Wall clock time and date at job start Tue Mar 31 2020 15:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47014 * 2 1 4 4 C 1.52998 * 109.47438 * 119.99863 * 2 1 3 5 5 N 1.46499 * 109.47017 * 66.35080 * 4 2 1 6 6 C 1.46502 * 120.00540 * 264.45176 * 5 4 2 7 7 C 1.50698 * 109.46809 * 274.13800 * 6 5 4 8 8 H 1.07995 * 120.00234 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99854 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99831 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00135 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46883 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47175 * 120.00272 * 11 9 7 14 14 H 1.48503 * 109.46967 * 240.00136 * 11 9 7 15 15 C 1.34780 * 119.99690 * 84.44849 * 5 4 2 16 16 O 1.21286 * 120.00167 * 5.33464 * 15 5 4 17 17 C 1.50702 * 120.00040 * 185.33359 * 15 5 4 18 18 H 1.08998 * 109.19076 * 35.84053 * 17 15 5 19 19 C 1.52816 * 109.22803 * 276.45393 * 17 15 5 20 20 C 1.53664 * 110.60636 * 293.42500 * 19 17 15 21 21 C 1.52245 * 107.56988 * 303.87816 * 20 19 17 22 22 H 1.09001 * 110.26178 * 302.59078 * 21 20 19 23 23 C 1.53257 * 113.91410 * 177.98637 * 21 20 19 24 24 C 1.54985 * 104.18450 * 215.56232 * 23 21 20 25 25 H 1.09007 * 110.34971 * 243.62341 * 24 23 21 26 26 C 1.53003 * 110.35032 * 121.35320 * 24 23 21 27 27 C 1.55189 * 104.93588 * 2.48633 * 24 23 21 28 28 N 1.47540 * 103.99200 * 23.51846 * 27 24 23 29 29 C 1.45666 * 117.16035 * 198.33831 * 28 27 24 30 30 H 1.09004 * 109.47364 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47036 * 299.99775 * 1 2 3 32 32 H 1.09001 * 109.47450 * 59.99923 * 1 2 3 33 33 H 1.08998 * 109.47494 * 240.00420 * 2 1 3 34 34 H 1.08997 * 109.47279 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47075 * 300.00307 * 3 2 1 36 36 H 1.09001 * 109.47036 * 60.00224 * 3 2 1 37 37 H 1.08999 * 109.47206 * 306.35569 * 4 2 1 38 38 H 1.09002 * 109.47376 * 186.35094 * 4 2 1 39 39 H 1.09000 * 109.46644 * 34.13631 * 6 5 4 40 40 H 1.08992 * 109.47282 * 154.13454 * 6 5 4 41 41 H 0.97000 * 119.99733 * 180.02562 * 10 9 7 42 42 H 1.08999 * 109.25299 * 53.71829 * 19 17 15 43 43 H 1.09001 * 109.24891 * 173.13427 * 19 17 15 44 44 H 1.08999 * 109.83627 * 63.39559 * 20 19 17 45 45 H 1.09003 * 109.83633 * 184.35849 * 20 19 17 46 46 H 1.09003 * 110.48270 * 334.23144 * 23 21 20 47 47 H 1.08993 * 110.49212 * 96.88255 * 23 21 20 48 48 H 1.09002 * 109.47102 * 59.99999 * 26 24 23 49 49 H 1.09005 * 109.47073 * 179.97438 * 26 24 23 50 50 H 1.08994 * 109.46800 * 299.99484 * 26 24 23 51 51 H 1.09005 * 110.61686 * 142.50450 * 27 24 23 52 52 H 1.09004 * 110.61340 * 265.48989 * 27 24 23 53 53 H 1.08999 * 109.79105 * 63.20923 * 29 28 27 54 54 H 1.09003 * 109.79544 * 302.36337 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6805 -2.1394 1.1753 6 6 0.4642 -2.6222 1.8340 7 6 0.7665 -2.9417 3.2753 8 1 1.7649 -2.7998 3.6619 9 6 -0.2314 -3.4152 4.1005 10 7 -1.4471 -3.5884 3.6295 11 14 0.1431 -3.8106 5.8873 12 1 1.5745 -3.5307 6.1666 13 1 -0.7063 -2.9701 6.7688 14 1 -0.1412 -5.2448 6.1470 15 6 2.4687 -3.0002 0.5012 16 8 3.5238 -2.6212 0.0384 17 6 2.0391 -4.4336 0.3226 18 1 0.9577 -4.4698 0.1910 19 6 2.4216 -5.2326 1.5678 20 6 3.9495 -5.3268 1.7017 21 6 4.4869 -5.9367 0.4144 22 1 4.0288 -6.9099 0.2378 23 6 6.0145 -6.0530 0.3724 24 6 6.3756 -5.7799 -1.1098 25 1 6.8309 -6.6632 -1.5580 26 6 7.3208 -4.5814 -1.2150 27 6 5.0221 -5.4619 -1.7992 28 7 4.1586 -5.0021 -0.6948 29 6 2.7204 -5.0142 -0.9259 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6765 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.5868 -0.2773 2.1356 38 1 3.1241 -0.6238 1.3079 39 1 -0.3051 -1.8514 1.7863 40 1 0.1098 -3.5208 1.3292 41 1 -2.1493 -3.9212 4.2101 42 1 2.0132 -4.7401 2.4503 43 1 2.0049 -6.2369 1.4924 44 1 4.3705 -4.3314 1.8433 45 1 4.2081 -5.9626 2.5484 46 1 6.4719 -5.3054 1.0205 47 1 6.3289 -7.0552 0.6634 48 1 8.2349 -4.7897 -0.6591 49 1 7.5656 -4.4025 -2.2621 50 1 6.8356 -3.6985 -0.7990 51 1 5.1465 -4.6773 -2.5455 52 1 4.6015 -6.3600 -2.2516 53 1 2.3815 -6.0372 -1.0894 54 1 2.4811 -4.4019 -1.7954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548633596.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:11 Heat of formation + Delta-G solvation = -59.907390 kcal Electronic energy + Delta-G solvation = -30329.526628 eV Core-core repulsion = 26685.793356 eV Total energy + Delta-G solvation = -3643.733273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.59357 -40.01888 -37.49273 -36.22846 -35.45745 -34.05689 -33.19922 -31.88155 -29.37116 -28.39025 -27.98825 -27.49566 -26.53385 -24.77625 -23.70508 -22.97153 -21.49073 -20.97273 -20.85020 -19.23272 -18.42754 -17.69999 -17.18579 -16.72377 -16.38095 -16.23861 -15.87660 -15.69240 -15.32191 -14.87965 -14.58145 -14.45938 -14.35470 -14.18574 -13.94100 -13.70739 -13.60521 -13.43704 -13.21699 -13.08769 -13.03930 -12.90032 -12.84378 -12.66476 -12.53870 -12.50196 -12.10125 -12.01577 -11.94490 -11.86679 -11.76235 -11.54425 -11.53316 -11.45602 -11.40201 -11.22240 -11.08028 -10.57348 -10.16185 -9.20888 -8.97190 -8.14460 -6.26237 1.39265 1.43773 1.53217 2.06790 2.39572 2.56260 3.10857 3.14924 3.61516 3.74031 3.79550 3.98518 4.03319 4.07148 4.11998 4.16750 4.22747 4.25361 4.35770 4.47430 4.52050 4.61137 4.67954 4.71407 4.73302 4.75461 4.80124 4.80865 4.83146 4.89369 4.94281 4.97278 5.01899 5.05569 5.07923 5.10170 5.11848 5.18125 5.21237 5.23069 5.32387 5.34326 5.43478 5.44308 5.48194 5.53493 5.56023 5.73415 6.04825 6.15782 6.18441 6.45158 6.72510 6.97651 7.41622 7.70234 8.89943 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.010330 B = 0.005228 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.915185 B = 5354.927205 C = 7148.798033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 C -0.134 4.134 4 C 0.128 3.872 5 N -0.605 5.605 6 C 0.253 3.747 7 C -0.529 4.529 8 H 0.047 0.953 9 C 0.026 3.974 10 N -0.918 5.918 11 Si 0.945 3.055 12 H -0.273 1.273 13 H -0.281 1.281 14 H -0.277 1.277 15 C 0.520 3.480 16 O -0.554 6.554 17 C -0.095 4.095 18 H 0.083 0.917 19 C -0.116 4.116 20 C -0.096 4.096 21 C 0.065 3.935 22 H 0.052 0.948 23 C -0.108 4.108 24 C -0.086 4.086 25 H 0.094 0.906 26 C -0.133 4.133 27 C 0.048 3.952 28 N -0.517 5.517 29 C 0.085 3.915 30 H 0.038 0.962 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.022 0.978 40 H 0.027 0.973 41 H 0.266 0.734 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.042 0.958 45 H 0.073 0.927 46 H 0.059 0.941 47 H 0.086 0.914 48 H 0.061 0.939 49 H 0.060 0.940 50 H 0.035 0.965 51 H 0.070 0.930 52 H 0.043 0.957 53 H 0.049 0.951 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.001 -2.836 -9.026 13.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.121 4.121 3 C -0.192 4.192 4 C 0.005 3.995 5 N -0.337 5.337 6 C 0.132 3.868 7 C -0.568 4.568 8 H 0.065 0.935 9 C -0.174 4.174 10 N -0.558 5.558 11 Si 0.772 3.228 12 H -0.198 1.198 13 H -0.207 1.207 14 H -0.203 1.203 15 C 0.308 3.692 16 O -0.433 6.433 17 C -0.116 4.116 18 H 0.101 0.899 19 C -0.154 4.154 20 C -0.134 4.134 21 C -0.043 4.043 22 H 0.070 0.930 23 C -0.146 4.146 24 C -0.104 4.104 25 H 0.112 0.888 26 C -0.190 4.190 27 C -0.079 4.079 28 N -0.242 5.242 29 C -0.044 4.044 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.040 0.960 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.061 0.939 45 H 0.091 0.909 46 H 0.078 0.922 47 H 0.104 0.896 48 H 0.080 0.920 49 H 0.079 0.921 50 H 0.054 0.946 51 H 0.088 0.912 52 H 0.061 0.939 53 H 0.067 0.933 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.455 -2.138 -9.128 14.043 hybrid contribution -0.805 -0.825 1.039 1.551 sum 9.650 -2.963 -8.089 12.936 Atomic orbital electron populations 1.21790 0.94808 1.01116 1.01729 1.21384 0.96296 0.97084 0.97352 1.21694 1.00806 0.94101 1.02581 1.21315 0.99207 0.81086 0.97885 1.48219 1.25835 1.07798 1.51833 1.19119 0.81907 0.94602 0.91133 1.21593 0.95498 1.43553 0.96126 0.93496 1.25511 0.94712 0.95333 1.01819 1.70009 1.02006 1.46421 1.37321 0.85695 0.78171 0.78022 0.80951 1.19790 1.20660 1.20295 1.20547 0.83467 0.87711 0.77457 1.90610 1.23074 1.78932 1.50687 1.21336 1.00432 0.92683 0.97163 0.89859 1.21605 0.96556 0.99714 0.97508 1.21393 0.94670 1.00215 0.97105 1.22411 0.96334 0.93510 0.92095 0.93021 1.22235 0.93565 1.01971 0.96820 1.22097 0.94498 0.98995 0.94842 0.88773 1.21720 0.98450 0.97260 1.01620 1.22988 0.93241 0.98195 0.93484 1.63763 1.04789 1.49097 1.06513 1.21689 0.88157 0.98736 0.95794 0.94287 0.92899 0.91538 0.93034 0.92812 0.91242 0.91999 0.91448 0.92601 0.95997 0.95486 0.92516 0.90721 0.91130 0.93907 0.90851 0.92178 0.89586 0.91977 0.92129 0.94566 0.91202 0.93878 0.93324 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 8.40 71.98 0.60 -3.77 16 2 C -0.10 -3.32 3.08 -10.79 -0.03 -3.36 16 3 C -0.13 -3.48 9.19 71.98 0.66 -2.82 16 4 C 0.13 4.98 4.83 86.38 0.42 5.39 16 5 N -0.61 -25.96 2.22 -826.16 -1.83 -27.79 16 6 C 0.25 12.04 4.07 85.63 0.35 12.39 16 7 C -0.53 -27.21 7.18 25.60 0.18 -27.03 16 8 H 0.05 2.51 7.81 -2.91 -0.02 2.49 16 9 C 0.03 1.37 5.46 84.65 0.46 1.84 16 10 N -0.92 -49.91 13.29 21.45 0.28 -49.62 16 11 Si 0.95 41.77 29.54 68.60 2.03 43.79 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 14 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 15 C 0.52 21.92 5.96 87.66 0.52 22.44 16 16 O -0.55 -25.10 14.40 -3.05 -0.04 -25.14 16 17 C -0.09 -3.53 2.19 -11.39 -0.02 -3.56 16 18 H 0.08 3.22 6.25 -2.39 -0.01 3.20 16 19 C -0.12 -4.28 5.31 30.76 0.16 -4.12 16 20 C -0.10 -3.23 5.40 30.57 0.17 -3.06 16 21 C 0.06 1.84 2.47 44.40 0.11 1.95 16 22 H 0.05 1.37 7.97 -2.39 -0.02 1.35 16 23 C -0.11 -2.56 6.30 31.36 0.20 -2.36 16 24 C -0.09 -1.84 3.69 -9.36 -0.03 -1.88 16 25 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 26 C -0.13 -2.95 8.94 71.98 0.64 -2.30 16 27 C 0.05 1.22 6.29 86.93 0.55 1.77 16 28 N -0.52 -16.21 3.26 -863.01 -2.81 -19.03 16 29 C 0.09 2.73 5.11 86.75 0.44 3.17 16 30 H 0.04 1.41 6.24 -2.38 -0.01 1.40 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 2.66 8.03 -2.39 -0.02 2.64 16 38 H 0.06 2.25 7.52 -2.39 -0.02 2.23 16 39 H 0.02 1.10 6.43 -2.39 -0.02 1.09 16 40 H 0.03 1.35 5.69 -2.39 -0.01 1.33 16 41 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 42 H 0.07 3.27 5.40 -2.39 -0.01 3.26 16 43 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.04 1.71 7.42 -2.39 -0.02 1.69 16 45 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.06 1.59 7.59 -2.39 -0.02 1.57 16 47 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 50 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.07 1.84 7.88 -2.38 -0.02 1.82 16 52 H 0.04 0.96 8.13 -2.39 -0.02 0.95 16 53 H 0.05 1.37 7.98 -2.39 -0.02 1.35 16 54 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -58.94 400.54 3.83 -55.11 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 0.83 Total: 27.98 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 5.38 Total: -5.29 kcal Atomic # 7 Polarization: -92.08 SS G_CDS: -4.36 Total: -96.44 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.04 Total: -25.14 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -58.94 3.83 -55.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548633596.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.795 kcal (2) G-P(sol) polarization free energy of solvation -58.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds