Wall clock time and date at job start Tue Mar 31 2020 15:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.38300 * 2 1 4 4 C 1.55479 * 110.35653 * 237.70257 * 2 1 3 5 5 C 1.53929 * 102.08484 * 218.90357 * 4 2 1 6 6 H 1.09005 * 111.53785 * 281.11507 * 5 4 2 7 7 C 1.52368 * 113.26586 * 155.11630 * 5 4 2 8 8 C 1.53628 * 107.59774 * 185.06617 * 7 5 4 9 9 C 1.52821 * 110.61465 * 56.40762 * 8 7 5 10 10 H 1.09003 * 109.24437 * 66.43280 * 9 8 7 11 11 C 1.50696 * 109.21086 * 185.85664 * 9 8 7 12 12 O 1.21283 * 120.00111 * 121.13818 * 11 9 8 13 13 N 1.34779 * 119.99913 * 301.13372 * 11 9 8 14 14 C 1.46501 * 119.99804 * 180.02562 * 13 11 9 15 15 C 1.53008 * 109.46937 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.46837 * 299.99907 * 15 14 13 17 17 C 1.53005 * 109.47087 * 59.99562 * 15 14 13 18 18 C 1.52997 * 109.47184 * 179.97438 * 15 14 13 19 19 C 1.50703 * 109.47228 * 179.97438 * 18 15 14 20 20 H 1.08002 * 119.99660 * 359.97438 * 19 18 15 21 21 C 1.37875 * 120.00058 * 180.02562 * 19 18 15 22 22 N 1.31508 * 119.99876 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99742 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47188 * 90.00544 * 23 21 19 25 25 H 1.48511 * 109.46975 * 210.00213 * 23 21 19 26 26 H 1.48499 * 109.47321 * 329.99981 * 23 21 19 27 27 C 1.53641 * 110.64526 * 306.13327 * 9 8 7 28 28 N 1.45533 * 107.85507 * 57.13126 * 27 9 8 29 29 C 1.46339 * 117.21716 * 174.44534 * 28 27 9 30 30 H 1.08992 * 109.47253 * 299.23634 * 1 2 3 31 31 H 1.08997 * 109.46846 * 59.24498 * 1 2 3 32 32 H 1.09004 * 109.46931 * 179.23551 * 1 2 3 33 33 H 1.08996 * 110.87392 * 100.72166 * 4 2 1 34 34 H 1.08999 * 110.94079 * 337.11473 * 4 2 1 35 35 H 1.08999 * 109.83679 * 65.53829 * 7 5 4 36 36 H 1.09000 * 109.88583 * 304.61894 * 7 5 4 37 37 H 1.08999 * 109.24877 * 296.11314 * 8 7 5 38 38 H 1.09008 * 109.21866 * 176.67688 * 8 7 5 39 39 H 0.96992 * 119.99804 * 0.02562 * 13 11 9 40 40 H 1.09001 * 109.47095 * 299.99326 * 14 13 11 41 41 H 1.08992 * 109.47775 * 60.00119 * 14 13 11 42 42 H 1.08991 * 109.47647 * 59.99699 * 16 15 14 43 43 H 1.09000 * 109.46872 * 180.02562 * 16 15 14 44 44 H 1.09005 * 109.46789 * 299.99706 * 16 15 14 45 45 H 1.09000 * 109.46776 * 60.00314 * 17 15 14 46 46 H 1.09000 * 109.46799 * 179.97438 * 17 15 14 47 47 H 1.09000 * 109.46914 * 300.00305 * 17 15 14 48 48 H 1.09001 * 109.46925 * 300.00292 * 18 15 14 49 49 H 1.09003 * 109.46895 * 59.99461 * 18 15 14 50 50 H 0.97004 * 119.99748 * 179.97438 * 22 21 19 51 51 H 1.08993 * 109.78245 * 297.54186 * 27 9 8 52 52 H 1.08997 * 109.78309 * 176.72068 * 27 9 8 53 53 H 1.09002 * 110.15429 * 271.05819 * 29 28 27 54 54 H 1.09000 * 110.15540 * 32.73927 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0709 -0.7789 -1.2322 5 6 3.2812 -1.5216 -0.6381 6 1 4.1450 -0.8642 -0.5390 7 6 3.6455 -2.7876 -1.4037 8 6 4.7758 -3.4871 -0.6334 9 6 4.3510 -3.7686 0.8073 10 1 3.5451 -4.5026 0.8074 11 6 5.5262 -4.3214 1.5718 12 8 5.9319 -3.7462 2.5594 13 7 6.1263 -5.4550 1.1579 14 6 7.2684 -5.9926 1.9014 15 6 7.7588 -7.2749 1.2258 16 6 6.6294 -8.3068 1.2096 17 6 8.1858 -6.9635 -0.2101 18 6 8.9520 -7.8360 2.0018 19 6 9.4346 -9.0993 1.3367 20 1 8.9395 -9.4655 0.4495 21 6 10.5075 -9.7881 1.8615 22 7 10.9283 -10.8907 1.2814 23 14 11.3633 -9.1550 3.3965 24 1 10.7180 -9.7392 4.5996 25 1 12.7951 -9.5480 3.3628 26 1 11.2574 -7.6747 3.4475 27 6 3.8634 -2.4813 1.4897 28 7 2.7714 -1.9406 0.6940 29 6 2.0680 -0.7738 1.2282 30 1 -0.3633 0.5019 0.8967 31 1 -0.3633 0.5255 -0.8831 32 1 -0.3633 -1.0276 -0.0137 33 1 2.3836 -0.0924 -2.0189 34 1 1.3271 -1.4830 -1.6051 35 1 3.9864 -2.5284 -2.4061 36 1 2.7786 -3.4453 -1.4666 37 1 5.6578 -2.8468 -0.6294 38 1 5.0174 -4.4284 -1.1272 39 1 5.8020 -5.9148 0.3679 40 1 8.0732 -5.2576 1.9125 41 1 6.9644 -6.2140 2.9244 42 1 5.7796 -7.9068 0.6565 43 1 6.9789 -9.2204 0.7286 44 1 6.3252 -8.5286 2.2325 45 1 8.9904 -6.2283 -0.1985 46 1 8.5356 -7.8769 -0.6913 47 1 7.3360 -6.5634 -0.7632 48 1 9.7564 -7.1006 2.0131 49 1 8.6481 -8.0577 3.0249 50 1 11.6834 -11.3751 1.6504 51 1 4.6777 -1.7584 1.5382 52 1 3.5100 -2.7080 2.4955 53 1 1.2412 -1.0920 1.8632 54 1 2.7565 -0.1470 1.7948 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548705168.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:59 Heat of formation + Delta-G solvation = -81.975646 kcal Electronic energy + Delta-G solvation = -28286.624865 eV Core-core repulsion = 24641.934641 eV Total energy + Delta-G solvation = -3644.690224 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.58801 -40.38648 -38.72680 -36.39334 -35.23077 -34.02872 -33.27893 -32.10296 -29.74985 -28.47311 -27.98552 -27.87657 -26.74611 -24.61503 -23.66548 -23.16466 -21.44352 -21.03365 -20.55280 -19.73133 -18.90939 -18.08035 -17.20769 -16.76997 -16.56126 -16.21732 -15.90953 -15.72252 -15.46457 -15.21258 -15.04214 -14.75438 -14.37217 -14.25099 -14.12346 -14.03736 -14.02718 -13.74658 -13.45913 -13.17362 -13.12353 -12.92675 -12.84592 -12.60482 -12.31226 -12.29656 -12.17167 -12.09779 -11.88420 -11.78045 -11.61102 -11.52107 -11.51741 -11.45488 -11.26127 -11.19123 -10.93144 -10.71374 -10.68850 -10.05396 -9.32599 -8.23152 -6.22988 1.34472 1.37341 1.47155 1.62973 2.16236 2.37910 3.02189 3.12111 3.51521 3.54008 3.83207 3.88090 3.91704 3.96514 4.00744 4.05520 4.15996 4.22995 4.31558 4.39123 4.46132 4.53753 4.63415 4.67541 4.68611 4.70189 4.75965 4.78780 4.83289 4.89052 4.95030 4.97211 4.99834 5.01690 5.09483 5.11260 5.14637 5.19602 5.24511 5.29317 5.30653 5.36558 5.40401 5.44201 5.47763 5.48425 5.55987 5.69387 5.76204 6.03038 6.21301 6.37327 6.57955 6.83787 7.25341 7.39619 8.92252 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.034132 B = 0.002229 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.152707 B =12558.070068 C =12964.322558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.099 4.099 3 H 0.077 0.923 4 C -0.105 4.105 5 C 0.058 3.942 6 H 0.043 0.957 7 C -0.096 4.096 8 C -0.110 4.110 9 C -0.089 4.089 10 H 0.120 0.880 11 C 0.513 3.487 12 O -0.591 6.591 13 N -0.707 5.707 14 C 0.138 3.862 15 C -0.057 4.057 16 C -0.124 4.124 17 C -0.124 4.124 18 C -0.004 4.004 19 C -0.501 4.501 20 H 0.054 0.946 21 C 0.005 3.995 22 N -0.949 5.949 23 Si 0.933 3.067 24 H -0.272 1.272 25 H -0.288 1.288 26 H -0.254 1.254 27 C 0.088 3.912 28 N -0.538 5.538 29 C 0.049 3.951 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.088 0.912 39 H 0.413 0.587 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.046 0.954 44 H 0.043 0.957 45 H 0.043 0.957 46 H 0.046 0.954 47 H 0.070 0.930 48 H 0.013 0.987 49 H 0.011 0.989 50 H 0.262 0.738 51 H 0.021 0.979 52 H 0.065 0.935 53 H 0.079 0.921 54 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.090 22.156 -7.188 32.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.118 4.118 3 H 0.096 0.904 4 C -0.143 4.143 5 C -0.050 4.050 6 H 0.061 0.939 7 C -0.134 4.134 8 C -0.148 4.148 9 C -0.111 4.111 10 H 0.137 0.863 11 C 0.300 3.700 12 O -0.471 6.471 13 N -0.360 5.360 14 C 0.014 3.986 15 C -0.058 4.058 16 C -0.182 4.182 17 C -0.181 4.181 18 C -0.042 4.042 19 C -0.539 4.539 20 H 0.072 0.928 21 C -0.191 4.191 22 N -0.591 5.591 23 Si 0.759 3.241 24 H -0.198 1.198 25 H -0.214 1.214 26 H -0.177 1.177 27 C -0.040 4.040 28 N -0.263 5.263 29 C -0.078 4.078 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.251 0.749 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.089 0.911 48 H 0.032 0.968 49 H 0.030 0.970 50 H 0.071 0.929 51 H 0.039 0.961 52 H 0.084 0.916 53 H 0.097 0.903 54 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -22.011 22.021 -6.468 31.800 hybrid contribution 1.681 0.066 1.042 1.979 sum -20.330 22.087 -5.426 30.505 Atomic orbital electron populations 1.21764 0.93401 1.02092 1.02118 1.22272 0.97122 0.98696 0.93689 0.90441 1.22484 0.96370 0.98713 0.96685 1.22734 0.96482 0.96172 0.89616 0.93926 1.21494 0.98255 0.95436 0.98223 1.21596 0.98838 1.02361 0.92047 1.21294 0.95216 0.98609 0.95934 0.86254 1.21153 0.84410 0.80068 0.84355 1.90676 1.66775 1.60675 1.29000 1.45987 1.32718 1.25820 1.31447 1.21267 0.87828 0.94543 0.94989 1.20550 0.95864 0.93083 0.96295 1.21711 0.96687 0.98543 1.01230 1.21705 1.00588 1.00971 0.94823 1.19572 0.94147 0.95087 0.95385 1.21363 1.13491 1.07235 1.11797 0.92803 1.25827 0.98123 0.95080 1.00105 1.70035 1.27915 1.18540 1.42620 0.85911 0.77688 0.80018 0.80531 1.19766 1.21424 1.17741 1.21477 0.91641 0.94546 0.96383 1.62753 1.26642 1.32613 1.04293 1.22675 0.97644 0.90149 0.97373 0.92515 0.91684 0.92542 0.89903 0.89862 0.89392 0.89846 0.92846 0.89300 0.74893 0.92972 0.92883 0.91133 0.93502 0.93773 0.93796 0.93511 0.91072 0.96848 0.97020 0.92867 0.96101 0.91614 0.90272 0.95363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.94 71.98 0.64 -0.61 16 2 C -0.10 -1.12 3.63 -9.32 -0.03 -1.15 16 3 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.10 -1.11 6.15 31.76 0.20 -0.91 16 5 C 0.06 0.82 2.63 44.68 0.12 0.94 16 6 H 0.04 0.71 8.05 -2.38 -0.02 0.69 16 7 C -0.10 -1.15 5.68 30.60 0.17 -0.97 16 8 C -0.11 -1.65 5.05 30.75 0.16 -1.50 16 9 C -0.09 -1.72 2.70 -11.39 -0.03 -1.75 16 10 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 11 C 0.51 13.76 7.15 87.66 0.63 14.39 16 12 O -0.59 -21.22 15.96 -3.04 -0.05 -21.27 16 13 N -0.71 -17.70 4.85 -463.05 -2.24 -19.95 16 14 C 0.14 4.41 4.57 86.38 0.39 4.80 16 15 C -0.06 -2.01 0.54 -52.18 -0.03 -2.04 16 16 C -0.12 -4.08 8.05 71.98 0.58 -3.50 16 17 C -0.12 -4.02 8.05 71.98 0.58 -3.44 16 18 C 0.00 -0.18 3.11 29.85 0.09 -0.09 16 19 C -0.50 -27.12 8.20 25.60 0.21 -26.91 16 20 H 0.05 3.13 5.92 -2.91 -0.02 3.11 16 21 C 0.00 0.28 5.47 84.66 0.46 0.75 16 22 N -0.95 -58.45 13.96 21.45 0.30 -58.15 16 23 Si 0.93 44.65 27.47 68.60 1.88 46.53 16 24 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 26 H -0.25 -11.51 6.54 99.48 0.65 -10.86 16 27 C 0.09 1.92 4.41 86.78 0.38 2.30 16 28 N -0.54 -9.37 4.65 -865.93 -4.03 -13.40 16 29 C 0.05 0.77 6.51 87.03 0.57 1.33 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 0.84 7.85 -2.39 -0.02 0.82 16 35 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.05 0.94 8.13 -2.39 -0.02 0.92 16 38 H 0.09 1.05 7.63 -2.38 -0.02 1.03 16 39 H 0.41 8.04 5.59 -92.71 -0.52 7.52 16 40 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 43 H 0.05 1.79 6.62 -2.39 -0.02 1.77 16 44 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 45 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.05 1.78 6.62 -2.39 -0.02 1.76 16 47 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 48 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 49 H 0.01 0.52 7.57 -2.39 -0.02 0.51 16 50 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 51 H 0.02 0.53 7.94 -2.39 -0.02 0.51 16 52 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 53 H 0.08 1.21 7.71 -2.39 -0.02 1.19 16 54 H 0.03 0.49 8.04 -2.39 -0.02 0.47 16 Total: -1.00 -68.15 401.20 1.23 -66.92 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.27 Total: 17.67 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: 5.09 Total: -18.36 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -5.97 Total: -91.50 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.05 Total: -21.27 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.53 kcal Total: -68.15 1.23 -66.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548705168.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.053 kcal (2) G-P(sol) polarization free energy of solvation -68.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds