Wall clock time and date at job start Tue Mar 31 2020 15:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47229 * 2 1 4 4 C 1.53002 * 109.47552 * 120.00008 * 2 1 3 5 5 C 1.52995 * 109.46876 * 59.99615 * 4 2 1 6 6 C 1.50700 * 109.47155 * 180.02562 * 5 4 2 7 7 O 1.21285 * 120.00442 * 262.14185 * 6 5 4 8 8 N 1.34782 * 120.00007 * 82.13847 * 6 5 4 9 9 C 1.46924 * 120.63167 * 184.10652 * 8 6 5 10 10 C 1.52766 * 109.00653 * 233.58590 * 9 8 6 11 11 C 1.53039 * 109.38182 * 305.58935 * 10 9 8 12 12 C 1.52995 * 109.44921 * 181.25460 * 11 10 9 13 13 N 1.46504 * 109.47321 * 64.93707 * 12 11 10 14 14 C 1.36939 * 119.99932 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00440 * 359.97438 * 14 13 12 16 16 C 1.38818 * 119.99709 * 179.97438 * 14 13 12 17 17 N 1.31621 * 119.99964 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99871 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.46905 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46973 * 120.00048 * 18 16 14 21 21 H 1.48495 * 109.46746 * 240.00223 * 18 16 14 22 22 C 1.53035 * 109.54069 * 61.23739 * 11 10 9 23 23 C 1.46928 * 120.62695 * 4.38648 * 8 6 5 24 24 C 1.52998 * 109.46899 * 60.00539 * 5 4 2 25 25 C 1.52999 * 109.47169 * 299.99702 * 24 5 4 26 26 H 1.09003 * 109.46786 * 299.99964 * 25 24 5 27 27 C 1.53009 * 109.47103 * 180.02562 * 25 24 5 28 28 C 1.52994 * 109.47109 * 59.99975 * 25 24 5 29 29 H 1.08999 * 109.47229 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47381 * 60.00119 * 1 2 3 31 31 H 1.08999 * 109.47063 * 299.99809 * 1 2 3 32 32 H 1.08994 * 109.47133 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.46726 * 299.99779 * 4 2 1 34 34 H 1.08994 * 109.47786 * 300.00269 * 5 4 2 35 35 H 1.09004 * 109.58694 * 353.41648 * 9 8 6 36 36 H 1.08991 * 109.58878 * 113.84777 * 9 8 6 37 37 H 1.08999 * 109.56321 * 185.55432 * 10 9 8 38 38 H 1.09000 * 109.38729 * 65.51066 * 10 9 8 39 39 H 1.09007 * 109.46095 * 301.21949 * 11 10 9 40 40 H 1.09003 * 109.47116 * 184.93654 * 12 11 10 41 41 H 1.08999 * 109.47014 * 304.93444 * 12 11 10 42 42 H 0.96996 * 119.99589 * 359.97438 * 13 12 11 43 43 H 0.96992 * 119.99873 * 179.97438 * 17 16 14 44 44 H 1.09007 * 109.49774 * 178.68126 * 22 11 10 45 45 H 1.09001 * 109.52324 * 58.60909 * 22 11 10 46 46 H 1.08998 * 109.58282 * 246.15750 * 23 8 6 47 47 H 1.08998 * 109.58657 * 6.43598 * 23 8 6 48 48 H 1.09007 * 109.47286 * 179.97438 * 24 5 4 49 49 H 1.09001 * 109.47386 * 59.99915 * 24 5 4 50 50 H 1.09005 * 109.46470 * 299.99653 * 27 25 24 51 51 H 1.08997 * 109.46959 * 59.99751 * 27 25 24 52 52 H 1.09001 * 109.46818 * 180.02562 * 27 25 24 53 53 H 1.09009 * 109.47154 * 179.97438 * 28 25 24 54 54 H 1.09003 * 109.47306 * 60.00307 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5300 -2.1637 1.2492 6 6 2.0319 -2.8739 2.4800 7 8 3.0159 -3.5799 2.4139 8 7 1.3873 -2.7246 3.6542 9 6 1.9148 -3.3374 4.8809 10 6 0.8188 -4.1847 5.5248 11 6 -0.4290 -3.3245 5.7377 12 6 -1.5171 -4.1632 6.4111 13 7 -1.0760 -4.5481 7.7541 14 6 -1.8906 -5.3078 8.5507 15 1 -2.8582 -5.6229 8.1892 16 6 -1.4724 -5.6729 9.8231 17 7 -0.2928 -5.2894 10.2635 18 14 -2.5837 -6.7086 10.9101 19 1 -3.8463 -7.0055 10.1870 20 1 -1.8971 -7.9805 11.2509 21 1 -2.8914 -5.9627 12.1567 22 6 -0.9385 -2.8184 4.3863 23 6 0.1406 -1.9510 3.7306 24 6 2.0400 -2.8849 0.0000 25 6 1.5300 -2.1637 -1.2492 26 1 0.4400 -2.1638 -1.2492 27 6 2.0395 -2.8854 -2.4985 28 6 2.0400 -0.7212 -1.2492 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 3.1300 -0.7208 1.2494 33 1 1.6768 -0.2073 2.1392 34 1 0.4401 -2.1638 1.2493 35 1 2.7675 -3.9706 4.6357 36 1 2.2246 -2.5566 5.5754 37 1 1.1675 -4.5639 6.4854 38 1 0.5763 -5.0214 4.8696 39 1 -0.1801 -2.4747 6.3734 40 1 -2.4340 -3.5782 6.4835 41 1 -1.7036 -5.0593 5.8191 42 1 -0.2068 -4.2654 8.0786 43 1 -0.0008 -5.5442 11.1526 44 1 -1.8406 -2.2252 4.5366 45 1 -1.1647 -3.6673 3.7412 46 1 0.3028 -1.0548 4.3293 47 1 -0.1756 -1.6675 2.7267 48 1 1.6771 -3.9128 0.0002 49 1 3.1301 -2.8849 0.0000 50 1 3.1296 -2.8856 -2.4987 51 1 1.6759 -3.9129 -2.4982 52 1 1.6765 -2.3712 -3.3885 53 1 1.6770 -0.2075 -2.1395 54 1 3.1300 -0.7212 -1.2493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206958546.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:04 Heat of formation + Delta-G solvation = -81.019160 kcal Electronic energy + Delta-G solvation = -28664.050378 eV Core-core repulsion = 25019.401630 eV Total energy + Delta-G solvation = -3644.648748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.75910 -39.88084 -38.68123 -36.58047 -34.60109 -33.99816 -33.09471 -32.22368 -31.69474 -28.27053 -27.62410 -27.31440 -25.72259 -25.03278 -23.68572 -23.05415 -22.17309 -21.32420 -19.91612 -19.56096 -19.14645 -18.08050 -17.09409 -16.70501 -16.44885 -15.99858 -15.76465 -15.54803 -15.39506 -15.32016 -15.06938 -14.77683 -14.63921 -14.35822 -14.21216 -14.08880 -13.80319 -13.59355 -13.35732 -13.14918 -13.03698 -12.92923 -12.78309 -12.62671 -12.46222 -12.23646 -12.12725 -12.09145 -12.01745 -11.88380 -11.78535 -11.67911 -11.49122 -11.40036 -11.33546 -11.09973 -10.93878 -10.79426 -10.50990 -9.65762 -8.99162 -7.96026 -5.24185 1.46215 1.47037 1.57084 1.60202 1.99606 2.55253 3.37603 3.41829 3.66931 3.71438 3.76856 3.84046 3.87023 4.07337 4.09846 4.17848 4.19226 4.27748 4.31377 4.36862 4.37098 4.46282 4.50929 4.59450 4.64003 4.72775 4.78065 4.80790 4.83681 4.86216 4.88623 4.97174 4.98774 5.01150 5.06053 5.08069 5.09783 5.15026 5.19241 5.20737 5.28754 5.29895 5.33419 5.43349 5.46945 5.49346 5.53270 5.53732 5.58538 5.68331 6.26943 6.44122 7.16683 7.33095 8.10397 8.33047 9.27792 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.027854 B = 0.002322 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.010488 B =12056.104880 C =12268.768169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.084 4.084 3 H 0.082 0.918 4 C -0.099 4.099 5 C -0.098 4.098 6 C 0.511 3.489 7 O -0.592 6.592 8 N -0.607 5.607 9 C 0.117 3.883 10 C -0.114 4.114 11 C -0.083 4.083 12 C 0.157 3.843 13 N -0.745 5.745 14 C -0.243 4.243 15 H 0.074 0.926 16 C -0.078 4.078 17 N -0.970 5.970 18 Si 0.973 3.027 19 H -0.266 1.266 20 H -0.295 1.295 21 H -0.292 1.292 22 C -0.120 4.120 23 C 0.106 3.894 24 C -0.093 4.093 25 C -0.087 4.087 26 H 0.085 0.915 27 C -0.148 4.148 28 C -0.109 4.109 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.049 0.951 39 H 0.070 0.930 40 H 0.026 0.974 41 H 0.011 0.989 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.099 0.901 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.115 0.885 48 H 0.050 0.950 49 H 0.051 0.949 50 H 0.047 0.953 51 H 0.050 0.950 52 H 0.067 0.933 53 H 0.076 0.924 54 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.253 14.717 -27.064 30.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.103 4.103 3 H 0.100 0.900 4 C -0.137 4.137 5 C -0.119 4.119 6 C 0.301 3.699 7 O -0.473 6.473 8 N -0.339 5.339 9 C -0.006 4.006 10 C -0.153 4.153 11 C -0.102 4.102 12 C 0.030 3.970 13 N -0.388 5.388 14 C -0.375 4.375 15 H 0.092 0.908 16 C -0.270 4.270 17 N -0.621 5.621 18 Si 0.802 3.198 19 H -0.190 1.190 20 H -0.222 1.222 21 H -0.219 1.219 22 C -0.159 4.159 23 C -0.016 4.016 24 C -0.131 4.131 25 C -0.106 4.106 26 H 0.103 0.897 27 C -0.205 4.205 28 C -0.147 4.147 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.134 0.866 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.029 0.971 42 H 0.206 0.794 43 H 0.060 0.940 44 H 0.118 0.882 45 H 0.083 0.917 46 H 0.104 0.896 47 H 0.133 0.867 48 H 0.068 0.932 49 H 0.069 0.931 50 H 0.067 0.933 51 H 0.070 0.930 52 H 0.086 0.914 53 H 0.095 0.905 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.589 14.262 -27.070 30.639 hybrid contribution 0.238 -1.135 1.486 1.885 sum 1.826 13.127 -25.584 28.813 Atomic orbital electron populations 1.21985 0.94119 1.02367 1.02632 1.21070 0.96817 0.99164 0.93223 0.89976 1.21510 1.00368 0.92001 0.99832 1.21424 1.02956 0.96512 0.90962 1.21421 0.82758 0.80488 0.85262 1.90653 1.29179 1.41580 1.85842 1.48280 1.25801 1.52208 1.07568 1.21378 0.96378 0.97040 0.85789 1.21675 0.95734 0.97936 0.99936 1.21202 0.94220 0.97604 0.97192 1.20849 0.95687 0.95485 0.84954 1.42614 1.19860 1.62816 1.13488 1.19673 0.98683 1.23547 0.95612 0.90775 1.25572 0.98675 1.03383 0.99338 1.69818 1.21161 1.52286 1.18800 0.85078 0.78333 0.77763 0.78631 1.19031 1.22206 1.21889 1.21888 0.98997 1.00405 0.94576 1.22075 0.81961 0.93887 1.03630 1.21400 1.00529 0.98175 0.93020 1.21157 1.01087 0.94969 0.93344 0.89721 1.21824 1.00935 1.00252 0.97487 1.21645 1.00270 0.94614 0.98126 0.92094 0.91857 0.91802 0.92968 0.90439 0.86558 0.91187 0.90628 0.92596 0.93225 0.91119 0.95613 0.97063 0.79351 0.94034 0.88239 0.91722 0.89565 0.86676 0.93155 0.93055 0.93341 0.93046 0.91367 0.90518 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.50 71.98 0.61 -0.52 16 2 C -0.08 -0.81 3.19 -10.79 -0.03 -0.85 16 3 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 4 C -0.10 -1.37 4.67 30.59 0.14 -1.23 16 5 C -0.10 -1.67 1.42 -11.54 -0.02 -1.69 16 6 C 0.51 13.21 6.83 87.66 0.60 13.81 16 7 O -0.59 -20.77 15.47 -3.04 -0.05 -20.82 16 8 N -0.61 -14.48 2.98 -819.73 -2.44 -16.92 16 9 C 0.12 3.36 6.41 86.22 0.55 3.92 16 10 C -0.11 -3.73 5.23 30.53 0.16 -3.57 16 11 C -0.08 -2.50 2.19 -10.77 -0.02 -2.52 16 12 C 0.16 6.12 5.65 86.38 0.49 6.61 16 13 N -0.74 -37.97 5.32 -343.44 -1.83 -39.80 16 14 C -0.24 -13.73 9.99 84.03 0.84 -12.89 16 15 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 16 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 17 N -0.97 -59.97 13.06 21.65 0.28 -59.69 16 18 Si 0.97 46.62 29.55 68.60 2.03 48.65 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 21 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 22 C -0.12 -2.48 5.36 30.67 0.16 -2.31 16 23 C 0.11 1.76 5.94 86.36 0.51 2.28 16 24 C -0.09 -1.71 3.98 30.59 0.12 -1.59 16 25 C -0.09 -1.08 2.44 -10.79 -0.03 -1.11 16 26 H 0.08 0.89 6.43 -2.39 -0.02 0.87 16 27 C -0.15 -1.78 9.20 71.99 0.66 -1.12 16 28 C -0.11 -1.15 4.73 30.59 0.14 -1.00 16 29 H 0.06 0.46 4.81 -2.39 -0.01 0.45 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 0.94 7.78 -2.39 -0.02 0.92 16 34 H 0.12 1.49 4.50 -2.39 -0.01 1.48 16 35 H 0.07 2.29 7.00 -2.39 -0.02 2.27 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 37 H 0.06 2.16 7.15 -2.39 -0.02 2.15 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.37 20.24 6.84 -92.71 -0.63 19.61 16 43 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 44 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 45 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.12 1.24 5.41 -2.39 -0.01 1.23 16 48 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 49 H 0.05 1.16 7.89 -2.39 -0.02 1.14 16 50 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 51 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 52 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 53 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 54 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -71.52 399.45 3.58 -67.93 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.22 Total: 28.47 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 5.37 Total: -7.82 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -3.98 Total: -116.41 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.05 Total: -20.82 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -71.52 3.58 -67.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206958546.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.085 kcal (2) G-P(sol) polarization free energy of solvation -71.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds