Wall clock time and date at job start Tue Mar 31 2020 15:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.30596 * 2 1 4 4 C 1.54988 * 110.43771 * 237.75227 * 2 1 3 5 5 C 1.53266 * 104.18677 * 243.58101 * 4 2 1 6 6 H 1.08999 * 110.29411 * 90.30143 * 5 4 2 7 7 C 1.52246 * 113.89757 * 215.59350 * 5 4 2 8 8 C 1.53655 * 107.54103 * 177.26263 * 7 5 4 9 9 C 1.52819 * 110.61764 * 303.80755 * 8 7 5 10 10 H 1.09002 * 109.23096 * 293.52140 * 9 8 7 11 11 C 1.50696 * 109.23283 * 174.10197 * 9 8 7 12 12 O 1.21284 * 120.00489 * 239.41907 * 11 9 8 13 13 N 1.34777 * 119.99757 * 59.42118 * 11 9 8 14 14 C 1.46506 * 120.00264 * 180.02562 * 13 11 9 15 15 C 1.52999 * 109.47075 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47317 * 59.99940 * 15 14 13 17 17 C 1.52992 * 109.46961 * 299.99478 * 15 14 13 18 18 C 1.53006 * 109.46623 * 179.97438 * 15 14 13 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 15 14 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 15 21 21 C 1.37873 * 119.99861 * 180.02562 * 19 18 15 22 22 N 1.31514 * 120.00522 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99980 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47229 * 89.99965 * 23 21 19 25 25 H 1.48500 * 109.47256 * 209.99879 * 23 21 19 26 26 H 1.48499 * 109.47161 * 329.99530 * 23 21 19 27 27 C 1.53635 * 110.66172 * 53.81151 * 9 8 7 28 28 N 1.45666 * 107.79810 * 302.60131 * 27 9 8 29 29 C 1.47090 * 116.53826 * 182.69435 * 28 27 9 30 30 H 1.09001 * 109.46973 * 299.26866 * 1 2 3 31 31 H 1.08995 * 109.46995 * 59.26361 * 1 2 3 32 32 H 1.08999 * 109.47148 * 179.26946 * 1 2 3 33 33 H 1.09007 * 110.48792 * 2.24998 * 4 2 1 34 34 H 1.08996 * 110.48960 * 124.90038 * 4 2 1 35 35 H 1.08999 * 109.83908 * 296.75277 * 7 5 4 36 36 H 1.08996 * 109.84518 * 57.65399 * 7 5 4 37 37 H 1.09006 * 109.20906 * 183.53882 * 8 7 5 38 38 H 1.08997 * 109.28096 * 64.12455 * 8 7 5 39 39 H 0.96999 * 120.00047 * 359.97438 * 13 11 9 40 40 H 1.09000 * 109.47020 * 59.99522 * 14 13 11 41 41 H 1.09001 * 109.46379 * 299.99687 * 14 13 11 42 42 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 43 43 H 1.09001 * 109.46832 * 179.97438 * 16 15 14 44 44 H 1.09004 * 109.47261 * 59.99813 * 16 15 14 45 45 H 1.09001 * 109.47066 * 180.02562 * 17 15 14 46 46 H 1.08996 * 109.47747 * 300.00196 * 17 15 14 47 47 H 1.09002 * 109.47103 * 60.00608 * 17 15 14 48 48 H 1.08993 * 109.46955 * 300.00075 * 18 15 14 49 49 H 1.09000 * 109.47050 * 59.99904 * 18 15 14 50 50 H 0.96992 * 120.00310 * 180.02562 * 22 21 19 51 51 H 1.08991 * 109.79146 * 62.18283 * 27 9 8 52 52 H 1.09006 * 109.79090 * 183.02920 * 27 9 8 53 53 H 1.08999 * 110.61518 * 316.09015 * 29 28 27 54 54 H 1.09005 * 110.61118 * 79.06900 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0713 -0.7749 -1.2283 5 6 2.8219 -1.9650 -0.6207 6 1 2.1505 -2.8156 -0.5034 7 6 4.0714 -2.3654 -1.3929 8 6 4.7414 -3.5157 -0.6254 9 6 5.0378 -3.1007 0.8152 10 1 5.7943 -2.3159 0.8143 11 6 5.5587 -4.2916 1.5776 12 8 4.9687 -4.6880 2.5603 13 7 6.6804 -4.9161 1.1675 14 6 7.1867 -6.0742 1.9084 15 6 8.4610 -6.5913 1.2379 16 6 9.5193 -5.4864 1.2334 17 6 8.1483 -7.0039 -0.2018 18 6 8.9900 -7.8004 2.0121 19 6 10.2448 -8.3101 1.3513 20 1 10.6266 -7.8208 0.4674 21 6 10.9049 -9.4015 1.8746 22 7 10.4398 -9.9976 2.9507 23 14 12.4608 -10.0329 1.0560 24 1 13.6413 -9.3500 1.6434 25 1 12.5762 -11.4971 1.2751 26 1 12.4016 -9.7537 -0.4013 27 6 3.7665 -2.5774 1.5010 28 7 3.2596 -1.4644 0.7096 29 6 2.0696 -0.7752 1.2315 30 1 -0.3633 0.5024 0.8965 31 1 -0.3633 0.5252 -0.8833 32 1 -0.3633 -1.0276 -0.0131 33 1 1.2484 -1.1219 -1.8534 34 1 2.7519 -0.1486 -1.8049 35 1 3.7968 -2.6991 -2.3936 36 1 4.7526 -1.5172 -1.4601 37 1 5.6746 -3.7824 -1.1217 38 1 4.0776 -4.3802 -0.6210 39 1 7.1521 -4.5993 0.3814 40 1 6.4329 -6.8616 1.9112 41 1 7.4090 -5.7803 2.9342 42 1 9.1427 -4.6247 0.6821 43 1 10.4273 -5.8549 0.7561 44 1 9.7421 -5.1924 2.2591 45 1 9.0561 -7.3727 -0.6794 46 1 7.3944 -7.7911 -0.1986 47 1 7.7717 -6.1423 -0.7531 48 1 9.2127 -7.5060 3.0376 49 1 8.2362 -8.5876 2.0156 50 1 10.9044 -10.7652 3.3190 51 1 3.0189 -3.3691 1.5460 52 1 4.0046 -2.2357 2.5084 53 1 1.3323 -1.4963 1.5843 54 1 2.3448 -0.0849 2.0289 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548705170.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:03 Heat of formation + Delta-G solvation = -85.076484 kcal Electronic energy + Delta-G solvation = -28229.627205 eV Core-core repulsion = 24584.802518 eV Total energy + Delta-G solvation = -3644.824687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.61120 -40.40375 -38.68397 -36.40557 -35.26694 -33.98303 -33.28959 -32.08206 -29.15052 -28.42836 -27.95726 -27.90089 -26.78855 -24.97615 -23.67307 -23.27190 -21.40634 -21.11361 -20.60560 -19.77073 -18.37972 -18.11442 -16.97129 -16.70360 -16.49868 -16.39234 -16.22798 -15.84395 -15.44928 -14.96874 -14.90367 -14.77694 -14.59894 -14.25806 -13.93996 -13.91622 -13.87313 -13.53301 -13.43100 -13.27307 -13.17914 -12.86797 -12.72133 -12.59318 -12.52536 -12.33523 -12.22841 -12.05287 -11.97419 -11.80557 -11.71705 -11.53748 -11.47754 -11.33094 -11.21670 -11.11447 -10.88901 -10.66117 -10.51687 -10.07089 -9.44831 -8.14069 -6.22078 1.42706 1.43156 1.53546 1.62047 2.15011 2.44740 3.02525 3.20256 3.51612 3.52487 3.82315 3.86348 3.95811 4.01195 4.04256 4.08151 4.18922 4.22638 4.31346 4.39362 4.46247 4.54142 4.66136 4.67646 4.69566 4.71292 4.73961 4.77692 4.81308 4.88414 4.92668 4.96713 5.00597 5.05191 5.08404 5.12022 5.13065 5.17976 5.26241 5.32216 5.39943 5.43648 5.45821 5.47221 5.50434 5.53969 5.57413 5.80321 5.89799 5.96215 6.14566 6.29948 6.58095 6.93272 7.25578 7.45735 8.98403 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.037329 B = 0.002134 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.897799 B =13120.225699 C =13504.583332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 H 0.085 0.915 4 C -0.108 4.108 5 C 0.054 3.946 6 H 0.037 0.963 7 C -0.095 4.095 8 C -0.111 4.111 9 C -0.088 4.088 10 H 0.121 0.879 11 C 0.511 3.489 12 O -0.593 6.593 13 N -0.705 5.705 14 C 0.141 3.859 15 C -0.064 4.064 16 C -0.122 4.122 17 C -0.121 4.121 18 C 0.039 3.961 19 C -0.512 4.512 20 H 0.074 0.926 21 C -0.008 4.008 22 N -0.939 5.939 23 Si 0.960 3.040 24 H -0.276 1.276 25 H -0.291 1.291 26 H -0.258 1.258 27 C 0.082 3.918 28 N -0.526 5.526 29 C 0.041 3.959 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.051 0.949 39 H 0.414 0.586 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.035 0.965 45 H 0.056 0.944 46 H 0.035 0.965 47 H 0.072 0.928 48 H -0.016 1.016 49 H -0.016 1.016 50 H 0.259 0.741 51 H 0.021 0.979 52 H 0.066 0.934 53 H 0.033 0.967 54 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.450 22.798 -12.946 30.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 H 0.104 0.896 4 C -0.146 4.146 5 C -0.054 4.054 6 H 0.055 0.945 7 C -0.133 4.133 8 C -0.148 4.148 9 C -0.110 4.110 10 H 0.139 0.861 11 C 0.298 3.702 12 O -0.474 6.474 13 N -0.357 5.357 14 C 0.017 3.983 15 C -0.065 4.065 16 C -0.179 4.179 17 C -0.179 4.179 18 C 0.002 3.998 19 C -0.550 4.550 20 H 0.092 0.908 21 C -0.204 4.204 22 N -0.580 5.580 23 Si 0.785 3.215 24 H -0.202 1.202 25 H -0.217 1.217 26 H -0.182 1.182 27 C -0.047 4.047 28 N -0.250 5.250 29 C -0.087 4.087 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.070 0.930 39 H 0.252 0.748 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.055 0.945 47 H 0.091 0.909 48 H 0.003 0.997 49 H 0.003 0.997 50 H 0.068 0.932 51 H 0.039 0.961 52 H 0.085 0.915 53 H 0.051 0.949 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.390 22.723 -12.142 30.535 hybrid contribution 0.333 -1.743 0.640 1.887 sum -16.057 20.980 -11.502 28.814 Atomic orbital electron populations 1.21839 0.93969 1.01641 1.02529 1.22132 0.95867 0.99698 0.93282 0.89615 1.22263 0.99653 0.95662 0.96995 1.22584 0.96054 0.96594 0.90139 0.94506 1.21477 0.95685 0.97939 0.98197 1.21608 1.02461 0.98803 0.91977 1.21291 0.98992 0.94729 0.95948 0.86072 1.21230 0.79964 0.84694 0.84294 1.90681 1.59433 1.67877 1.29381 1.45974 1.26711 1.31246 1.31812 1.21199 0.95178 0.87138 0.94787 1.20702 0.92985 0.96248 0.96517 1.21704 0.98566 0.96750 1.00923 1.21693 1.01195 1.00480 0.94492 1.18976 0.94929 0.91932 0.93980 1.21595 1.09094 1.12502 1.11852 0.90782 1.25983 1.01237 0.97483 0.95744 1.70125 1.41660 1.22601 1.23641 0.85516 0.79515 0.76987 0.79440 1.20191 1.21667 1.18208 1.21560 0.94911 0.91580 0.96637 1.63901 1.31679 1.25443 1.04003 1.23006 0.90340 0.97065 0.98252 0.92312 0.91237 0.93350 0.90269 0.89865 0.89301 0.89631 0.89086 0.92991 0.74780 0.93870 0.93845 0.90992 0.92445 0.94555 0.92502 0.94538 0.90937 0.99743 0.99725 0.93216 0.96100 0.91545 0.94913 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.95 71.98 0.64 -0.73 16 2 C -0.09 -1.06 3.68 -9.36 -0.03 -1.09 16 3 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.11 -1.19 6.29 31.36 0.20 -0.99 16 5 C 0.05 0.81 2.50 44.40 0.11 0.92 16 6 H 0.04 0.66 7.98 -2.39 -0.02 0.64 16 7 C -0.10 -1.17 5.64 30.57 0.17 -1.00 16 8 C -0.11 -1.74 5.06 30.75 0.16 -1.58 16 9 C -0.09 -1.80 2.69 -11.39 -0.03 -1.84 16 10 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 11 C 0.51 14.77 7.14 87.66 0.63 15.40 16 12 O -0.59 -22.97 15.96 -3.04 -0.05 -23.01 16 13 N -0.71 -19.14 4.85 -463.05 -2.25 -21.39 16 14 C 0.14 5.08 4.56 86.38 0.39 5.47 16 15 C -0.06 -2.40 0.54 -52.18 -0.03 -2.43 16 16 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 17 C -0.12 -3.98 8.05 71.98 0.58 -3.40 16 18 C 0.04 2.01 4.04 29.85 0.12 2.13 16 19 C -0.51 -27.39 7.65 25.60 0.20 -27.19 16 20 H 0.07 3.68 5.68 -2.91 -0.02 3.66 16 21 C -0.01 -0.44 5.46 84.65 0.46 0.03 16 22 N -0.94 -57.36 13.29 21.45 0.28 -57.08 16 23 Si 0.96 43.54 29.54 68.60 2.03 45.56 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 26 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 27 C 0.08 1.88 4.43 86.75 0.38 2.27 16 28 N -0.53 -9.56 4.84 -864.15 -4.18 -13.74 16 29 C 0.04 0.66 6.24 87.02 0.54 1.21 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 0.74 7.74 -2.38 -0.02 0.72 16 34 H 0.08 0.80 8.00 -2.39 -0.02 0.78 16 35 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 1.11 7.66 -2.38 -0.02 1.09 16 38 H 0.05 0.97 8.13 -2.39 -0.02 0.95 16 39 H 0.41 8.50 5.62 -92.71 -0.52 7.98 16 40 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.07 1.76 6.86 -2.39 -0.02 1.74 16 43 H 0.06 2.02 6.62 -2.39 -0.02 2.01 16 44 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 45 H 0.06 2.00 6.62 -2.39 -0.02 1.99 16 46 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 48 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 49 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 50 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 51 H 0.02 0.56 7.89 -2.39 -0.02 0.54 16 52 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 53 H 0.03 0.58 7.88 -2.39 -0.02 0.56 16 54 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -69.52 404.76 1.23 -68.29 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.32 Total: 17.66 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 5.07 Total: -16.28 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -6.14 Total: -92.21 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.05 Total: -23.01 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -69.52 1.23 -68.29 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548705170.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.790 kcal (2) G-P(sol) polarization free energy of solvation -69.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds