642840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.82324 -39.93069 -38.78026 -36.82909 -34.76350 -34.07006 -33.18055 -31.94941 -31.82746 -28.12486 -27.70651 -27.34265 -25.76198 -24.66020 -24.33746 -22.98424 -22.23380 -21.45518 -20.01016 -19.53002 -19.32760 -18.22505 -17.16084 -16.80539 -16.35604 -16.06244 -15.92600 -15.77064 -15.55196 -15.39433 -15.20221 -14.84382 -14.55744 -14.40440 -14.30944 -14.17311 -13.98643 -13.61370 -13.39750 -13.15560 -13.06936 -12.75506 -12.67981 -12.60178 -12.50869 -12.30463 -12.12617 -11.99994 -11.94865 -11.87115 -11.85053 -11.64730 -11.56110 -11.41940 -11.19225 -11.15240 -10.92884 -10.84425 -10.55915 -9.72098 -9.10076 -8.39760 -5.33188 1.53105 1.58507 1.68655 1.83166 1.94847 2.70567 3.35572 3.39257 3.61466 3.62887 3.69022 3.70806 3.80033 3.96933 4.06386 4.10931 4.13281 4.15828 4.25934 4.29924 4.31836 4.39721 4.44004 4.48815 4.55491 4.63414 4.72029 4.76107 4.77550 4.78647 4.81271 4.86385 4.92749 4.96351 4.98583 5.00034 5.01275 5.05809 5.14553 5.15066 5.20497 5.24324 5.28930 5.37683 5.41556 5.45288 5.47395 5.51885 5.58577 5.62911 6.34876 6.51240 7.09871 7.10461 8.00915 8.11815 9.12669 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.017487 B = 0.002806 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.781290 B = 9976.390159 C =11072.326339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.082 0.918 4 C -0.090 4.090 5 C -0.101 4.101 6 C 0.515 3.485 7 O -0.584 6.584 8 N -0.608 5.608 9 C 0.114 3.886 10 C -0.114 4.114 11 C -0.084 4.084 12 C 0.163 3.837 13 N -0.753 5.753 14 C -0.336 4.336 15 H 0.061 0.939 16 C -0.101 4.101 17 N -0.973 5.973 18 Si 1.128 2.872 19 H -0.284 1.284 20 H -0.276 1.276 21 H -0.291 1.291 22 C -0.117 4.117 23 C 0.110 3.890 24 C -0.100 4.100 25 C -0.086 4.086 26 H 0.077 0.923 27 C -0.154 4.154 28 C -0.107 4.107 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.111 0.889 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.015 0.985 41 H 0.012 0.988 42 H 0.363 0.637 43 H 0.246 0.754 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.106 0.894 48 H 0.055 0.945 49 H 0.063 0.937 50 H 0.064 0.936 51 H 0.051 0.949 52 H 0.064 0.936 53 H 0.076 0.924 54 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.195 -1.912 4.194 23.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.101 0.899 4 C -0.128 4.128 5 C -0.122 4.122 6 C 0.305 3.695 7 O -0.464 6.464 8 N -0.340 5.340 9 C -0.008 4.008 10 C -0.153 4.153 11 C -0.103 4.103 12 C 0.037 3.963 13 N -0.398 5.398 14 C -0.468 4.468 15 H 0.079 0.921 16 C -0.293 4.293 17 N -0.621 5.621 18 Si 0.953 3.047 19 H -0.211 1.211 20 H -0.202 1.202 21 H -0.218 1.218 22 C -0.155 4.155 23 C -0.012 4.012 24 C -0.138 4.138 25 C -0.104 4.104 26 H 0.095 0.905 27 C -0.211 4.211 28 C -0.145 4.145 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.128 0.872 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.033 0.967 41 H 0.030 0.970 42 H 0.196 0.804 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.099 0.901 47 H 0.124 0.876 48 H 0.074 0.926 49 H 0.082 0.918 50 H 0.083 0.917 51 H 0.070 0.930 52 H 0.083 0.917 53 H 0.094 0.906 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.056 -1.909 4.353 22.562 hybrid contribution -1.123 -0.672 -0.747 1.507 sum -23.179 -2.581 3.606 23.599 Atomic orbital electron populations 1.21803 0.94525 1.01798 1.02175 1.21163 0.95967 0.99916 0.93650 0.89948 1.21390 0.91939 1.01065 0.98423 1.21424 0.98000 1.01092 0.91714 1.21235 0.80515 0.82118 0.85597 1.90639 1.56960 1.36854 1.61940 1.48254 1.16273 1.36121 1.33318 1.21582 0.94251 0.96579 0.88420 1.21799 0.94345 0.97172 1.01994 1.21199 0.93313 0.97861 0.97928 1.20729 0.89459 0.89961 0.96160 1.42541 1.09310 1.04595 1.83330 1.20391 0.89751 0.94754 1.41901 0.92090 1.27143 1.08878 0.92293 1.00967 1.70958 1.17282 1.20317 1.53536 0.82609 0.70627 0.75037 0.76409 1.21077 1.20178 1.21775 1.21798 0.95752 1.00560 0.97412 1.21936 0.90508 0.89001 0.99777 1.21485 1.00407 0.98882 0.93005 1.21058 0.95904 0.96742 0.96698 0.90512 1.21987 1.00936 0.95551 1.02660 1.21624 0.94325 1.00627 0.97903 0.93125 0.91550 0.92656 0.92377 0.92657 0.87158 0.90385 0.89899 0.89614 0.92153 0.91252 0.96734 0.96971 0.80372 0.94348 0.92200 0.91743 0.90087 0.87571 0.92620 0.91815 0.91667 0.92960 0.91720 0.90556 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.19 71.98 0.66 -1.10 16 2 C -0.09 -1.19 2.45 -10.79 -0.03 -1.22 16 3 H 0.08 1.00 6.43 -2.39 -0.02 0.98 16 4 C -0.09 -1.65 4.01 30.59 0.12 -1.53 16 5 C -0.10 -1.92 1.42 -11.54 -0.02 -1.94 16 6 C 0.52 13.14 6.81 87.66 0.60 13.74 16 7 O -0.58 -19.01 15.52 -3.05 -0.05 -19.05 16 8 N -0.61 -14.40 2.97 -818.91 -2.43 -16.83 16 9 C 0.11 2.72 6.42 86.36 0.55 3.27 16 10 C -0.11 -2.88 5.36 30.67 0.16 -2.71 16 11 C -0.08 -2.52 2.19 -10.77 -0.02 -2.55 16 12 C 0.16 6.50 5.65 86.38 0.49 6.99 16 13 N -0.75 -37.55 5.32 -343.45 -1.83 -39.37 16 14 C -0.34 -19.02 9.99 84.04 0.84 -18.18 16 15 H 0.06 3.41 7.83 -2.91 -0.02 3.39 16 16 C -0.10 -5.85 5.50 84.86 0.47 -5.38 16 17 N -0.97 -59.88 13.70 21.65 0.30 -59.59 16 18 Si 1.13 51.79 29.92 68.60 2.05 53.84 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 22 C -0.12 -3.22 5.25 30.67 0.16 -3.06 16 23 C 0.11 2.34 6.23 86.36 0.54 2.88 16 24 C -0.10 -1.82 4.60 30.59 0.14 -1.68 16 25 C -0.09 -1.23 3.20 -10.81 -0.03 -1.26 16 26 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 27 C -0.15 -2.03 8.50 71.99 0.61 -1.42 16 28 C -0.11 -1.40 4.73 30.58 0.14 -1.25 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.05 1.22 7.87 -2.39 -0.02 1.20 16 34 H 0.11 1.74 4.58 -2.39 -0.01 1.73 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 2.13 7.03 -2.38 -0.02 2.11 16 37 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 39 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.36 18.37 5.68 -92.71 -0.53 17.84 16 43 H 0.25 14.93 6.78 -92.71 -0.63 14.31 16 44 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.06 2.05 7.15 -2.38 -0.02 2.04 16 46 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.11 1.84 5.20 -2.39 -0.01 1.83 16 48 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.06 1.25 7.90 -2.39 -0.02 1.23 16 50 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 51 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 52 H 0.06 0.78 4.81 -2.39 -0.01 0.77 16 53 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 54 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -69.39 398.03 3.90 -65.49 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: 0.47 Total: 31.93 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: 5.39 Total: -16.41 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -3.96 Total: -115.80 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.05 Total: -19.05 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 2.05 Total: 53.84 kcal Total: -69.39 3.90 -65.49 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206958545.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.395 kcal (2) G-P(sol) polarization free energy of solvation -69.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds