Wall clock time and date at job start Tue Mar 31 2020 15:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.46659 * 2 1 4 4 C 1.52996 * 109.47012 * 119.99321 * 2 1 3 5 5 C 1.53007 * 109.47161 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47146 * 300.00568 * 5 4 2 7 7 C 1.53000 * 109.46926 * 59.99757 * 6 5 4 8 8 C 1.52990 * 109.47458 * 239.99978 * 2 1 3 9 9 H 1.09001 * 109.47314 * 300.00047 * 8 2 1 10 10 C 1.53005 * 109.47411 * 59.99805 * 8 2 1 11 11 C 1.50695 * 109.47324 * 185.00046 * 10 8 2 12 12 O 1.21279 * 120.00214 * 359.97438 * 11 10 8 13 13 N 1.34776 * 120.00124 * 179.97438 * 11 10 8 14 14 C 1.46929 * 120.63048 * 179.97438 * 13 11 10 15 15 C 1.53190 * 108.77412 * 233.62850 * 14 13 11 16 16 C 1.53042 * 109.31771 * 305.36685 * 15 14 13 17 17 C 1.52996 * 109.46385 * 181.38377 * 16 15 14 18 18 N 1.46498 * 109.47059 * 174.99850 * 17 16 15 19 19 C 1.36943 * 119.99752 * 179.72430 * 18 17 16 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 17 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 17 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47159 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47290 * 120.00044 * 23 21 19 26 26 H 1.48503 * 109.47163 * 240.00049 * 23 21 19 27 27 C 1.53045 * 109.53342 * 61.36413 * 16 15 14 28 28 C 1.46924 * 120.62924 * 0.02562 * 13 11 10 29 29 H 1.09009 * 109.46659 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47595 * 299.99772 * 1 2 3 31 31 H 1.09003 * 109.46886 * 60.00689 * 1 2 3 32 32 H 1.08999 * 109.47681 * 300.00854 * 4 2 1 33 33 H 1.09003 * 109.47245 * 60.00660 * 4 2 1 34 34 H 1.09003 * 109.46776 * 60.00037 * 5 4 2 35 35 H 1.08998 * 109.46929 * 180.02562 * 5 4 2 36 36 H 1.08994 * 109.47271 * 179.97438 * 6 5 4 37 37 H 1.08995 * 109.46960 * 299.99782 * 6 5 4 38 38 H 1.09007 * 109.46694 * 180.02562 * 7 6 5 39 39 H 1.08995 * 109.47281 * 60.00221 * 7 6 5 40 40 H 1.08996 * 109.46926 * 65.00110 * 10 8 2 41 41 H 1.09001 * 109.46872 * 305.00251 * 10 8 2 42 42 H 1.09003 * 109.58512 * 113.84603 * 14 13 11 43 43 H 1.08996 * 109.70448 * 353.48717 * 14 13 11 44 44 H 1.08999 * 109.50131 * 185.41252 * 15 14 13 45 45 H 1.09000 * 109.52471 * 65.33349 * 15 14 13 46 46 H 1.08996 * 109.45847 * 301.36339 * 16 15 14 47 47 H 1.09004 * 109.47066 * 55.00117 * 17 16 15 48 48 H 1.08994 * 109.46974 * 295.00265 * 17 16 15 49 49 H 0.97001 * 120.00384 * 0.02562 * 18 17 16 50 50 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 51 51 H 1.08997 * 109.49727 * 58.58881 * 27 16 15 52 52 H 1.09002 * 109.49412 * 178.68958 * 27 16 15 53 53 H 1.09004 * 109.58772 * 246.15511 * 28 13 11 54 54 H 1.09005 * 109.59068 * 6.57885 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5701 -0.7205 1.2497 6 6 4.0806 -1.4415 0.0004 7 6 3.5706 -0.7202 -1.2488 8 6 2.0401 -0.7212 -1.2491 9 1 1.6768 -1.7489 -1.2492 10 6 1.5301 0.0000 -2.4985 11 6 1.9289 -0.7783 -3.7257 12 8 2.5593 -1.8081 -3.6125 13 7 1.5849 -0.3300 -4.9493 14 6 1.9669 -1.0774 -6.1552 15 6 2.7050 -0.1320 -7.1081 16 6 1.8325 1.0957 -7.3797 17 6 2.5519 2.0260 -8.3584 18 7 1.6692 3.1407 -8.7111 19 6 2.1028 4.1105 -9.5752 20 1 3.0940 4.0512 -10.0001 21 6 1.2685 5.1698 -9.9050 22 7 0.0608 5.2422 -9.3867 23 14 1.8598 6.4923 -11.0842 24 1 3.2437 6.1810 -11.5235 25 1 0.9637 6.5369 -12.2676 26 1 1.8417 7.8100 -10.3996 27 6 1.5722 1.8389 -6.0674 28 6 0.8218 0.9161 -5.1027 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8901 32 1 1.6766 -0.2073 2.1393 33 1 1.6767 -1.7488 1.2494 34 1 3.9330 0.3073 1.2498 35 1 3.9333 -1.2347 2.1395 36 1 5.1706 -1.4407 0.0004 37 1 3.7177 -2.4692 0.0002 38 1 3.9340 -1.2342 -2.1388 39 1 3.9335 0.3075 -1.2486 40 1 1.9647 0.9985 -2.5444 41 1 0.4438 0.0782 -2.4548 42 1 1.0727 -1.4641 -6.6440 43 1 2.6212 -1.9054 -5.8825 44 1 2.9094 -0.6477 -8.0464 45 1 3.6445 0.1827 -6.6539 46 1 0.8833 0.7783 -7.8114 47 1 2.8153 1.4720 -9.2594 48 1 3.4578 2.4133 -7.8922 49 1 0.7791 3.1941 -8.3292 50 1 -0.5223 5.9822 -9.6174 51 1 2.5221 2.1349 -5.6224 52 1 0.9702 2.7259 -6.2649 53 1 -0.1661 0.6924 -5.5056 54 1 0.7213 1.4049 -4.1335 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206967541.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:12 Heat of formation + Delta-G solvation = -83.633788 kcal Electronic energy + Delta-G solvation = -28316.700865 eV Core-core repulsion = 24671.938738 eV Total energy + Delta-G solvation = -3644.762127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.47742 -39.86450 -38.64401 -36.52942 -34.54935 -34.00282 -33.03068 -32.29551 -31.83938 -29.04498 -27.91087 -26.74528 -25.41603 -24.28312 -23.57143 -22.70614 -21.91183 -21.29242 -20.57174 -19.83960 -19.13930 -18.04396 -16.88835 -16.72394 -16.49491 -15.95836 -15.66890 -15.46067 -15.38215 -15.30919 -15.18716 -14.93137 -14.87867 -14.32122 -14.26200 -13.92593 -13.62197 -13.54789 -13.32579 -13.13488 -12.94445 -12.89188 -12.77196 -12.62503 -12.46456 -12.30794 -12.18558 -12.11033 -11.96051 -11.83586 -11.69950 -11.67126 -11.49345 -11.31502 -11.27243 -11.04999 -10.92157 -10.78829 -10.46142 -9.59991 -8.97899 -7.95079 -5.22792 1.47730 1.47968 1.57996 1.67334 2.06099 2.56160 3.38548 3.52002 3.70735 3.76307 3.79994 3.84204 3.89187 4.00405 4.14732 4.18131 4.28702 4.30612 4.35560 4.40557 4.46905 4.50572 4.58366 4.60047 4.63829 4.71746 4.74001 4.75983 4.82543 4.84450 4.87902 4.91653 4.97295 5.00329 5.06662 5.07945 5.10001 5.17317 5.23569 5.25327 5.29696 5.33333 5.34912 5.41623 5.48061 5.51605 5.54352 5.56535 5.63313 5.68615 6.28275 6.46672 7.22646 7.34966 8.10835 8.35495 9.28469 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.019566 B = 0.002339 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.706987 B =11966.126690 C =12480.598735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.084 4.084 3 H 0.075 0.925 4 C -0.112 4.112 5 C -0.118 4.118 6 C -0.116 4.116 7 C -0.119 4.119 8 C -0.058 4.058 9 H 0.059 0.941 10 C -0.137 4.137 11 C 0.510 3.490 12 O -0.578 6.578 13 N -0.611 5.611 14 C 0.115 3.885 15 C -0.115 4.115 16 C -0.084 4.084 17 C 0.157 3.843 18 N -0.741 5.741 19 C -0.245 4.245 20 H 0.071 0.929 21 C -0.073 4.073 22 N -0.966 5.966 23 Si 0.970 3.030 24 H -0.269 1.269 25 H -0.293 1.293 26 H -0.292 1.292 27 C -0.120 4.120 28 C 0.112 3.888 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.105 0.895 41 H 0.115 0.885 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.058 0.942 46 H 0.069 0.931 47 H 0.016 0.984 48 H 0.013 0.987 49 H 0.377 0.623 50 H 0.252 0.748 51 H 0.057 0.943 52 H 0.066 0.934 53 H 0.080 0.920 54 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.901 -13.467 21.637 25.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.102 4.102 3 H 0.093 0.907 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.154 4.154 7 C -0.157 4.157 8 C -0.077 4.077 9 H 0.077 0.923 10 C -0.176 4.176 11 C 0.301 3.699 12 O -0.458 6.458 13 N -0.344 5.344 14 C -0.008 4.008 15 C -0.154 4.154 16 C -0.102 4.102 17 C 0.030 3.970 18 N -0.385 5.385 19 C -0.377 4.377 20 H 0.089 0.911 21 C -0.266 4.266 22 N -0.617 5.617 23 Si 0.800 3.200 24 H -0.194 1.194 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.158 4.158 28 C -0.010 4.010 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.123 0.877 41 H 0.133 0.867 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.034 0.966 48 H 0.031 0.969 49 H 0.209 0.791 50 H 0.061 0.939 51 H 0.076 0.924 52 H 0.084 0.916 53 H 0.098 0.902 54 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.366 -13.939 21.575 25.795 hybrid contribution 0.014 0.897 -1.049 1.381 sum 2.380 -13.042 20.526 24.434 Atomic orbital electron populations 1.21924 0.94570 1.01896 1.02442 1.21148 0.95947 0.99524 0.93626 0.90700 1.21573 0.95261 1.00546 0.97541 1.21542 0.95937 1.00717 0.97314 1.21482 0.99998 0.99110 0.94780 1.21665 0.95442 1.00259 0.98287 1.20867 0.95218 0.98885 0.92692 0.92266 1.21932 1.04260 1.00266 0.91162 1.21239 0.78144 0.85322 0.85207 1.90625 1.41860 1.26604 1.86709 1.48293 1.55181 1.25006 1.05894 1.21543 0.99960 0.94452 0.84831 1.21802 0.98244 0.95458 0.99855 1.21182 0.99058 0.94833 0.95172 1.20810 0.92750 0.88163 0.95236 1.42552 1.16111 1.25477 1.54320 1.19638 0.98666 1.01132 1.18234 0.91123 1.25506 0.96668 1.01374 1.03008 1.69799 1.08856 1.33634 1.49431 0.85119 0.77634 0.79023 0.78258 1.19393 1.22010 1.21895 1.21807 1.00850 0.98201 0.94931 1.21870 0.94497 0.83304 1.01328 0.93021 0.91870 0.91827 0.90944 0.92461 0.91826 0.91493 0.92307 0.92925 0.92759 0.92427 0.87700 0.86731 0.90576 0.89953 0.89771 0.92274 0.91284 0.96562 0.96883 0.79063 0.93949 0.92371 0.91567 0.90195 0.87400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.85 71.98 0.64 -1.11 16 2 C -0.08 -1.13 2.25 -10.80 -0.02 -1.15 16 3 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 4 C -0.11 -1.44 5.20 30.60 0.16 -1.28 16 5 C -0.12 -1.61 5.92 30.60 0.18 -1.42 16 6 C -0.12 -2.01 5.92 30.60 0.18 -1.83 16 7 C -0.12 -2.38 4.95 30.61 0.15 -2.23 16 8 C -0.06 -1.02 1.37 -10.78 -0.01 -1.03 16 9 H 0.06 1.26 7.96 -2.39 -0.02 1.24 16 10 C -0.14 -2.33 3.30 29.85 0.10 -2.24 16 11 C 0.51 12.25 7.42 87.66 0.65 12.90 16 12 O -0.58 -17.67 13.38 -3.03 -0.04 -17.71 16 13 N -0.61 -13.98 2.97 -818.99 -2.43 -16.41 16 14 C 0.11 2.68 6.43 86.36 0.56 3.24 16 15 C -0.11 -2.87 5.36 30.67 0.16 -2.71 16 16 C -0.08 -2.50 2.19 -10.77 -0.02 -2.52 16 17 C 0.16 6.16 5.65 86.38 0.49 6.65 16 18 N -0.74 -36.88 5.32 -343.46 -1.83 -38.71 16 19 C -0.24 -13.61 9.99 84.03 0.84 -12.77 16 20 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 21 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 22 N -0.97 -57.95 13.06 21.65 0.28 -57.67 16 23 Si 0.97 45.80 29.55 68.60 2.03 47.83 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 26 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 27 C -0.12 -3.30 5.25 30.66 0.16 -3.14 16 28 C 0.11 2.32 6.34 86.35 0.55 2.87 16 29 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.67 6.32 -2.39 -0.02 0.66 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 37 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.05 1.40 5.95 -2.38 -0.01 1.39 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.10 1.58 7.69 -2.39 -0.02 1.56 16 41 H 0.11 1.52 5.97 -2.39 -0.01 1.51 16 42 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.08 2.08 7.01 -2.39 -0.02 2.06 16 44 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 48 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.38 19.52 6.84 -92.71 -0.63 18.89 16 50 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 51 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 52 H 0.07 2.15 7.15 -2.39 -0.02 2.14 16 53 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 54 H 0.11 1.70 5.93 -2.38 -0.01 1.69 16 Total: -1.00 -66.45 401.02 3.44 -63.01 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: 0.21 Total: 31.13 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 5.22 Total: -11.47 kcal Atomic # 7 Polarization: -108.81 SS G_CDS: -3.98 Total: -112.79 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.04 Total: -17.71 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -66.45 3.44 -63.01 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206967541.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.627 kcal (2) G-P(sol) polarization free energy of solvation -66.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds