Wall clock time and date at job start Tue Mar 31 2020 15:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53383 * 1 3 3 H 1.08668 * 108.80542 * 2 1 4 4 C 1.52703 * 109.11543 * 239.39322 * 2 1 3 5 5 C 1.52453 * 110.79912 * 179.46809 * 4 2 1 6 6 C 1.53129 * 110.00676 * 287.61049 * 5 4 2 7 7 C 1.54487 * 107.62472 * 171.00213 * 5 4 2 8 8 C 1.51758 * 112.60849 * 52.14481 * 5 4 2 9 9 C 1.51710 * 115.98598 * 316.66616 * 8 5 4 10 10 C 1.53097 * 111.20268 * 279.16684 * 9 8 5 11 11 N 1.48074 * 107.87710 * 161.87043 * 9 8 5 12 12 C 1.34771 * 119.99809 * 179.97438 * 11 9 8 13 13 O 1.21586 * 120.00194 * 0.02562 * 12 11 9 14 14 N 1.34779 * 119.99619 * 179.72033 * 12 11 9 15 15 C 1.46500 * 119.99952 * 180.27328 * 14 12 11 16 16 C 1.53002 * 109.47326 * 177.27213 * 15 14 12 17 17 C 1.50700 * 115.54525 * 39.70475 * 16 15 14 18 18 H 1.07999 * 119.99894 * 264.47651 * 17 16 15 19 19 C 1.37878 * 120.00277 * 84.47958 * 17 16 15 20 20 N 1.31508 * 119.99820 * 351.86121 * 19 17 16 21 21 Si 1.86800 * 120.00144 * 171.86591 * 19 17 16 22 22 H 1.48500 * 109.46977 * 59.99785 * 21 19 17 23 23 H 1.48497 * 109.47168 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46963 * 299.99960 * 21 19 17 25 25 C 1.52995 * 117.50151 * 253.99689 * 16 15 14 26 26 C 1.52995 * 117.50117 * 185.37101 * 16 15 14 27 27 C 1.52420 * 112.68835 * 43.31961 * 9 8 5 28 28 H 1.09001 * 109.46990 * 180.61338 * 1 2 3 29 29 H 1.09006 * 109.46704 * 300.60552 * 1 2 3 30 30 H 1.08996 * 109.47306 * 60.60997 * 1 2 3 31 31 H 1.09309 * 109.25814 * 58.82892 * 4 2 1 32 32 H 1.09302 * 109.28313 * 300.14968 * 4 2 1 33 33 H 1.09003 * 109.47533 * 180.34095 * 6 5 4 34 34 H 1.08995 * 109.47374 * 300.34470 * 6 5 4 35 35 H 1.09003 * 109.47079 * 60.34488 * 6 5 4 36 36 H 1.09008 * 109.46746 * 298.19942 * 7 5 4 37 37 H 1.08992 * 109.47198 * 58.19833 * 7 5 4 38 38 H 1.09004 * 109.47035 * 178.20449 * 7 5 4 39 39 H 1.10227 * 108.61661 * 194.01886 * 8 5 4 40 40 H 1.10271 * 108.56199 * 79.19294 * 8 5 4 41 41 H 1.09000 * 109.47448 * 308.69544 * 10 9 8 42 42 H 1.09003 * 109.46993 * 68.69911 * 10 9 8 43 43 H 1.09005 * 109.46790 * 188.69477 * 10 9 8 44 44 H 0.96998 * 119.99267 * 0.02562 * 11 9 8 45 45 H 0.97000 * 120.00217 * 0.28282 * 14 12 11 46 46 H 1.09000 * 109.47219 * 297.27644 * 15 14 12 47 47 H 1.09001 * 109.46738 * 57.27794 * 15 14 12 48 48 H 0.97002 * 119.99981 * 185.02728 * 20 19 17 49 49 H 1.09000 * 117.49540 * 359.97438 * 25 16 15 50 50 H 1.09004 * 117.49668 * 145.01850 * 25 16 15 51 51 H 1.09005 * 117.50009 * 214.98156 * 26 16 15 52 52 H 1.09001 * 117.49646 * 359.97438 * 26 16 15 53 53 H 1.09294 * 109.46865 * 68.49673 * 27 9 8 54 54 H 1.09316 * 109.45208 * 187.40166 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5338 0.0000 0.0000 3 1 1.8841 1.0287 0.0000 4 6 2.0339 -0.7346 -1.2418 5 6 3.5577 -0.7460 -1.2871 6 6 4.0821 0.6510 -1.6307 7 6 3.9845 -1.6916 -2.4318 8 6 4.1758 -1.2607 -0.0002 9 6 3.5574 -0.7467 1.2862 10 6 4.0848 0.6475 1.6356 11 7 3.9646 -1.6563 2.3814 12 6 3.5469 -1.4231 3.6414 13 8 2.8354 -0.4661 3.8787 14 7 3.9129 -2.2542 4.6373 15 6 3.4540 -2.0042 6.0059 16 6 3.9509 -3.1235 6.9230 17 6 5.3536 -3.6064 6.6578 18 1 5.5175 -4.4732 6.0349 19 6 6.4277 -2.9415 7.2104 20 7 6.2433 -1.7984 7.8339 21 14 8.1447 -3.6643 7.0732 22 1 8.5090 -3.8063 5.6406 23 1 9.1161 -2.7632 7.7436 24 1 8.1739 -4.9979 7.7259 25 6 2.9259 -4.1555 7.3975 26 6 3.4704 -3.1124 8.3755 27 6 2.0339 -0.7341 1.2422 28 1 -0.3633 -1.0276 0.0110 29 1 -0.3633 0.5233 0.8846 30 1 -0.3634 0.5043 -0.8954 31 1 1.6473 -0.2372 -2.1351 32 1 1.6625 -1.7625 -1.2272 33 1 5.1714 0.6316 -1.6668 34 1 3.6919 0.9571 -2.6013 35 1 3.7564 1.3590 -0.8686 36 1 3.6302 -2.7006 -2.2208 37 1 3.5530 -1.3439 -3.3703 38 1 5.0716 -1.6976 -2.5119 39 1 5.2490 -1.0095 -0.0003 40 1 4.1215 -2.3621 -0.0007 41 1 5.1744 0.6406 1.6108 42 1 3.7094 1.3701 0.9109 43 1 3.7458 0.9245 2.6339 44 1 4.5325 -2.4194 2.1921 45 1 4.4802 -3.0178 4.4479 46 1 3.8479 -1.0487 6.3524 47 1 2.3645 -1.9762 6.0243 48 1 7.0060 -1.2946 8.1588 49 1 1.8974 -4.0367 7.0567 50 1 3.2660 -5.1841 7.5178 51 1 4.1687 -3.4548 9.1393 52 1 2.8006 -2.3075 8.6779 53 1 1.6614 -1.7616 1.2284 54 1 1.6480 -0.2356 2.1353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680715313.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:49 Heat of formation + Delta-G solvation = -51.411360 kcal Electronic energy + Delta-G solvation = -29247.930901 eV Core-core repulsion = 25604.566043 eV Total energy + Delta-G solvation = -3643.364857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.64627 -40.02012 -38.48320 -35.99680 -35.07202 -34.74539 -33.99674 -31.73147 -28.56155 -27.84601 -27.61003 -27.46368 -27.10690 -26.90587 -22.96075 -22.50277 -21.71832 -21.31532 -20.57393 -19.20140 -18.70939 -18.06733 -17.08393 -16.60605 -16.32202 -16.04469 -15.86844 -15.67654 -15.48252 -15.00683 -14.94203 -14.67394 -14.40071 -14.30775 -13.86879 -13.61360 -13.46047 -13.41625 -13.27753 -13.00385 -12.92405 -12.87353 -12.77793 -12.53086 -12.41275 -12.37341 -12.02648 -12.01687 -11.90692 -11.82869 -11.63763 -11.47438 -11.41611 -11.11073 -11.02026 -10.82948 -10.51436 -10.43920 -10.12953 -9.95468 -9.43406 -8.08529 -6.22198 1.43616 1.46621 1.52378 1.94318 2.40548 2.43052 3.18522 3.38636 3.58884 3.67231 3.69053 3.99051 4.10582 4.13012 4.18606 4.28602 4.29013 4.41584 4.52112 4.55382 4.67191 4.69693 4.71967 4.77029 4.79923 4.86666 4.87755 4.92305 4.95704 5.00329 5.01177 5.04735 5.10161 5.12431 5.16595 5.18931 5.24590 5.27430 5.29460 5.39410 5.47365 5.49820 5.51451 5.53993 5.58699 5.62452 5.67617 5.76849 5.81222 5.90531 6.30126 6.39898 6.85133 7.39221 7.47642 7.85638 8.98609 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.003278 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.619693 B = 8540.856086 C = 9469.151081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 H 0.071 0.929 4 C -0.097 4.097 5 C -0.049 4.049 6 C -0.145 4.145 7 C -0.141 4.141 8 C -0.103 4.103 9 C 0.209 3.791 10 C -0.160 4.160 11 N -0.743 5.743 12 C 0.696 3.304 13 O -0.634 6.634 14 N -0.716 5.716 15 C 0.202 3.798 16 C 0.008 3.992 17 C -0.506 4.506 18 H 0.065 0.935 19 C 0.032 3.968 20 N -0.903 5.903 21 Si 0.948 3.052 22 H -0.266 1.266 23 H -0.294 1.294 24 H -0.272 1.272 25 C -0.182 4.182 26 C -0.163 4.163 27 C -0.113 4.113 28 H 0.052 0.948 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.078 0.922 43 H 0.044 0.956 44 H 0.401 0.599 45 H 0.404 0.596 46 H 0.021 0.979 47 H 0.034 0.966 48 H 0.258 0.742 49 H 0.086 0.914 50 H 0.085 0.915 51 H 0.064 0.936 52 H 0.069 0.931 53 H 0.050 0.950 54 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.406 0.733 -21.950 22.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 H 0.089 0.911 4 C -0.135 4.135 5 C -0.050 4.050 6 C -0.202 4.202 7 C -0.199 4.199 8 C -0.141 4.141 9 C 0.124 3.876 10 C -0.218 4.218 11 N -0.399 5.399 12 C 0.396 3.604 13 O -0.517 6.517 14 N -0.370 5.370 15 C 0.077 3.923 16 C 0.007 3.993 17 C -0.544 4.544 18 H 0.083 0.917 19 C -0.170 4.170 20 N -0.540 5.540 21 Si 0.774 3.226 22 H -0.191 1.191 23 H -0.221 1.221 24 H -0.198 1.198 25 C -0.219 4.219 26 C -0.201 4.201 27 C -0.152 4.152 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.236 0.764 45 H 0.240 0.760 46 H 0.039 0.961 47 H 0.052 0.948 48 H 0.067 0.933 49 H 0.104 0.896 50 H 0.103 0.897 51 H 0.082 0.918 52 H 0.088 0.912 53 H 0.069 0.931 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.939 1.680 -21.564 22.430 hybrid contribution 1.546 -0.699 0.824 1.886 sum -4.393 0.980 -20.741 21.223 Atomic orbital electron populations 1.21892 0.94908 1.01731 1.01702 1.20983 0.95776 0.99380 0.94112 0.91065 1.21544 0.94064 1.00631 0.97237 1.20252 0.94987 0.96313 0.93414 1.22060 1.00962 0.95573 1.01651 1.22261 1.01443 0.98638 0.97519 1.21493 1.00007 1.01181 0.91450 1.20114 0.93996 0.88383 0.85096 1.22343 1.00290 0.96932 1.02227 1.45930 1.56030 1.32489 1.05491 1.16194 0.80379 0.82444 0.81342 1.90756 1.44489 1.32640 1.83780 1.45048 1.54677 1.30438 1.06874 1.20274 0.94428 0.97245 0.80394 1.19103 0.93384 0.94312 0.92463 1.20521 0.89312 1.13216 1.31354 0.91685 1.25665 1.02238 0.94888 0.94166 1.70112 1.31393 1.13984 1.38521 0.85772 0.79974 0.78209 0.78596 1.19117 1.22055 1.19768 1.23069 0.97869 0.95451 1.05477 1.22435 1.02391 1.00718 0.94551 1.21788 0.94262 1.00312 0.98791 0.92900 0.93970 0.91089 0.90440 0.92005 0.92500 0.91480 0.92949 0.92689 0.91599 0.92425 0.91170 0.90983 0.93088 0.90316 0.93651 0.76353 0.75955 0.96077 0.94807 0.93303 0.89572 0.89662 0.91780 0.91237 0.93144 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.17 72.11 0.66 -2.04 16 2 C -0.08 -1.66 2.51 -10.86 -0.03 -1.69 16 3 H 0.07 1.45 6.04 -2.56 -0.02 1.43 16 4 C -0.10 -1.49 3.78 30.31 0.11 -1.38 16 5 C -0.05 -0.72 0.71 -52.22 -0.04 -0.76 16 6 C -0.15 -2.03 8.00 72.03 0.58 -1.46 16 7 C -0.14 -1.68 8.08 72.49 0.59 -1.10 16 8 C -0.10 -1.92 3.52 29.76 0.10 -1.82 16 9 C 0.21 5.37 0.79 2.72 0.00 5.37 16 10 C -0.16 -4.59 8.05 72.01 0.58 -4.01 16 11 N -0.74 -22.45 5.03 -437.66 -2.20 -24.65 16 12 C 0.70 27.87 7.87 179.06 1.41 29.28 16 13 O -0.63 -29.48 12.31 -3.99 -0.05 -29.53 16 14 N -0.72 -29.97 5.37 -478.53 -2.57 -32.54 16 15 C 0.20 9.57 5.75 86.38 0.50 10.06 16 16 C 0.01 0.38 1.71 -52.93 -0.09 0.29 16 17 C -0.51 -25.39 7.39 25.60 0.19 -25.20 16 18 H 0.07 3.12 7.83 -2.91 -0.02 3.10 16 19 C 0.03 1.67 5.38 84.66 0.46 2.12 16 20 N -0.90 -50.81 13.01 21.45 0.28 -50.53 16 21 Si 0.95 41.32 29.55 68.60 2.03 43.35 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 23 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 C -0.18 -7.46 9.88 30.59 0.30 -7.16 16 26 C -0.16 -7.54 9.55 30.59 0.29 -7.24 16 27 C -0.11 -3.04 3.49 30.31 0.11 -2.93 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 0.96 8.12 -2.22 -0.02 0.95 16 32 H 0.06 0.96 8.11 -2.23 -0.02 0.95 16 33 H 0.06 0.77 8.08 -2.39 -0.02 0.75 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.05 0.83 4.80 -2.39 -0.01 0.82 16 36 H 0.05 0.66 8.05 -2.38 -0.02 0.64 16 37 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.07 1.27 7.84 -1.73 -0.01 1.26 16 40 H 0.07 1.25 7.64 -1.71 -0.01 1.24 16 41 H 0.05 1.41 8.01 -2.39 -0.02 1.39 16 42 H 0.08 1.89 4.80 -2.39 -0.01 1.88 16 43 H 0.04 1.69 5.84 -2.38 -0.01 1.68 16 44 H 0.40 10.15 8.29 -92.71 -0.77 9.38 16 45 H 0.40 15.88 7.39 -92.71 -0.69 15.20 16 46 H 0.02 1.15 8.14 -2.39 -0.02 1.14 16 47 H 0.03 1.57 7.95 -2.39 -0.02 1.55 16 48 H 0.26 14.12 8.32 -92.71 -0.77 13.35 16 49 H 0.09 3.19 8.08 -2.39 -0.02 3.17 16 50 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 51 H 0.06 3.16 8.14 -2.38 -0.02 3.14 16 52 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 53 H 0.05 1.39 8.17 -2.23 -0.02 1.38 16 54 H 0.05 1.83 6.17 -2.22 -0.01 1.81 16 Total: -1.00 -62.32 403.15 2.64 -59.67 By element: Atomic # 1 Polarization: 44.43 SS G_CDS: -0.56 Total: 43.86 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: 5.72 Total: -9.63 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -4.49 Total: -107.73 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.05 Total: -29.53 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -62.32 2.64 -59.67 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680715313.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.262 kcal (2) G-P(sol) polarization free energy of solvation -62.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds