Wall clock time and date at job start Tue Mar 31 2020 15:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 C 1.52997 * 109.47482 * 239.99435 * 2 1 3 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47328 * 60.00126 * 5 4 2 7 7 C 1.53002 * 109.46891 * 299.99597 * 6 5 4 8 8 C 1.52997 * 109.46978 * 60.00410 * 7 6 5 9 9 H 1.09001 * 109.47375 * 59.99908 * 8 7 6 10 10 C 1.52997 * 109.47232 * 179.97438 * 8 7 6 11 11 C 1.50695 * 109.47464 * 294.99972 * 10 8 7 12 12 O 1.21283 * 119.99657 * 359.97438 * 11 10 8 13 13 N 1.34775 * 120.00684 * 180.02562 * 11 10 8 14 14 C 1.46927 * 120.62760 * 359.71501 * 13 11 10 15 15 C 1.53625 * 108.54058 * 126.36996 * 14 13 11 16 16 C 1.53034 * 109.23977 * 54.86039 * 15 14 13 17 17 C 1.53006 * 109.44700 * 178.49507 * 16 15 14 18 18 N 1.46495 * 109.47027 * 295.05984 * 17 16 15 19 19 C 1.36941 * 119.99759 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99898 * 359.97438 * 19 18 17 21 21 C 1.38805 * 120.00211 * 180.02562 * 19 18 17 22 22 N 1.31625 * 119.99839 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00352 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47536 * 59.99771 * 23 21 19 25 25 H 1.48501 * 109.47356 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47050 * 299.99758 * 23 21 19 27 27 C 1.53043 * 109.53728 * 298.50708 * 16 15 14 28 28 C 1.46921 * 120.63472 * 180.02562 * 13 11 10 29 29 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47747 * 300.00400 * 1 2 3 31 31 H 1.09002 * 109.47103 * 60.00812 * 1 2 3 32 32 H 1.09002 * 109.47153 * 59.99783 * 4 2 1 33 33 H 1.09001 * 109.46832 * 299.99974 * 4 2 1 34 34 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 35 35 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 36 36 H 1.08992 * 109.47554 * 59.99639 * 6 5 4 37 37 H 1.09004 * 109.47108 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.47097 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.47142 * 300.00176 * 7 6 5 40 40 H 1.09008 * 109.47017 * 54.99755 * 10 8 7 41 41 H 1.09006 * 109.47500 * 174.99757 * 10 8 7 42 42 H 1.08994 * 109.58849 * 246.20725 * 14 13 11 43 43 H 1.08999 * 109.58454 * 6.63068 * 14 13 11 44 44 H 1.08999 * 109.63685 * 294.86439 * 15 14 13 45 45 H 1.09001 * 109.45511 * 174.74501 * 15 14 13 46 46 H 1.09001 * 109.46577 * 58.52913 * 16 15 14 47 47 H 1.09002 * 109.46838 * 55.06513 * 17 16 15 48 48 H 1.09007 * 109.46778 * 175.05751 * 17 16 15 49 49 H 0.96998 * 120.00159 * 359.97438 * 18 17 16 50 50 H 0.97001 * 119.99896 * 180.02562 * 22 21 19 51 51 H 1.09003 * 109.49923 * 301.41413 * 27 16 15 52 52 H 1.09005 * 109.49986 * 181.32038 * 27 16 15 53 53 H 1.09004 * 109.58703 * 353.37136 * 28 13 11 54 54 H 1.09004 * 109.59152 * 113.79338 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7218 -1.2487 6 6 4.0795 -1.4433 0.0006 7 6 3.5694 -0.7219 1.2497 8 6 2.0395 -0.7214 1.2494 9 1 1.6758 -1.7490 1.2493 10 6 1.5294 -0.0006 2.4988 11 6 1.9275 -0.7795 3.7259 12 8 2.5568 -1.8100 3.6123 13 7 1.5833 -0.3316 4.9496 14 6 0.8255 0.9177 5.1036 15 6 -0.4237 0.6300 5.9503 16 6 0.0004 -0.0144 7.2720 17 6 -1.2373 -0.2687 8.1349 18 7 -1.8466 1.0114 8.5040 19 6 -2.9742 1.0342 9.2808 20 1 -3.4144 0.1085 9.6209 21 6 -3.5519 2.2470 9.6301 22 7 -3.0161 3.3752 9.2144 23 14 -5.0903 2.2782 10.6890 24 1 -4.8070 1.6270 11.9932 25 1 -5.5055 3.6856 10.9178 26 1 -6.1822 1.5468 9.9974 27 6 0.7072 -1.3423 6.9903 28 6 1.9647 -1.0796 6.1552 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.6767 -0.2076 -2.1392 33 1 1.6767 -1.7490 -1.2490 34 1 3.9334 -1.2354 -2.1389 35 1 3.9337 0.3057 -1.2486 36 1 3.7158 -2.4708 0.0005 37 1 5.1695 -1.4441 0.0006 38 1 3.9328 -1.2356 2.1398 39 1 3.9331 0.3056 1.2498 40 1 1.9644 0.9978 2.5453 41 1 0.4430 0.0780 2.4550 42 1 1.4455 1.6620 5.6032 43 1 0.5266 1.2870 4.1226 44 1 -1.0841 -0.0484 5.4101 45 1 -0.9481 1.5639 6.1526 46 1 0.6803 0.6540 7.8003 47 1 -1.9561 -0.8646 7.5725 48 1 -0.9466 -0.8065 9.0374 49 1 -1.4509 1.8428 8.1989 50 1 -3.4196 4.2227 9.4588 51 1 0.0361 -2.0022 6.4404 52 1 0.9881 -1.8120 7.9330 53 1 2.4179 -2.0286 5.8684 54 1 2.6756 -0.4945 6.7387 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206967543.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:20 Heat of formation + Delta-G solvation = -83.395378 kcal Electronic energy + Delta-G solvation = -28286.311322 eV Core-core repulsion = 24641.559533 eV Total energy + Delta-G solvation = -3644.751789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.47300 -39.85987 -38.63714 -36.52502 -34.54708 -34.00089 -33.02989 -32.29132 -31.81377 -29.03785 -27.90556 -26.75307 -25.40839 -24.29421 -23.55147 -22.71345 -21.91236 -21.27391 -20.59687 -19.81746 -19.13553 -18.03671 -16.88730 -16.70365 -16.55969 -15.92874 -15.67563 -15.42086 -15.37790 -15.31667 -15.16460 -14.90004 -14.84804 -14.55735 -14.05826 -13.90413 -13.70370 -13.52508 -13.28513 -13.18254 -12.94445 -12.85833 -12.71741 -12.63441 -12.46356 -12.30245 -12.22966 -12.15660 -11.94932 -11.83739 -11.69107 -11.67832 -11.49419 -11.31328 -11.27126 -11.05644 -10.90612 -10.78562 -10.44890 -9.59932 -8.97731 -7.94421 -5.22325 1.47808 1.50135 1.56342 1.67497 2.06143 2.56637 3.38749 3.52084 3.70564 3.76273 3.80902 3.83611 3.90288 3.99959 4.14935 4.17269 4.28917 4.30804 4.37181 4.40133 4.46767 4.50332 4.58906 4.60373 4.64519 4.70022 4.74512 4.76784 4.81875 4.85626 4.87152 4.90933 4.97136 5.00082 5.06557 5.07805 5.10396 5.17562 5.23846 5.25145 5.30012 5.33551 5.35404 5.41803 5.47819 5.51024 5.54267 5.57227 5.63567 5.68779 6.28497 6.46732 7.22726 7.35245 8.11239 8.35973 9.28642 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.022059 B = 0.002315 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.996551 B =12091.827268 C =12920.620496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.082 4.082 3 H 0.079 0.921 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.117 4.117 8 C -0.059 4.059 9 H 0.054 0.946 10 C -0.137 4.137 11 C 0.510 3.490 12 O -0.578 6.578 13 N -0.611 5.611 14 C 0.112 3.888 15 C -0.119 4.119 16 C -0.084 4.084 17 C 0.157 3.843 18 N -0.741 5.741 19 C -0.248 4.248 20 H 0.071 0.929 21 C -0.073 4.073 22 N -0.966 5.966 23 Si 0.971 3.029 24 H -0.280 1.280 25 H -0.294 1.294 26 H -0.279 1.279 27 C -0.115 4.115 28 C 0.115 3.885 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.058 0.942 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.013 0.987 48 H 0.016 0.984 49 H 0.377 0.623 50 H 0.252 0.748 51 H 0.058 0.942 52 H 0.084 0.916 53 H 0.082 0.918 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.635 -6.216 -20.937 25.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.101 4.101 3 H 0.098 0.902 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.154 4.154 7 C -0.154 4.154 8 C -0.078 4.078 9 H 0.072 0.928 10 C -0.176 4.176 11 C 0.301 3.699 12 O -0.458 6.458 13 N -0.344 5.344 14 C -0.010 4.010 15 C -0.158 4.158 16 C -0.102 4.102 17 C 0.030 3.970 18 N -0.384 5.384 19 C -0.380 4.380 20 H 0.089 0.911 21 C -0.265 4.265 22 N -0.617 5.617 23 Si 0.800 3.200 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.205 1.205 27 C -0.154 4.154 28 C -0.008 4.008 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.098 0.902 43 H 0.126 0.874 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.031 0.969 48 H 0.034 0.966 49 H 0.209 0.791 50 H 0.061 0.939 51 H 0.077 0.923 52 H 0.102 0.898 53 H 0.100 0.900 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 13.824 -6.836 -20.896 25.970 hybrid contribution -0.923 0.284 1.001 1.391 sum 12.901 -6.552 -19.895 24.600 Atomic orbital electron populations 1.21933 0.94966 1.01707 1.02391 1.21139 0.95594 0.99715 0.93625 0.90240 1.21579 0.95493 1.00398 0.97555 1.21532 0.95681 1.00876 0.97315 1.21488 1.00105 0.99003 0.94844 1.21642 0.95042 1.00509 0.98242 1.20864 0.95540 0.98691 0.92698 0.92771 1.21930 1.03946 1.00590 0.91147 1.21242 0.78240 0.85263 0.85175 1.90626 1.42133 1.26385 1.86684 1.48295 1.55073 1.25086 1.05937 1.21969 0.91981 0.84992 1.02059 1.21886 0.97293 1.01220 0.95355 1.21183 0.96009 0.97330 0.95724 1.20812 0.93018 0.87776 0.95357 1.42533 1.30671 1.03766 1.61479 1.19568 1.02729 0.92579 1.23076 0.91145 1.25511 1.02695 0.95124 1.03189 1.69787 1.43343 0.96921 1.51622 0.85251 0.79719 0.76172 0.78851 1.20599 1.21974 1.20542 1.21811 0.96598 0.96502 1.00449 1.21557 0.96415 0.97426 0.85380 0.93391 0.92005 0.91811 0.90944 0.92797 0.91575 0.91495 0.93252 0.92050 0.92664 0.91899 0.87015 0.87370 0.90180 0.87382 0.92328 0.91602 0.91298 0.96882 0.96604 0.79061 0.93936 0.92270 0.89782 0.89963 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.85 71.98 0.64 -1.35 16 2 C -0.08 -1.11 2.25 -10.79 -0.02 -1.14 16 3 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.11 -1.47 5.20 30.59 0.16 -1.31 16 5 C -0.12 -1.51 5.92 30.59 0.18 -1.33 16 6 C -0.12 -1.93 5.92 30.59 0.18 -1.75 16 7 C -0.12 -2.19 4.94 30.59 0.15 -2.04 16 8 C -0.06 -1.04 1.36 -10.79 -0.01 -1.06 16 9 H 0.05 1.21 7.95 -2.39 -0.02 1.19 16 10 C -0.14 -2.33 3.31 29.85 0.10 -2.23 16 11 C 0.51 12.25 7.41 87.66 0.65 12.90 16 12 O -0.58 -17.70 13.38 -3.04 -0.04 -17.74 16 13 N -0.61 -13.99 2.97 -818.01 -2.43 -16.41 16 14 C 0.11 2.32 6.37 86.51 0.55 2.87 16 15 C -0.12 -3.29 5.26 30.82 0.16 -3.13 16 16 C -0.08 -2.51 2.19 -10.77 -0.02 -2.53 16 17 C 0.16 6.17 5.65 86.38 0.49 6.66 16 18 N -0.74 -36.93 5.32 -343.44 -1.83 -38.75 16 19 C -0.25 -13.79 9.99 84.03 0.84 -12.95 16 20 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 21 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 22 N -0.97 -57.93 13.06 21.65 0.28 -57.65 16 23 Si 0.97 45.76 29.55 68.60 2.03 47.79 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 27 C -0.11 -2.88 5.36 30.69 0.16 -2.71 16 28 C 0.11 2.69 6.43 86.38 0.56 3.24 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.77 6.32 -2.39 -0.02 0.75 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 37 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.05 1.35 5.95 -2.39 -0.01 1.34 16 39 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.11 1.48 7.93 -2.38 -0.02 1.46 16 41 H 0.11 1.63 5.73 -2.38 -0.01 1.62 16 42 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.11 1.70 5.93 -2.39 -0.01 1.68 16 44 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.07 2.14 7.15 -2.39 -0.02 2.12 16 46 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 49 H 0.38 19.55 6.84 -92.71 -0.63 18.91 16 50 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 51 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 52 H 0.08 1.94 8.14 -2.38 -0.02 1.93 16 53 H 0.08 2.08 7.01 -2.38 -0.02 2.06 16 54 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -66.43 401.04 3.46 -62.98 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: 0.21 Total: 31.31 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 5.22 Total: -11.52 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -3.97 Total: -112.82 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.04 Total: -17.74 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -66.43 3.46 -62.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206967543.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.418 kcal (2) G-P(sol) polarization free energy of solvation -66.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds