Wall clock time and date at job start Tue Mar 31 2020 15:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47044 * 2 1 4 4 C 1.53004 * 109.47142 * 239.99855 * 2 1 3 5 5 C 1.52994 * 109.47467 * 300.00181 * 4 2 1 6 6 C 1.53002 * 109.47316 * 299.99994 * 5 4 2 7 7 C 1.53004 * 109.46848 * 59.99627 * 6 5 4 8 8 C 1.53001 * 109.47192 * 120.00127 * 2 1 3 9 9 H 1.08999 * 109.47309 * 179.97438 * 8 2 1 10 10 C 1.52992 * 109.47148 * 299.99882 * 8 2 1 11 11 C 1.50700 * 109.47257 * 184.99859 * 10 8 2 12 12 O 1.21279 * 120.00113 * 0.02562 * 11 10 8 13 13 N 1.34784 * 119.99961 * 180.02562 * 11 10 8 14 14 C 1.46927 * 120.62995 * 359.72079 * 13 11 10 15 15 C 1.52758 * 109.00682 * 233.58186 * 14 13 11 16 16 C 1.53039 * 109.38439 * 305.58958 * 15 14 13 17 17 C 1.53004 * 109.44908 * 181.25300 * 16 15 14 18 18 N 1.46502 * 109.46998 * 64.93880 * 17 16 15 19 19 C 1.36931 * 120.00147 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99759 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00354 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99832 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00107 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47121 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47177 * 120.00054 * 23 21 19 26 26 H 1.48503 * 109.46865 * 240.00059 * 23 21 19 27 27 C 1.53041 * 109.53647 * 61.24252 * 16 15 14 28 28 C 1.46923 * 120.62964 * 179.97438 * 13 11 10 29 29 H 1.08996 * 109.46952 * 299.99506 * 1 2 3 30 30 H 1.08997 * 109.46648 * 60.00127 * 1 2 3 31 31 H 1.08999 * 109.47044 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46613 * 60.00408 * 4 2 1 33 33 H 1.09000 * 109.47274 * 179.97438 * 4 2 1 34 34 H 1.09006 * 109.47026 * 59.99661 * 5 4 2 35 35 H 1.08998 * 109.47737 * 179.97438 * 5 4 2 36 36 H 1.08999 * 109.47557 * 179.97438 * 6 5 4 37 37 H 1.08998 * 109.46758 * 300.00452 * 6 5 4 38 38 H 1.09005 * 109.47076 * 180.02562 * 7 6 5 39 39 H 1.08993 * 109.47415 * 60.00602 * 7 6 5 40 40 H 1.09004 * 109.47330 * 64.99881 * 10 8 2 41 41 H 1.08997 * 109.47279 * 305.00368 * 10 8 2 42 42 H 1.09003 * 109.58790 * 353.42296 * 14 13 11 43 43 H 1.09007 * 109.58432 * 113.84106 * 14 13 11 44 44 H 1.08998 * 109.56153 * 185.55612 * 15 14 13 45 45 H 1.09003 * 109.38437 * 65.51806 * 15 14 13 46 46 H 1.09000 * 109.45771 * 301.22193 * 16 15 14 47 47 H 1.08996 * 109.47126 * 184.93548 * 17 16 15 48 48 H 1.08995 * 109.47025 * 304.94468 * 17 16 15 49 49 H 0.96998 * 120.00024 * 0.02562 * 18 17 16 50 50 H 0.96994 * 120.00038 * 179.97438 * 22 21 19 51 51 H 1.08996 * 109.49638 * 178.68503 * 27 16 15 52 52 H 1.08997 * 109.50160 * 58.58619 * 27 16 15 53 53 H 1.08998 * 109.59009 * 246.15627 * 28 13 11 54 54 H 1.09003 * 109.58381 * 6.44334 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5301 -2.1637 -1.2493 6 6 2.0400 -2.8851 -0.0001 7 6 1.5300 -2.1638 1.2492 8 6 2.0401 -0.7213 1.2492 9 1 3.1300 -0.7217 1.2490 10 6 1.5301 -0.0001 2.4984 11 6 2.1310 -0.6354 3.7258 12 8 2.8925 -1.5725 3.6125 13 7 1.8221 -0.1622 4.9494 14 6 0.9059 0.9761 5.1025 15 6 1.5846 2.0505 5.9503 16 6 2.0499 1.4356 7.2722 17 6 2.7021 2.5173 8.1356 18 7 1.6984 3.5188 8.5043 19 6 2.0527 4.5898 9.2804 20 1 3.0721 4.6960 9.6211 21 6 1.1016 5.5384 9.6303 22 7 -0.1408 5.4087 9.2155 23 14 1.5849 6.9990 10.6897 24 1 3.0297 6.9130 11.0220 25 1 1.3213 8.2578 9.9473 26 1 0.7878 6.9871 11.9426 27 6 3.0661 0.3263 6.9909 28 6 2.3994 -0.7715 6.1553 29 1 -0.3633 0.5137 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6767 -0.2074 -2.1392 33 1 3.1301 -0.7209 -1.2495 34 1 0.4400 -2.1637 -1.2493 35 1 1.8930 -2.6775 -2.1395 36 1 1.6763 -3.9126 0.0001 37 1 3.1300 -2.8850 -0.0001 38 1 1.8937 -2.6774 2.1392 39 1 0.4401 -2.1638 1.2492 40 1 0.4438 -0.0770 2.5444 41 1 1.8184 1.0502 2.4548 42 1 0.6642 1.3852 4.1214 43 1 -0.0073 0.6462 5.5980 44 1 0.8785 2.8559 6.1523 45 1 2.4446 2.4473 5.4108 46 1 1.1927 1.0175 7.7998 47 1 3.1115 2.0639 9.0382 48 1 3.5038 2.9964 7.5737 49 1 0.7828 3.4232 8.1986 50 1 -0.8055 6.0713 9.4603 51 1 3.4146 -0.0953 7.9337 52 1 3.9123 0.7388 6.4415 53 1 1.6104 -1.2465 6.7383 54 1 3.1412 -1.5169 5.8687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206967540.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:08 Heat of formation + Delta-G solvation = -80.103307 kcal Electronic energy + Delta-G solvation = -28334.950316 eV Core-core repulsion = 24690.341283 eV Total energy + Delta-G solvation = -3644.609034 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.52284 -40.05703 -38.70985 -36.53243 -34.52801 -33.80737 -32.64407 -32.27576 -31.85728 -29.10707 -28.03107 -26.94428 -25.41228 -24.27636 -23.53763 -23.07876 -22.34824 -21.31975 -19.85511 -19.30137 -19.12825 -18.03719 -16.91287 -16.69772 -16.57260 -16.53070 -15.70880 -15.51881 -15.35931 -15.32174 -15.15670 -14.84226 -14.58714 -14.45495 -13.96302 -13.87836 -13.76067 -13.61548 -13.42751 -13.17316 -13.08454 -12.91379 -12.79434 -12.62356 -12.39355 -12.18964 -12.17615 -12.10532 -11.95984 -11.89232 -11.67820 -11.60569 -11.49286 -11.31538 -11.09093 -11.00496 -10.91332 -10.77353 -10.45576 -9.60169 -8.97957 -7.95057 -5.22756 1.47718 1.47939 1.57984 1.67504 2.06117 2.56130 3.38516 3.52476 3.71212 3.75814 3.81973 3.83441 3.90800 4.00532 4.15058 4.24993 4.29781 4.33896 4.36090 4.40787 4.46466 4.52153 4.53346 4.59577 4.62202 4.70460 4.75405 4.79391 4.82623 4.84755 4.86856 4.94028 4.97981 5.03982 5.06868 5.07991 5.13825 5.17348 5.23320 5.24316 5.29961 5.31888 5.36114 5.45018 5.48049 5.51444 5.54312 5.60970 5.64353 5.73139 6.28241 6.46762 7.22778 7.34949 8.10838 8.35527 9.28471 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.022984 B = 0.002284 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.931284 B =12254.763499 C =13044.583358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.073 0.927 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.116 4.116 7 C -0.117 4.117 8 C -0.060 4.060 9 H 0.054 0.946 10 C -0.135 4.135 11 C 0.510 3.490 12 O -0.578 6.578 13 N -0.611 5.611 14 C 0.112 3.888 15 C -0.120 4.120 16 C -0.083 4.083 17 C 0.157 3.843 18 N -0.741 5.741 19 C -0.245 4.245 20 H 0.071 0.929 21 C -0.073 4.073 22 N -0.966 5.966 23 Si 0.970 3.030 24 H -0.269 1.269 25 H -0.292 1.292 26 H -0.293 1.293 27 C -0.115 4.115 28 C 0.115 3.885 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.069 0.931 47 H 0.016 0.984 48 H 0.013 0.987 49 H 0.377 0.623 50 H 0.252 0.748 51 H 0.084 0.916 52 H 0.059 0.941 53 H 0.076 0.924 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.851 -15.363 -20.933 25.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.154 4.154 7 C -0.154 4.154 8 C -0.079 4.079 9 H 0.072 0.928 10 C -0.174 4.174 11 C 0.301 3.699 12 O -0.458 6.458 13 N -0.344 5.344 14 C -0.010 4.010 15 C -0.158 4.158 16 C -0.102 4.102 17 C 0.030 3.970 18 N -0.385 5.385 19 C -0.377 4.377 20 H 0.089 0.911 21 C -0.266 4.266 22 N -0.617 5.617 23 Si 0.800 3.200 24 H -0.194 1.194 25 H -0.219 1.219 26 H -0.220 1.220 27 C -0.154 4.154 28 C -0.008 4.008 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.034 0.966 48 H 0.031 0.969 49 H 0.209 0.791 50 H 0.061 0.939 51 H 0.102 0.898 52 H 0.077 0.923 53 H 0.094 0.906 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.382 -15.759 -20.889 26.203 hybrid contribution 0.037 0.996 0.988 1.403 sum 1.419 -14.763 -19.901 24.820 Atomic orbital electron populations 1.21997 0.94461 1.02290 1.02206 1.21121 0.96639 0.98938 0.93616 0.90900 1.21548 1.00202 0.95776 0.97574 1.21563 1.01216 0.95518 0.97219 1.21483 1.00094 0.98922 0.94895 1.21659 1.00390 0.95265 0.98098 1.20839 0.99449 0.94879 0.92705 0.92795 1.21897 1.02981 1.01389 0.91126 1.21254 0.80564 0.82935 0.85180 1.90626 1.38047 1.30445 1.86682 1.48295 1.46751 1.33385 1.05940 1.21785 0.91856 0.85272 1.02059 1.21741 1.00861 0.97849 0.95375 1.21182 0.98442 0.94905 0.95712 1.20813 0.91516 0.89268 0.95370 1.42548 1.09049 1.25386 1.61473 1.19638 0.94858 1.00328 1.22855 0.91115 1.25508 0.95749 1.02097 1.03229 1.69795 1.02397 1.37802 1.51710 0.85117 0.77617 0.79325 0.77963 1.19389 1.21896 1.22022 1.21808 0.97684 0.95412 1.00460 1.21555 0.98477 0.95377 0.85383 0.92064 0.92180 0.92066 0.91021 0.92768 0.91158 0.91778 0.92117 0.93312 0.92840 0.91557 0.86892 0.87614 0.87392 0.90252 0.91521 0.92373 0.91290 0.96574 0.96855 0.79063 0.93950 0.89770 0.92265 0.90580 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.15 71.98 0.59 -1.16 16 2 C -0.08 -1.14 2.72 -10.79 -0.03 -1.17 16 3 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.11 -1.48 5.45 30.59 0.17 -1.31 16 5 C -0.12 -1.53 5.65 30.59 0.17 -1.36 16 6 C -0.12 -1.92 5.92 30.60 0.18 -1.74 16 7 C -0.12 -2.17 4.67 30.60 0.14 -2.03 16 8 C -0.06 -1.05 1.61 -10.79 -0.02 -1.07 16 9 H 0.05 1.20 7.95 -2.39 -0.02 1.18 16 10 C -0.13 -2.28 3.02 29.85 0.09 -2.19 16 11 C 0.51 12.22 7.41 87.66 0.65 12.87 16 12 O -0.58 -17.67 13.38 -3.03 -0.04 -17.71 16 13 N -0.61 -13.96 2.98 -819.64 -2.44 -16.40 16 14 C 0.11 2.32 6.31 86.22 0.54 2.87 16 15 C -0.12 -3.31 5.23 30.53 0.16 -3.15 16 16 C -0.08 -2.50 2.19 -10.77 -0.02 -2.52 16 17 C 0.16 6.16 5.65 86.38 0.49 6.64 16 18 N -0.74 -36.87 5.32 -343.45 -1.83 -38.70 16 19 C -0.24 -13.61 9.99 84.03 0.84 -12.78 16 20 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 21 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 22 N -0.97 -57.93 13.06 21.65 0.28 -57.65 16 23 Si 0.97 45.81 29.55 68.60 2.03 47.84 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 26 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 27 C -0.11 -2.87 5.36 30.69 0.16 -2.71 16 28 C 0.11 2.68 6.44 86.38 0.56 3.24 16 29 H 0.06 0.65 6.54 -2.39 -0.02 0.63 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.71 4.81 -2.39 -0.01 0.70 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.84 6.43 -2.38 -0.02 0.82 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.05 1.31 5.95 -2.38 -0.01 1.29 16 39 H 0.07 1.09 6.43 -2.39 -0.02 1.08 16 40 H 0.11 1.51 6.52 -2.38 -0.02 1.50 16 41 H 0.11 1.56 7.68 -2.39 -0.02 1.54 16 42 H 0.11 1.70 5.94 -2.39 -0.01 1.68 16 43 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 44 H 0.07 2.16 7.15 -2.39 -0.02 2.15 16 45 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.38 19.52 6.84 -92.71 -0.63 18.89 16 50 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 51 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 52 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 53 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 54 H 0.08 2.08 7.00 -2.39 -0.02 2.06 16 Total: -1.00 -66.49 394.40 3.37 -63.12 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: 0.23 Total: 30.78 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: 5.14 Total: -11.27 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -3.98 Total: -112.75 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.04 Total: -17.71 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -66.49 3.37 -63.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206967540.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.983 kcal (2) G-P(sol) polarization free energy of solvation -66.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds