Wall clock time and date at job start Tue Mar 31 2020 15:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.38677 * 2 1 4 4 C 1.55331 * 110.34000 * 237.78245 * 2 1 3 5 5 C 1.53921 * 102.08640 * 218.92487 * 4 2 1 6 6 H 1.09002 * 111.00636 * 280.64052 * 5 4 2 7 7 C 1.52372 * 113.26456 * 155.07184 * 5 4 2 8 8 C 1.53643 * 107.59662 * 185.06790 * 7 5 4 9 9 C 1.52821 * 110.61180 * 56.40467 * 8 7 5 10 10 H 1.09004 * 109.23973 * 185.87015 * 9 8 7 11 11 C 1.50702 * 109.24214 * 66.43916 * 9 8 7 12 12 O 1.21283 * 120.00262 * 239.99942 * 11 9 8 13 13 N 1.34777 * 119.99928 * 59.71848 * 11 9 8 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 9 15 15 C 1.52997 * 109.47555 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.47337 * 300.00682 * 15 14 13 17 17 C 1.53001 * 109.46903 * 60.00409 * 15 14 13 18 18 C 1.53000 * 109.47273 * 179.97438 * 15 14 13 19 19 C 1.50701 * 109.46983 * 180.02562 * 18 15 14 20 20 H 1.07998 * 120.00145 * 0.02562 * 19 18 15 21 21 C 1.37878 * 120.00161 * 180.02562 * 19 18 15 22 22 N 1.31515 * 119.99703 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00027 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46971 * 90.00441 * 23 21 19 25 25 H 1.48505 * 109.46977 * 209.99978 * 23 21 19 26 26 H 1.48493 * 109.47395 * 329.99873 * 23 21 19 27 27 C 1.53636 * 110.65268 * 306.13785 * 9 8 7 28 28 N 1.45536 * 107.85677 * 57.12536 * 27 9 8 29 29 C 1.46336 * 117.21747 * 174.44522 * 28 27 9 30 30 H 1.09002 * 109.47177 * 182.21700 * 1 2 3 31 31 H 1.09000 * 109.47063 * 302.21487 * 1 2 3 32 32 H 1.09001 * 109.46872 * 62.21551 * 1 2 3 33 33 H 1.09002 * 110.90594 * 100.72619 * 4 2 1 34 34 H 1.08999 * 110.93530 * 337.13673 * 4 2 1 35 35 H 1.08998 * 109.83107 * 65.54414 * 7 5 4 36 36 H 1.08998 * 109.88443 * 304.61777 * 7 5 4 37 37 H 1.09000 * 109.24326 * 296.11491 * 8 7 5 38 38 H 1.08993 * 109.21605 * 176.67894 * 8 7 5 39 39 H 0.97000 * 120.00317 * 0.28382 * 13 11 9 40 40 H 1.08998 * 109.47134 * 300.00670 * 14 13 11 41 41 H 1.09002 * 109.46857 * 59.99862 * 14 13 11 42 42 H 1.08993 * 109.47298 * 59.99049 * 16 15 14 43 43 H 1.09001 * 109.47411 * 179.97438 * 16 15 14 44 44 H 1.09002 * 109.46412 * 299.99812 * 16 15 14 45 45 H 1.08992 * 109.47503 * 59.99902 * 17 15 14 46 46 H 1.09000 * 109.47703 * 180.02562 * 17 15 14 47 47 H 1.09007 * 109.46685 * 300.00061 * 17 15 14 48 48 H 1.08992 * 109.47143 * 300.00104 * 18 15 14 49 49 H 1.08997 * 109.46799 * 60.00311 * 18 15 14 50 50 H 0.97003 * 120.00173 * 179.97438 * 22 21 19 51 51 H 1.08996 * 109.78716 * 176.71928 * 27 9 8 52 52 H 1.09001 * 109.77604 * 297.53985 * 27 9 8 53 53 H 1.09004 * 110.15042 * 32.81458 * 29 28 27 54 54 H 1.08995 * 110.21790 * 271.09291 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0218 0.0000 4 6 2.0699 -0.7765 -1.2322 5 6 3.2798 -1.5207 -0.6394 6 1 4.1410 -0.8583 -0.5510 7 6 3.6429 -2.7862 -1.4064 8 6 4.7730 -3.4874 -0.6372 9 6 4.3486 -3.7698 0.8035 10 1 5.1983 -4.1706 1.3562 11 6 3.2337 -4.7838 0.8031 12 8 2.1550 -4.4993 1.2791 13 7 3.4335 -6.0049 0.2687 14 6 2.3479 -6.9885 0.2629 15 6 2.8342 -8.2810 -0.3956 16 6 3.2659 -7.9894 -1.8341 17 6 4.0227 -8.8380 0.3906 18 6 1.7005 -9.3085 -0.4011 19 6 2.1798 -10.5818 -1.0492 20 1 3.1918 -10.6515 -1.4197 21 6 1.3263 -11.6580 -1.1691 22 7 0.0937 -11.5731 -0.7184 23 14 1.9206 -13.2365 -1.9718 24 1 2.5014 -14.1297 -0.9372 25 1 0.7769 -13.9186 -2.6291 26 1 2.9558 -12.9163 -2.9871 27 6 3.8622 -2.4829 1.4873 28 7 2.7703 -1.9405 0.6925 29 6 2.0679 -0.7738 1.2281 30 1 -0.3634 -1.0269 0.0398 31 1 -0.3633 0.5478 0.8695 32 1 -0.3633 0.4791 -0.9092 33 1 2.3828 -0.0894 -2.0184 34 1 1.3257 -1.4797 -1.6061 35 1 3.9835 -2.5263 -2.4086 36 1 2.7754 -3.4432 -1.4695 37 1 5.6555 -2.8477 -0.6330 38 1 5.0136 -4.4283 -1.1319 39 1 4.2962 -6.2325 -0.1119 40 1 2.0406 -7.1966 1.2878 41 1 1.5009 -6.5915 -0.2967 42 1 4.0736 -7.2576 -1.8298 43 1 3.6128 -8.9102 -2.3032 44 1 2.4191 -7.5926 -2.3942 45 1 3.7153 -9.0458 1.4154 46 1 4.3696 -9.7587 -0.0787 47 1 4.8305 -8.1061 0.3949 48 1 1.3935 -9.5162 0.6239 49 1 0.8535 -8.9120 -0.9608 50 1 -0.5070 -12.3300 -0.8030 51 1 3.5090 -2.7103 2.4930 52 1 4.6771 -1.7606 1.5362 53 1 2.7576 -0.1474 1.7941 54 1 1.2413 -1.0908 1.8638 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548705166.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:55 Heat of formation + Delta-G solvation = -77.544470 kcal Electronic energy + Delta-G solvation = -29016.864256 eV Core-core repulsion = 25372.366182 eV Total energy + Delta-G solvation = -3644.498074 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.59971 -40.10278 -38.54087 -36.27470 -35.16612 -33.92086 -33.16559 -32.02999 -29.11877 -28.36373 -27.94207 -27.81816 -26.77607 -25.01344 -23.68364 -23.20333 -21.63946 -21.01502 -20.43868 -19.53298 -18.36725 -17.71317 -17.05836 -16.87546 -16.49781 -16.35494 -15.97915 -15.59482 -15.21718 -14.93366 -14.84907 -14.63832 -14.34802 -14.11010 -14.05831 -13.94125 -13.92800 -13.57991 -13.46506 -13.20327 -12.88171 -12.77805 -12.71328 -12.60548 -12.53785 -12.32662 -12.21245 -12.01597 -11.96813 -11.92514 -11.61652 -11.53895 -11.51312 -11.26759 -11.13698 -11.04353 -10.86155 -10.51248 -10.44441 -9.88050 -9.00498 -8.13494 -6.21666 1.42554 1.43286 1.53689 1.93791 2.36813 2.47279 3.08314 3.20797 3.55072 3.68306 3.80797 3.95182 3.97388 4.01704 4.10043 4.14087 4.21690 4.25536 4.35493 4.42770 4.51569 4.61452 4.67066 4.71612 4.72241 4.74736 4.76037 4.80402 4.87248 4.88280 4.92529 4.98567 5.00778 5.09428 5.12501 5.13970 5.14776 5.18870 5.21683 5.28273 5.43449 5.45160 5.46563 5.50845 5.52532 5.55802 5.66591 5.81993 5.90524 6.21455 6.30994 6.45685 6.80447 6.94043 7.46146 7.54656 8.99235 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.021839 B = 0.002632 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.822455 B =10636.125117 C =11004.411503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 H 0.092 0.908 4 C -0.111 4.111 5 C 0.066 3.934 6 H 0.069 0.931 7 C -0.109 4.109 8 C -0.107 4.107 9 C -0.098 4.098 10 H 0.125 0.875 11 C 0.512 3.488 12 O -0.567 6.567 13 N -0.716 5.716 14 C 0.148 3.852 15 C -0.063 4.063 16 C -0.118 4.118 17 C -0.120 4.120 18 C 0.040 3.960 19 C -0.512 4.512 20 H 0.074 0.926 21 C -0.007 4.007 22 N -0.940 5.940 23 Si 0.960 3.040 24 H -0.275 1.275 25 H -0.290 1.290 26 H -0.258 1.258 27 C 0.083 3.917 28 N -0.545 5.545 29 C 0.057 3.943 30 H 0.035 0.965 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.038 0.962 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.409 0.591 40 H 0.037 0.963 41 H 0.035 0.965 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.033 0.967 45 H 0.034 0.966 46 H 0.056 0.944 47 H 0.071 0.929 48 H -0.017 1.017 49 H -0.018 1.018 50 H 0.259 0.741 51 H 0.059 0.941 52 H 0.061 0.939 53 H 0.044 0.956 54 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.037 24.758 -0.505 28.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 H 0.110 0.890 4 C -0.149 4.149 5 C -0.042 4.042 6 H 0.087 0.913 7 C -0.147 4.147 8 C -0.144 4.144 9 C -0.119 4.119 10 H 0.142 0.858 11 C 0.300 3.700 12 O -0.445 6.445 13 N -0.370 5.370 14 C 0.024 3.976 15 C -0.064 4.064 16 C -0.176 4.176 17 C -0.177 4.177 18 C 0.003 3.997 19 C -0.550 4.550 20 H 0.092 0.908 21 C -0.204 4.204 22 N -0.581 5.581 23 Si 0.785 3.215 24 H -0.201 1.201 25 H -0.216 1.216 26 H -0.182 1.182 27 C -0.046 4.046 28 N -0.270 5.270 29 C -0.070 4.070 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.057 0.943 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.247 0.753 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.001 0.999 49 H 0.001 0.999 50 H 0.068 0.932 51 H 0.078 0.922 52 H 0.079 0.921 53 H 0.063 0.937 54 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.772 24.463 -0.138 27.597 hybrid contribution -0.090 -0.925 0.027 0.930 sum 12.682 23.538 -0.111 26.737 Atomic orbital electron populations 1.21769 0.94715 1.00965 1.02150 1.22230 0.96229 0.99144 0.93788 0.88999 1.22462 0.96816 0.98500 0.97125 1.22638 0.96480 0.95420 0.89639 0.91281 1.21540 0.98074 0.95938 0.99100 1.21602 0.98749 1.02332 0.91763 1.21555 0.96542 0.93836 0.99992 0.85769 1.21106 0.89849 0.82349 0.76720 1.90691 1.28240 1.78755 1.46779 1.46001 1.15946 1.13227 1.61853 1.21037 0.89467 0.88342 0.98784 1.20685 0.96903 0.92600 0.96173 1.21661 1.00148 1.01202 0.94552 1.21682 0.96453 1.00980 0.98626 1.18967 0.92785 0.93524 0.94471 1.21597 0.98449 0.97788 1.37195 0.90801 1.25981 0.95034 1.02661 0.96675 1.70135 1.07058 1.32247 1.48706 0.85522 0.77875 0.79295 0.78823 1.20121 1.21614 1.18186 1.21672 0.92088 0.94475 0.96321 1.62594 1.27819 1.32400 1.04226 1.22525 0.97525 0.90111 0.96871 0.94563 0.92133 0.91686 0.89315 0.92764 0.89523 0.94319 0.88331 0.90324 0.75341 0.94458 0.94670 0.91033 0.92599 0.94792 0.94665 0.92537 0.90999 0.99904 0.99948 0.93201 0.92240 0.92114 0.93742 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.93 71.98 0.64 -1.82 16 2 C -0.10 -1.60 3.62 -9.38 -0.03 -1.64 16 3 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 4 C -0.11 -1.94 6.15 31.71 0.19 -1.75 16 5 C 0.07 1.17 2.62 44.68 0.12 1.28 16 6 H 0.07 0.98 8.07 -2.39 -0.02 0.96 16 7 C -0.11 -1.97 5.44 30.60 0.17 -1.80 16 8 C -0.11 -1.52 5.34 30.75 0.16 -1.35 16 9 C -0.10 -1.83 2.96 -11.38 -0.03 -1.86 16 10 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 11 C 0.51 14.89 6.18 87.66 0.54 15.44 16 12 O -0.57 -22.29 15.21 -3.04 -0.05 -22.33 16 13 N -0.72 -20.05 4.80 -463.06 -2.22 -22.27 16 14 C 0.15 5.54 4.56 86.38 0.39 5.93 16 15 C -0.06 -2.43 0.54 -52.18 -0.03 -2.46 16 16 C -0.12 -4.02 8.05 71.98 0.58 -3.44 16 17 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 18 C 0.04 2.09 4.04 29.85 0.12 2.21 16 19 C -0.51 -27.77 7.65 25.60 0.20 -27.57 16 20 H 0.07 3.72 5.68 -2.91 -0.02 3.70 16 21 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 22 N -0.94 -58.09 13.29 21.45 0.28 -57.80 16 23 Si 0.96 43.90 29.54 68.60 2.03 45.92 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 26 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 27 C 0.08 1.67 4.84 86.77 0.42 2.09 16 28 N -0.55 -12.52 3.54 -865.94 -3.06 -15.58 16 29 C 0.06 1.19 6.51 87.03 0.57 1.75 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.05 1.20 7.85 -2.39 -0.02 1.19 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.04 1.00 7.63 -2.39 -0.02 0.98 16 37 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 1.01 7.34 -2.39 -0.02 1.00 16 39 H 0.41 8.78 5.48 -92.71 -0.51 8.27 16 40 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.07 1.80 6.86 -2.39 -0.02 1.79 16 43 H 0.05 2.02 6.62 -2.39 -0.02 2.00 16 44 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.06 2.03 6.62 -2.39 -0.02 2.01 16 47 H 0.07 1.80 6.86 -2.38 -0.02 1.79 16 48 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 49 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 50 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 51 H 0.06 1.42 8.02 -2.39 -0.02 1.40 16 52 H 0.06 0.90 8.06 -2.39 -0.02 0.88 16 53 H 0.04 0.78 8.04 -2.38 -0.02 0.76 16 54 H 0.05 1.36 7.71 -2.39 -0.02 1.34 16 Total: -1.00 -72.78 401.77 2.37 -70.41 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.34 Total: 20.05 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 5.05 Total: -18.39 kcal Atomic # 7 Polarization: -90.66 SS G_CDS: -5.00 Total: -95.66 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.05 Total: -22.33 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -72.78 2.37 -70.41 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548705166.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.134 kcal (2) G-P(sol) polarization free energy of solvation -72.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds