Wall clock time and date at job start Tue Mar 31 2020 15:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47173 * 2 1 4 4 C 1.53003 * 109.46783 * 119.99118 * 2 1 3 5 5 N 1.46501 * 109.46757 * 175.39312 * 4 2 1 6 6 C 1.46499 * 120.00493 * 274.28650 * 5 4 2 7 7 C 1.50707 * 109.46894 * 267.07974 * 6 5 4 8 8 H 1.07994 * 120.00431 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99576 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99820 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99848 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47217 * 89.99663 * 11 9 7 13 13 H 1.48501 * 109.46974 * 210.00146 * 11 9 7 14 14 H 1.48501 * 109.46688 * 329.99937 * 11 9 7 15 15 C 1.34779 * 119.99786 * 94.29358 * 5 4 2 16 16 O 1.21279 * 120.00038 * 3.97984 * 15 5 4 17 17 C 1.50695 * 120.00291 * 183.98739 * 15 5 4 18 18 H 1.09001 * 109.22524 * 27.81792 * 17 15 5 19 19 C 1.52819 * 109.23130 * 268.45143 * 17 15 5 20 20 C 1.53660 * 110.61127 * 185.93677 * 19 17 15 21 21 C 1.52245 * 107.57291 * 56.12321 * 20 19 17 22 22 H 1.09001 * 110.26140 * 58.11616 * 21 20 19 23 23 C 1.53250 * 113.91416 * 182.73231 * 21 20 19 24 24 C 1.54991 * 104.18597 * 144.43864 * 23 21 20 25 25 H 1.09001 * 110.34898 * 238.53838 * 24 23 21 26 26 C 1.52999 * 110.35026 * 116.37097 * 24 23 21 27 27 C 1.55191 * 104.93402 * 357.50654 * 24 23 21 28 28 N 1.46996 * 103.53558 * 336.04232 * 27 24 23 29 29 C 1.45669 * 116.59621 * 162.44246 * 28 27 24 30 30 H 1.09001 * 109.47507 * 300.00587 * 1 2 3 31 31 H 1.09003 * 109.46981 * 60.00972 * 1 2 3 32 32 H 1.08997 * 109.47165 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.47454 * 239.99289 * 2 1 3 34 34 H 1.08994 * 109.47615 * 65.82927 * 3 2 1 35 35 H 1.08998 * 109.47390 * 185.83792 * 3 2 1 36 36 H 1.09007 * 109.46941 * 305.83027 * 3 2 1 37 37 H 1.09003 * 109.46625 * 55.40049 * 4 2 1 38 38 H 1.09000 * 109.47653 * 295.39836 * 4 2 1 39 39 H 1.09001 * 109.46913 * 27.07442 * 6 5 4 40 40 H 1.09002 * 109.47374 * 147.08211 * 6 5 4 41 41 H 0.97001 * 119.99405 * 180.02562 * 10 9 7 42 42 H 1.09004 * 109.24673 * 306.23197 * 19 17 15 43 43 H 1.09000 * 109.24978 * 65.67913 * 19 17 15 44 44 H 1.08995 * 109.84308 * 175.64490 * 20 19 17 45 45 H 1.09000 * 109.83569 * 296.60857 * 20 19 17 46 46 H 1.09002 * 110.48924 * 263.10969 * 23 21 20 47 47 H 1.08994 * 110.48937 * 25.76584 * 23 21 20 48 48 H 1.08998 * 109.47434 * 60.00004 * 26 24 23 49 49 H 1.08995 * 109.47428 * 180.02562 * 26 24 23 50 50 H 1.09006 * 109.47021 * 300.00060 * 26 24 23 51 51 H 1.09005 * 110.61428 * 94.51306 * 27 24 23 52 52 H 1.09001 * 110.61694 * 217.33813 * 27 24 23 53 53 H 1.09001 * 109.79126 * 57.69945 * 29 28 27 54 54 H 1.08994 * 109.79356 * 296.90405 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5007 -0.8179 1.1952 6 6 4.1353 -1.9302 0.4838 7 6 4.4115 -3.0527 1.4507 8 1 4.1418 -2.9478 2.4912 9 6 5.0087 -4.2136 1.0070 10 7 5.3376 -4.3410 -0.2600 11 14 5.3505 -5.6052 2.2053 12 1 4.1803 -6.5182 2.2504 13 1 6.5497 -6.3590 1.7595 14 1 5.5932 -5.0444 3.5588 15 6 4.2608 0.1163 1.8001 16 8 3.7373 0.9965 2.4498 17 6 5.7613 0.0674 1.6691 18 1 6.0238 -0.4149 0.7275 19 6 6.3416 -0.7429 2.8275 20 6 7.8772 -0.6902 2.8088 21 6 8.2872 0.7756 2.8432 22 1 7.8802 1.2607 3.7304 23 6 9.8012 0.9993 2.7626 24 6 9.9495 2.2979 1.9297 25 1 10.5472 2.1100 1.0378 26 6 10.5887 3.4018 2.7746 27 6 8.4998 2.6895 1.5378 28 7 7.7693 1.4156 1.6048 29 6 6.3168 1.4997 1.6762 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8898 34 1 1.7644 1.9253 0.9375 35 1 3.1249 1.4443 -0.1045 36 1 1.5939 1.9856 -0.8332 37 1 1.6107 -1.7222 1.2916 38 1 1.7455 -0.1618 2.1374 39 1 3.4701 -2.2846 -0.3037 40 1 5.0728 -1.5918 0.0426 41 1 5.7573 -5.1579 -0.5722 42 1 5.9793 -0.3324 3.7701 43 1 6.0170 -1.7797 2.7389 44 1 8.2758 -1.2064 3.6820 45 1 8.2522 -1.1579 1.8984 46 1 10.2203 1.1355 3.7595 47 1 10.2838 0.1638 2.2556 48 1 11.5749 3.0790 3.1082 49 1 10.6858 4.3074 2.1759 50 1 9.9605 3.6055 3.6418 51 1 8.0893 3.4043 2.2510 52 1 8.4724 3.0982 0.5277 53 1 5.9361 2.0476 0.8142 54 1 6.0211 2.0057 2.5951 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548633599.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:22 Heat of formation + Delta-G solvation = -70.946909 kcal Electronic energy + Delta-G solvation = -29777.344920 eV Core-core repulsion = 26133.132938 eV Total energy + Delta-G solvation = -3644.211982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.61531 -40.36712 -37.55063 -36.42416 -35.59290 -34.14679 -33.35218 -32.01467 -29.34656 -28.50635 -28.03639 -27.59917 -26.48698 -24.91355 -23.73232 -23.12905 -21.33348 -21.07602 -20.63046 -19.70541 -18.45093 -18.12532 -17.23806 -16.64344 -16.37923 -16.29769 -16.16459 -15.75210 -15.51334 -15.02464 -14.86498 -14.50796 -14.44912 -14.29611 -13.86849 -13.75199 -13.57837 -13.41827 -13.31063 -13.23244 -13.14305 -13.07196 -12.83122 -12.72159 -12.63788 -12.45553 -12.27773 -12.01978 -11.99489 -11.86026 -11.71018 -11.69727 -11.58673 -11.53684 -11.40321 -11.31822 -11.13967 -10.63290 -10.40174 -9.40215 -9.36339 -8.16874 -6.29392 1.41262 1.44038 1.52626 1.77430 2.27576 2.45275 3.03855 3.13441 3.53209 3.67376 3.82539 3.88988 3.96605 4.01207 4.03888 4.08055 4.18329 4.21620 4.35809 4.44797 4.48674 4.52035 4.64369 4.65565 4.67644 4.69381 4.74779 4.78080 4.80988 4.85891 4.87907 4.89012 4.95959 4.99423 5.04446 5.05754 5.07111 5.12391 5.18811 5.24370 5.29078 5.33338 5.39254 5.40310 5.43754 5.45814 5.48313 5.68528 5.89494 5.99261 6.09585 6.22647 6.59226 6.84690 7.33606 7.44921 8.88824 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.009450 B = 0.005006 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2962.228689 B = 5591.464837 C = 7933.975578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.108 4.108 3 C -0.126 4.126 4 C 0.119 3.881 5 N -0.595 5.595 6 C 0.255 3.745 7 C -0.534 4.534 8 H 0.051 0.949 9 C 0.028 3.972 10 N -0.918 5.918 11 Si 0.948 3.052 12 H -0.277 1.277 13 H -0.281 1.281 14 H -0.269 1.269 15 C 0.522 3.478 16 O -0.591 6.591 17 C -0.087 4.087 18 H 0.084 0.916 19 C -0.107 4.107 20 C -0.095 4.095 21 C 0.063 3.937 22 H 0.044 0.956 23 C -0.108 4.108 24 C -0.089 4.089 25 H 0.083 0.917 26 C -0.138 4.138 27 C 0.045 3.955 28 N -0.534 5.534 29 C 0.089 3.911 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.025 0.975 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.018 0.982 40 H 0.027 0.973 41 H 0.267 0.733 42 H 0.046 0.954 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.063 0.937 50 H 0.050 0.950 51 H 0.040 0.960 52 H 0.081 0.919 53 H 0.066 0.934 54 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.261 11.622 3.027 13.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 C -0.184 4.184 4 C -0.004 4.004 5 N -0.324 5.324 6 C 0.134 3.866 7 C -0.573 4.573 8 H 0.069 0.931 9 C -0.173 4.173 10 N -0.557 5.557 11 Si 0.774 3.226 12 H -0.203 1.203 13 H -0.206 1.206 14 H -0.194 1.194 15 C 0.311 3.689 16 O -0.474 6.474 17 C -0.109 4.109 18 H 0.102 0.898 19 C -0.145 4.145 20 C -0.133 4.133 21 C -0.045 4.045 22 H 0.062 0.938 23 C -0.146 4.146 24 C -0.108 4.108 25 H 0.102 0.898 26 C -0.196 4.196 27 C -0.083 4.083 28 N -0.259 5.259 29 C -0.040 4.040 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.036 0.964 40 H 0.044 0.956 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.083 0.917 46 H 0.103 0.897 47 H 0.092 0.908 48 H 0.088 0.912 49 H 0.082 0.918 50 H 0.069 0.931 51 H 0.058 0.942 52 H 0.100 0.900 53 H 0.085 0.915 54 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 5.127 11.656 2.737 13.024 hybrid contribution -0.373 -0.714 0.917 1.220 sum 4.754 10.942 3.654 12.477 Atomic orbital electron populations 1.21699 0.92570 1.02334 1.02591 1.21452 0.97456 0.96299 0.97502 1.21647 0.99399 0.95814 1.01508 1.21520 0.79883 1.00482 0.98529 1.48195 1.06564 1.25314 1.52354 1.19068 0.92754 0.83159 0.91593 1.21530 1.40143 1.00373 0.95217 0.93068 1.25538 0.95056 1.00240 0.96447 1.70010 1.42005 1.28182 1.15471 0.85704 0.77819 0.79533 0.79583 1.20290 1.20606 1.19364 1.20653 0.89912 0.80461 0.77848 1.90540 1.75602 1.38034 1.43222 1.21146 0.90491 0.97395 1.01844 0.89768 1.21497 0.96706 1.00815 0.95488 1.21425 0.93631 0.95663 1.02538 1.22459 0.96222 0.94923 0.90893 0.93780 1.22271 0.93283 0.98113 1.00961 1.22122 0.94496 0.95069 0.99103 0.89829 1.21820 1.00759 0.97757 0.99253 1.22991 0.93983 0.89954 1.01364 1.63772 1.04193 1.21075 1.36856 1.21547 0.87954 0.94293 1.00161 0.92204 0.91078 0.92177 0.92177 0.93298 0.95546 0.91382 0.91197 0.91330 0.96368 0.95566 0.92420 0.93527 0.90892 0.89989 0.91698 0.89659 0.90824 0.91242 0.91830 0.93089 0.94189 0.90017 0.91509 0.94990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 9.19 71.98 0.66 -2.65 16 2 C -0.11 -3.43 3.13 -10.79 -0.03 -3.47 16 3 C -0.13 -4.02 8.05 71.98 0.58 -3.44 16 4 C 0.12 4.49 4.97 86.38 0.43 4.92 16 5 N -0.60 -25.67 2.28 -826.13 -1.89 -27.56 16 6 C 0.26 12.34 5.01 85.64 0.43 12.77 16 7 C -0.53 -27.50 7.42 25.60 0.19 -27.31 16 8 H 0.05 2.70 7.65 -2.91 -0.02 2.68 16 9 C 0.03 1.45 5.46 84.66 0.46 1.91 16 10 N -0.92 -50.33 13.29 21.45 0.28 -50.05 16 11 Si 0.95 41.56 29.54 68.60 2.03 43.59 16 12 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 14 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 15 C 0.52 22.38 5.28 87.66 0.46 22.84 16 16 O -0.59 -26.77 14.75 -3.03 -0.04 -26.81 16 17 C -0.09 -3.44 2.12 -11.39 -0.02 -3.46 16 18 H 0.08 3.65 5.84 -2.39 -0.01 3.64 16 19 C -0.11 -4.07 5.20 30.76 0.16 -3.92 16 20 C -0.09 -2.98 5.64 30.57 0.17 -2.81 16 21 C 0.06 1.74 2.49 44.40 0.11 1.85 16 22 H 0.04 1.26 8.00 -2.39 -0.02 1.24 16 23 C -0.11 -2.30 6.29 31.36 0.20 -2.10 16 24 C -0.09 -1.71 3.69 -9.36 -0.03 -1.75 16 25 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 26 C -0.14 -2.04 8.96 71.98 0.64 -1.40 16 27 C 0.04 1.06 6.24 87.04 0.54 1.60 16 28 N -0.53 -16.04 4.83 -864.48 -4.18 -20.22 16 29 C 0.09 3.09 4.80 86.75 0.42 3.51 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 34 H 0.05 1.62 7.97 -2.39 -0.02 1.60 16 35 H 0.03 0.94 6.94 -2.39 -0.02 0.92 16 36 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.07 2.65 8.10 -2.39 -0.02 2.63 16 38 H 0.07 2.65 7.25 -2.39 -0.02 2.63 16 39 H 0.02 0.94 8.05 -2.39 -0.02 0.92 16 40 H 0.03 1.36 5.81 -2.39 -0.01 1.34 16 41 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 42 H 0.05 1.77 8.13 -2.38 -0.02 1.75 16 43 H 0.07 3.19 5.86 -2.39 -0.01 3.18 16 44 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.08 1.51 7.73 -2.39 -0.02 1.49 16 47 H 0.07 1.59 8.00 -2.39 -0.02 1.57 16 48 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.05 0.79 8.11 -2.38 -0.02 0.77 16 51 H 0.04 0.94 7.86 -2.38 -0.02 0.92 16 52 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 53 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 54 H 0.03 1.16 7.65 -2.39 -0.02 1.15 16 Total: -1.00 -58.47 404.93 2.40 -56.07 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.83 Total: 27.88 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 5.37 Total: -2.90 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -5.78 Total: -97.83 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.04 Total: -26.81 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -58.47 2.40 -56.07 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548633599.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.874 kcal (2) G-P(sol) polarization free energy of solvation -58.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds