Wall clock time and date at job start Tue Mar 31 2020 15:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 110.29889 * 2 1 4 4 C 1.56073 * 109.74135 * 237.70838 * 2 1 3 5 5 C 1.53924 * 101.74685 * 262.58563 * 4 2 1 6 6 H 1.09000 * 110.99705 * 79.79772 * 5 4 2 7 7 C 1.52361 * 113.26993 * 205.35801 * 5 4 2 8 8 C 1.53634 * 107.59654 * 175.66429 * 7 5 4 9 9 C 1.52822 * 110.61021 * 303.59246 * 8 7 5 10 10 H 1.08998 * 109.24533 * 174.13063 * 9 8 7 11 11 C 1.50706 * 109.24149 * 293.56868 * 9 8 7 12 12 O 1.21274 * 120.00042 * 119.72034 * 11 9 8 13 13 N 1.34777 * 119.99766 * 299.99570 * 11 9 8 14 14 C 1.46496 * 120.00266 * 179.97438 * 13 11 9 15 15 C 1.53002 * 109.47425 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.46673 * 299.99796 * 15 14 13 17 17 C 1.52997 * 109.47143 * 60.00244 * 15 14 13 18 18 C 1.52997 * 109.46965 * 180.02562 * 15 14 13 19 19 C 1.50699 * 109.46857 * 179.97438 * 18 15 14 20 20 H 1.07997 * 120.00371 * 0.02562 * 19 18 15 21 21 C 1.37882 * 119.99795 * 179.97438 * 19 18 15 22 22 N 1.31508 * 120.00253 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99916 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47000 * 60.00485 * 23 21 19 25 25 H 1.48496 * 109.47325 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47112 * 300.00833 * 23 21 19 27 27 C 1.53635 * 110.64842 * 53.86452 * 9 8 7 28 28 N 1.45532 * 107.86455 * 302.87165 * 27 9 8 29 29 C 1.46338 * 117.21632 * 185.53568 * 28 27 9 30 30 H 1.08999 * 109.47265 * 299.29603 * 1 2 3 31 31 H 1.09001 * 109.46649 * 59.29502 * 1 2 3 32 32 H 1.08999 * 109.46648 * 179.29182 * 1 2 3 33 33 H 1.09002 * 110.68008 * 144.67058 * 4 2 1 34 34 H 1.09005 * 111.45408 * 20.83761 * 4 2 1 35 35 H 1.09007 * 109.83114 * 56.14800 * 7 5 4 36 36 H 1.08995 * 109.88866 * 295.22253 * 7 5 4 37 37 H 1.09005 * 109.25010 * 183.29922 * 8 7 5 38 38 H 1.09002 * 109.24689 * 63.88227 * 8 7 5 39 39 H 0.96999 * 120.00043 * 0.02562 * 13 11 9 40 40 H 1.09004 * 109.47212 * 300.00463 * 14 13 11 41 41 H 1.09000 * 109.46684 * 60.00307 * 14 13 11 42 42 H 1.09002 * 109.46994 * 60.00420 * 16 15 14 43 43 H 1.08998 * 109.46752 * 179.97438 * 16 15 14 44 44 H 1.08996 * 109.47966 * 299.99941 * 16 15 14 45 45 H 1.08996 * 109.46952 * 60.00137 * 17 15 14 46 46 H 1.09001 * 109.46832 * 180.02562 * 17 15 14 47 47 H 1.09002 * 109.46695 * 299.99691 * 17 15 14 48 48 H 1.09004 * 109.46976 * 299.99579 * 18 15 14 49 49 H 1.09004 * 109.47878 * 59.99710 * 18 15 14 50 50 H 0.97002 * 120.00081 * 179.97438 * 22 21 19 51 51 H 1.08999 * 109.78359 * 62.46216 * 27 9 8 52 52 H 1.08999 * 109.78142 * 183.28051 * 27 9 8 53 53 H 1.09002 * 110.15279 * 327.18813 * 29 28 27 54 54 H 1.08996 * 110.15767 * 88.94726 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0224 0.0000 4 6 2.0572 -0.7848 -1.2418 5 6 2.3461 -2.1705 -0.6373 6 1 1.4295 -2.7518 -0.5372 7 6 3.4056 -2.9526 -1.4036 8 6 3.6691 -4.2554 -0.6332 9 6 4.0820 -3.9546 0.8071 10 1 4.1616 -4.8901 1.3608 11 6 5.4209 -3.2628 0.8057 12 8 5.5290 -2.1502 1.2759 13 7 6.4969 -3.8784 0.2769 14 6 7.7983 -3.2059 0.2750 15 6 8.8412 -4.1147 -0.3788 16 6 8.9440 -5.4221 0.4093 17 6 8.4222 -4.4185 -1.8185 18 6 10.2005 -3.4124 -0.3801 19 6 11.2278 -4.3078 -1.0234 20 1 10.9400 -5.2803 -1.3946 21 6 12.5351 -3.8850 -1.1391 22 7 12.8856 -2.7007 -0.6876 23 14 13.8087 -4.9952 -1.9359 24 1 13.4025 -5.2912 -3.3333 25 1 15.1280 -4.3136 -1.9374 26 1 13.9081 -6.2636 -1.1702 27 6 3.0453 -3.0495 1.4901 28 7 2.9172 -1.8378 0.6943 29 6 2.0680 -0.7726 1.2289 30 1 -0.3634 0.5028 0.8962 31 1 -0.3633 0.5248 -0.8836 32 1 -0.3632 -1.0276 -0.0127 33 1 2.9703 -0.3297 -1.6256 34 1 1.2994 -0.8513 -2.0226 35 1 4.3235 -2.3680 -1.4664 36 1 3.0442 -3.1822 -2.4060 37 1 4.4668 -4.8101 -1.1274 38 1 2.7619 -4.8597 -0.6282 39 1 6.4094 -4.7666 -0.1032 40 1 7.7252 -2.2745 -0.2867 41 1 8.0967 -2.9891 1.3007 42 1 7.9756 -5.9225 0.4106 43 1 9.6866 -6.0697 -0.0567 44 1 9.2425 -5.2057 1.4350 45 1 8.3490 -3.4870 -2.3798 46 1 9.1650 -5.0663 -2.2841 47 1 7.4539 -4.9190 -1.8171 48 1 10.1275 -2.4808 -0.9413 49 1 10.4989 -3.1962 0.6457 50 1 13.8054 -2.4034 -0.7686 51 1 2.0843 -3.5615 1.5397 52 1 3.3817 -2.7967 2.4955 53 1 1.2407 -1.2004 1.7951 54 1 2.6541 -0.1078 1.8633 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548705171.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:07 Heat of formation + Delta-G solvation = -77.416834 kcal Electronic energy + Delta-G solvation = -28959.287473 eV Core-core repulsion = 25314.794934 eV Total energy + Delta-G solvation = -3644.492539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.61327 -40.11919 -38.54540 -36.26529 -35.16635 -33.91794 -33.18125 -31.91812 -29.11245 -28.33410 -27.94202 -27.85107 -26.82001 -25.01641 -23.71463 -23.21040 -21.67064 -20.95223 -20.50791 -19.51703 -18.36226 -17.64393 -17.04085 -16.78706 -16.44706 -16.41057 -15.98715 -15.80339 -15.21241 -14.95389 -14.81245 -14.56759 -14.44963 -14.25412 -13.99562 -13.92303 -13.74871 -13.51833 -13.33361 -13.28639 -12.88883 -12.78267 -12.76179 -12.74229 -12.53804 -12.31689 -12.20976 -12.03043 -11.98564 -11.84281 -11.76856 -11.51107 -11.44408 -11.26102 -11.14995 -11.04429 -10.86743 -10.50368 -10.44669 -9.88251 -9.00871 -8.13157 -6.21417 1.42600 1.45129 1.52301 1.93487 2.36658 2.47357 3.07152 3.20885 3.55637 3.65931 3.80586 3.93937 4.01428 4.03718 4.06975 4.12169 4.20761 4.25482 4.34833 4.41715 4.54214 4.57568 4.64511 4.70504 4.72548 4.74694 4.75572 4.81521 4.86689 4.89186 4.92644 4.98488 5.02345 5.06729 5.09942 5.13907 5.14507 5.19140 5.21398 5.29776 5.43648 5.45641 5.46178 5.50879 5.52442 5.55804 5.66499 5.82043 5.90500 6.19307 6.31050 6.45011 6.80257 6.93994 7.46253 7.54402 8.99299 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.025786 B = 0.002508 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.613745 B =11159.558321 C =11321.747997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 H 0.069 0.931 4 C -0.110 4.110 5 C 0.068 3.932 6 H 0.067 0.933 7 C -0.110 4.110 8 C -0.107 4.107 9 C -0.098 4.098 10 H 0.125 0.875 11 C 0.512 3.488 12 O -0.567 6.567 13 N -0.716 5.716 14 C 0.148 3.852 15 C -0.063 4.063 16 C -0.120 4.120 17 C -0.119 4.119 18 C 0.039 3.961 19 C -0.513 4.513 20 H 0.074 0.926 21 C -0.007 4.007 22 N -0.940 5.940 23 Si 0.960 3.040 24 H -0.266 1.266 25 H -0.292 1.292 26 H -0.266 1.266 27 C 0.084 3.916 28 N -0.547 5.547 29 C 0.059 3.941 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.038 0.962 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.409 0.591 40 H 0.035 0.965 41 H 0.037 0.963 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.034 0.966 45 H 0.033 0.967 46 H 0.055 0.945 47 H 0.071 0.929 48 H -0.018 1.018 49 H -0.017 1.017 50 H 0.259 0.741 51 H 0.061 0.939 52 H 0.059 0.941 53 H 0.047 0.953 54 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.626 -4.944 -0.562 29.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.119 4.119 3 H 0.087 0.913 4 C -0.148 4.148 5 C -0.039 4.039 6 H 0.085 0.915 7 C -0.147 4.147 8 C -0.145 4.145 9 C -0.119 4.119 10 H 0.143 0.857 11 C 0.300 3.700 12 O -0.445 6.445 13 N -0.370 5.370 14 C 0.024 3.976 15 C -0.063 4.063 16 C -0.178 4.178 17 C -0.176 4.176 18 C 0.002 3.998 19 C -0.551 4.551 20 H 0.092 0.908 21 C -0.204 4.204 22 N -0.581 5.581 23 Si 0.785 3.215 24 H -0.190 1.190 25 H -0.218 1.218 26 H -0.191 1.191 27 C -0.045 4.045 28 N -0.272 5.272 29 C -0.068 4.068 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.057 0.943 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.247 0.753 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.001 0.999 49 H 0.001 0.999 50 H 0.068 0.932 51 H 0.078 0.922 52 H 0.078 0.922 53 H 0.065 0.935 54 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -27.908 -3.861 -0.191 28.175 hybrid contribution 0.901 -0.205 0.019 0.924 sum -27.008 -4.067 -0.172 27.313 Atomic orbital electron populations 1.21813 0.93034 1.02090 1.02363 1.22339 0.96732 0.99041 0.93799 0.91270 1.22560 1.00779 0.94546 0.96930 1.22599 0.95796 0.95937 0.89591 0.91513 1.21549 0.98103 0.95970 0.99123 1.21604 1.03507 0.97577 0.91770 1.21557 0.90627 0.99755 0.99999 0.85733 1.21102 0.86316 0.85911 0.76695 1.90688 1.85836 1.21053 1.46895 1.46001 1.07900 1.21105 1.62017 1.21039 0.82866 0.94928 0.98797 1.20679 0.93816 0.95639 0.96179 1.21684 1.01450 0.96010 0.98626 1.21664 1.00671 1.00721 0.94538 1.18974 0.91848 0.94496 0.94490 1.21560 0.93493 1.02654 1.37378 0.90815 1.25990 1.01265 0.96490 0.96652 1.70126 1.18532 1.20852 1.48604 0.85571 0.77649 0.78873 0.79382 1.19044 1.21774 1.19052 1.21666 0.97047 0.89466 0.96312 1.62562 1.50707 1.09653 1.04266 1.22491 0.94253 0.93320 0.96771 0.92304 0.91556 0.92364 0.92908 0.89111 0.94273 0.89501 0.90281 0.88351 0.75331 0.94677 0.94441 0.90984 0.92549 0.94657 0.94797 0.92572 0.91022 0.99941 0.99880 0.93199 0.92153 0.92204 0.93494 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.90 71.98 0.64 -0.99 16 2 C -0.10 -1.73 3.66 -9.11 -0.03 -1.76 16 3 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 4 C -0.11 -1.95 6.20 31.97 0.20 -1.75 16 5 C 0.07 1.22 2.60 44.68 0.12 1.34 16 6 H 0.07 0.97 8.05 -2.39 -0.02 0.95 16 7 C -0.11 -2.00 5.44 30.60 0.17 -1.83 16 8 C -0.11 -1.53 5.34 30.75 0.16 -1.36 16 9 C -0.10 -1.83 2.96 -11.38 -0.03 -1.87 16 10 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 11 C 0.51 14.91 6.17 87.66 0.54 15.45 16 12 O -0.57 -22.32 15.21 -3.01 -0.05 -22.36 16 13 N -0.72 -20.05 4.80 -463.06 -2.22 -22.27 16 14 C 0.15 5.54 4.56 86.38 0.39 5.93 16 15 C -0.06 -2.41 0.54 -52.18 -0.03 -2.44 16 16 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 17 C -0.12 -4.02 8.05 71.98 0.58 -3.44 16 18 C 0.04 2.06 4.04 29.85 0.12 2.18 16 19 C -0.51 -27.80 7.65 25.60 0.20 -27.61 16 20 H 0.07 3.71 5.68 -2.91 -0.02 3.69 16 21 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 22 N -0.94 -58.09 13.29 21.45 0.28 -57.81 16 23 Si 0.96 43.89 29.54 68.60 2.03 45.91 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 27 C 0.08 1.69 4.84 86.77 0.42 2.11 16 28 N -0.55 -12.65 3.54 -865.97 -3.07 -15.72 16 29 C 0.06 1.24 6.51 87.03 0.57 1.81 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 34 H 0.09 1.20 7.88 -2.38 -0.02 1.18 16 35 H 0.04 1.02 7.63 -2.38 -0.02 1.00 16 36 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.02 7.35 -2.38 -0.02 1.00 16 38 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.41 8.77 5.49 -92.71 -0.51 8.26 16 40 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.07 1.81 6.86 -2.39 -0.02 1.79 16 43 H 0.06 2.03 6.62 -2.39 -0.02 2.01 16 44 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.06 2.02 6.62 -2.39 -0.02 2.01 16 47 H 0.07 1.80 6.86 -2.39 -0.02 1.79 16 48 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 49 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 50 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 51 H 0.06 0.90 8.04 -2.39 -0.02 0.88 16 52 H 0.06 1.43 8.03 -2.39 -0.02 1.41 16 53 H 0.05 0.84 7.61 -2.39 -0.02 0.82 16 54 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -72.70 401.78 2.36 -70.34 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.34 Total: 19.58 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 5.05 Total: -17.68 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -5.01 Total: -95.80 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.05 Total: -22.36 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -72.70 2.36 -70.34 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548705171.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.077 kcal (2) G-P(sol) polarization free energy of solvation -72.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds