Wall clock time and date at job start Tue Mar 31 2020 15:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.49820 * 2 1 4 4 C 1.53040 * 109.49727 * 239.93328 * 2 1 3 5 5 C 1.53045 * 109.53364 * 178.64874 * 4 2 1 6 6 C 1.53186 * 109.31179 * 61.36967 * 5 4 2 7 7 N 1.46923 * 108.77584 * 305.36095 * 6 5 4 8 8 C 1.34777 * 120.63003 * 233.63417 * 7 6 5 9 9 O 1.21612 * 120.00290 * 175.69034 * 8 7 6 10 10 C 1.47106 * 120.00033 * 355.68578 * 8 7 6 11 11 C 1.32997 * 120.00193 * 185.32842 * 10 8 7 12 12 C 1.50700 * 119.99836 * 9.88221 * 11 10 8 13 13 C 1.53003 * 109.47080 * 48.26815 * 12 11 10 14 14 C 1.52997 * 109.47313 * 168.27279 * 12 11 10 15 15 C 1.53002 * 109.47104 * 288.27309 * 12 11 10 16 16 C 1.46988 * 118.75580 * 53.60945 * 7 6 5 17 17 H 1.09004 * 109.57992 * 66.17152 * 16 7 6 18 18 C 1.53007 * 109.62981 * 186.61985 * 16 7 6 19 19 C 1.52997 * 109.46886 * 67.58219 * 18 16 7 20 20 N 1.46503 * 109.47022 * 187.12124 * 19 18 16 21 21 C 1.36938 * 120.00073 * 180.02562 * 20 19 18 22 22 H 1.08002 * 119.99744 * 359.97438 * 21 20 19 23 23 C 1.38804 * 119.99879 * 180.02562 * 21 20 19 24 24 N 1.31624 * 120.00089 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00056 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46752 * 89.99733 * 25 23 21 27 27 H 1.48501 * 109.47437 * 209.99874 * 25 23 21 28 28 H 1.48501 * 109.47048 * 330.00381 * 25 23 21 29 29 H 1.08997 * 109.46850 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46998 * 299.99709 * 1 2 3 31 31 H 1.08992 * 109.47113 * 60.00434 * 1 2 3 32 32 H 1.08990 * 109.46256 * 298.66876 * 4 2 1 33 33 H 1.09000 * 109.46031 * 58.64541 * 4 2 1 34 34 H 1.09007 * 109.49314 * 181.32064 * 5 4 2 35 35 H 1.08996 * 109.50021 * 301.40926 * 5 4 2 36 36 H 1.08999 * 109.59093 * 65.15179 * 6 5 4 37 37 H 1.09003 * 109.58561 * 185.57268 * 6 5 4 38 38 H 1.07998 * 119.99820 * 5.32757 * 10 8 7 39 39 H 1.07990 * 120.00125 * 189.88724 * 11 10 8 40 40 H 1.09000 * 109.46372 * 93.82494 * 13 12 11 41 41 H 1.09002 * 109.47194 * 213.82003 * 13 12 11 42 42 H 1.08992 * 109.47328 * 333.82545 * 13 12 11 43 43 H 1.08997 * 109.46964 * 59.99742 * 14 12 11 44 44 H 1.08997 * 109.47124 * 180.02562 * 14 12 11 45 45 H 1.09004 * 109.46567 * 300.00101 * 14 12 11 46 46 H 1.09003 * 109.47538 * 31.22471 * 15 12 11 47 47 H 1.08996 * 109.47094 * 151.22851 * 15 12 11 48 48 H 1.08999 * 109.46958 * 271.22184 * 15 12 11 49 49 H 1.09007 * 109.46795 * 187.58189 * 18 16 7 50 50 H 1.08998 * 109.47085 * 307.58193 * 18 16 7 51 51 H 1.08994 * 109.47344 * 307.12233 * 19 18 16 52 52 H 1.09002 * 109.47155 * 67.12417 * 19 18 16 53 53 H 0.96997 * 119.99826 * 359.97438 * 20 19 18 54 54 H 0.96999 * 119.99485 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 -1.2485 5 6 3.5709 -0.6939 -1.2665 6 6 4.1059 -1.4254 -0.0315 7 7 3.5053 -0.8283 1.1690 8 6 4.2819 -0.3844 2.1771 9 8 3.7783 0.1785 3.1302 10 6 5.7388 -0.5810 2.1247 11 6 6.4938 -0.2394 3.1649 12 6 5.8479 0.1377 4.4732 13 6 4.7963 -0.9100 4.8435 14 6 6.9138 0.2000 5.5690 15 6 5.1778 1.5063 4.3353 16 6 2.0414 -0.7234 1.2498 17 1 1.6058 -1.7215 1.2982 18 6 1.6511 0.0708 2.4980 19 6 2.0946 1.5261 2.3357 20 7 1.8758 2.2463 3.5926 21 6 2.2003 3.5734 3.6867 22 1 2.6179 4.0889 2.8345 23 6 1.9934 4.2556 4.8777 24 7 1.4849 3.6271 5.9165 25 14 2.4367 6.0657 5.0065 26 1 1.2647 6.8910 4.6185 27 1 2.8241 6.3823 6.4047 28 1 3.5736 6.3626 4.0984 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.6973 -1.7570 -1.2355 33 1 1.6579 -0.2242 -2.1390 34 1 3.9335 -1.1883 -2.1678 35 1 3.9154 0.3401 -1.2547 36 1 3.8388 -2.4807 -0.0875 37 1 5.1902 -1.3228 0.0127 38 1 6.1953 -1.0028 1.2415 39 1 7.5697 -0.2321 3.0720 40 1 5.2446 -1.6602 5.4950 41 1 3.9684 -0.4264 5.3621 42 1 4.4267 -1.3899 3.9374 43 1 7.6630 0.9464 5.3052 44 1 6.4466 0.4723 6.5153 45 1 7.3912 -0.7750 5.6672 46 1 4.8305 1.6393 3.3107 47 1 4.3295 1.5657 5.0171 48 1 5.8960 2.2888 4.5800 49 1 0.5696 0.0330 2.6292 50 1 2.1385 -0.3623 3.3714 51 1 3.1534 1.5568 2.0790 52 1 1.5144 1.9964 1.5417 53 1 1.5004 1.7833 4.3578 54 1 1.3408 4.1038 6.7488 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689042425.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:35 Heat of formation + Delta-G solvation = 30.798142 kcal Electronic energy + Delta-G solvation = -31066.469489 eV Core-core repulsion = 27426.669503 eV Total energy + Delta-G solvation = -3639.799986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -42.15682 -39.60299 -37.25008 -36.71301 -35.04482 -33.85248 -32.50333 -32.31530 -29.78239 -28.06070 -27.94282 -27.52250 -26.53640 -25.13111 -23.66730 -23.55258 -22.16681 -21.17090 -20.10925 -19.05891 -18.36472 -17.85842 -16.91941 -16.78101 -16.42150 -16.01999 -15.78698 -15.46685 -15.17172 -15.02979 -14.83620 -14.57400 -14.52972 -14.25011 -14.15412 -13.72743 -13.54049 -13.29226 -13.10177 -13.00022 -12.87344 -12.81412 -12.63061 -12.49983 -12.34371 -12.18915 -12.04320 -11.95703 -11.75095 -11.66500 -11.58605 -11.51689 -11.40931 -11.35462 -11.19945 -11.08172 -10.78111 -10.01020 -9.41871 -9.05503 -8.68577 -7.84599 -5.06924 0.65268 1.41738 1.43711 1.51502 2.26903 2.58965 2.60622 3.48117 3.69702 3.81386 3.87652 3.97290 3.98433 4.15011 4.19272 4.24467 4.30728 4.36947 4.46355 4.52457 4.63098 4.65499 4.70331 4.74544 4.77217 4.83150 4.90582 4.93294 4.96526 4.98444 5.02394 5.04440 5.10396 5.12760 5.17822 5.26506 5.29781 5.31831 5.35155 5.37869 5.42657 5.49178 5.50845 5.58274 5.60450 5.64958 5.68138 5.79882 5.95970 6.02506 6.37500 6.79108 7.43252 7.64305 8.28489 8.51218 9.39770 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.009983 B = 0.005989 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.133514 B = 4673.804282 C = 6634.807670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 H 0.050 0.950 4 C -0.107 4.107 5 C -0.132 4.132 6 C 0.105 3.895 7 N -0.609 5.609 8 C 0.495 3.505 9 O -0.491 6.491 10 C -0.225 4.225 11 C -0.051 4.051 12 C -0.040 4.040 13 C -0.104 4.104 14 C -0.135 4.135 15 C -0.087 4.087 16 C 0.169 3.831 17 H 0.080 0.920 18 C -0.114 4.114 19 C 0.189 3.811 20 N -0.724 5.724 21 C -0.213 4.213 22 H 0.058 0.942 23 C -0.076 4.076 24 N -0.969 5.969 25 Si 0.958 3.042 26 H -0.289 1.289 27 H -0.297 1.297 28 H -0.275 1.275 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.048 0.952 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.159 0.841 39 H 0.152 0.848 40 H 0.039 0.961 41 H 0.023 0.977 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.038 0.962 45 H 0.073 0.927 46 H 0.060 0.940 47 H 0.023 0.977 48 H 0.009 0.991 49 H 0.037 0.963 50 H 0.084 0.916 51 H 0.027 0.973 52 H -0.020 1.020 53 H 0.367 0.633 54 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.790 -17.010 -15.889 25.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.069 0.931 4 C -0.145 4.145 5 C -0.170 4.170 6 C -0.017 4.017 7 N -0.344 5.344 8 C 0.288 3.712 9 O -0.369 6.369 10 C -0.245 4.245 11 C -0.071 4.071 12 C -0.040 4.040 13 C -0.161 4.161 14 C -0.193 4.193 15 C -0.144 4.144 16 C 0.065 3.935 17 H 0.098 0.902 18 C -0.151 4.151 19 C 0.064 3.936 20 N -0.364 5.364 21 C -0.346 4.346 22 H 0.076 0.924 23 C -0.268 4.268 24 N -0.622 5.622 25 Si 0.789 3.211 26 H -0.217 1.217 27 H -0.223 1.223 28 H -0.201 1.201 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.120 0.880 38 H 0.176 0.824 39 H 0.170 0.830 40 H 0.058 0.942 41 H 0.042 0.958 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.092 0.908 46 H 0.079 0.921 47 H 0.042 0.958 48 H 0.028 0.972 49 H 0.055 0.945 50 H 0.102 0.898 51 H 0.044 0.956 52 H -0.002 1.002 53 H 0.198 0.802 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 9.597 -16.560 -15.473 24.612 hybrid contribution -0.456 1.513 0.875 1.806 sum 9.141 -15.047 -14.599 22.871 Atomic orbital electron populations 1.21752 0.94447 1.02328 1.01365 1.21577 0.96190 0.99359 0.95306 0.93130 1.21549 0.95662 1.01002 0.96270 1.21922 0.95732 1.00776 0.98599 1.21995 0.99284 0.97455 0.82963 1.48065 1.05684 1.61556 1.19080 1.19037 0.88822 0.80164 0.83225 1.91222 1.74085 1.38098 1.33526 1.22899 0.92376 1.07391 1.01853 1.23974 1.00479 0.89911 0.92705 1.19649 0.94961 0.95642 0.93729 1.22014 0.96867 0.96697 1.00567 1.21945 0.97615 1.02296 0.97416 1.21699 0.96851 0.93401 1.02441 1.21115 0.79971 0.98220 0.94198 0.90180 1.22131 0.98229 0.95733 0.99024 1.20814 0.96214 0.90273 0.86337 1.42325 1.75608 1.07343 1.11110 1.19382 1.31609 0.87710 0.95905 0.92399 1.25306 1.03925 1.01422 0.96128 1.69827 1.53330 1.36448 1.02565 0.85346 0.77770 0.81716 0.76306 1.21666 1.22338 1.20082 0.91109 0.94565 0.91923 0.90404 0.91307 0.88188 0.93307 0.89853 0.88046 0.82400 0.83022 0.94238 0.95764 0.91993 0.92107 0.94316 0.90784 0.92088 0.95816 0.97228 0.94482 0.89814 0.95565 1.00242 0.80246 0.94589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.97 71.98 0.65 -2.66 16 2 C -0.10 -2.54 1.94 -10.71 -0.02 -2.56 16 3 H 0.05 1.57 6.16 -2.39 -0.01 1.55 16 4 C -0.11 -1.76 5.17 30.62 0.16 -1.60 16 5 C -0.13 -1.89 6.08 30.67 0.19 -1.70 16 6 C 0.10 1.54 6.32 86.36 0.55 2.09 16 7 N -0.61 -14.59 2.93 -799.11 -2.34 -16.92 16 8 C 0.50 14.35 4.58 86.57 0.40 14.74 16 9 O -0.49 -18.23 2.22 -4.07 -0.01 -18.24 16 10 C -0.22 -4.99 8.81 23.43 0.21 -4.78 16 11 C -0.05 -1.19 8.54 24.52 0.21 -0.98 16 12 C -0.04 -1.23 0.75 -52.93 -0.04 -1.27 16 13 C -0.10 -3.45 7.57 71.98 0.54 -2.90 16 14 C -0.14 -3.57 8.06 71.98 0.58 -2.99 16 15 C -0.09 -3.64 7.52 71.98 0.54 -3.10 16 16 C 0.17 4.49 2.67 44.97 0.12 4.61 16 17 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 18 C -0.11 -4.20 4.17 30.60 0.13 -4.07 16 19 C 0.19 8.52 4.20 86.38 0.36 8.89 16 20 N -0.72 -40.17 5.49 -343.46 -1.89 -42.05 16 21 C -0.21 -12.87 9.99 84.03 0.84 -12.03 16 22 H 0.06 3.46 7.83 -2.91 -0.02 3.44 16 23 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 24 N -0.97 -63.30 13.06 21.65 0.28 -63.02 16 25 Si 0.96 49.75 29.55 68.60 2.03 51.78 16 26 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 27 H -0.30 -15.43 7.11 99.48 0.71 -14.73 16 28 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.04 1.05 6.80 -2.39 -0.02 1.03 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.10 1.14 5.36 -2.39 -0.01 1.13 16 38 H 0.16 2.23 5.90 -2.91 -0.02 2.21 16 39 H 0.15 2.46 8.01 -2.92 -0.02 2.44 16 40 H 0.04 1.13 7.77 -2.39 -0.02 1.11 16 41 H 0.02 0.98 7.08 -2.39 -0.02 0.96 16 42 H 0.06 1.99 4.56 -2.39 -0.01 1.97 16 43 H 0.06 1.46 8.11 -2.39 -0.02 1.44 16 44 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.07 1.55 8.12 -2.39 -0.02 1.53 16 46 H 0.06 2.73 4.75 -2.52 -0.01 2.72 16 47 H 0.02 1.20 7.30 -2.39 -0.02 1.18 16 48 H 0.01 0.37 7.83 -2.39 -0.02 0.35 16 49 H 0.04 1.40 7.02 -2.38 -0.02 1.39 16 50 H 0.08 3.47 5.78 -16.96 -0.10 3.37 16 51 H 0.03 1.24 4.67 -2.39 -0.01 1.23 16 52 H -0.02 -0.94 6.66 -2.39 -0.02 -0.95 16 53 H 0.37 22.17 7.67 -92.71 -0.71 21.46 16 54 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -73.96 384.36 4.03 -69.93 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: 0.08 Total: 33.06 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 5.87 Total: -14.54 kcal Atomic # 7 Polarization: -118.05 SS G_CDS: -3.94 Total: -122.00 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.01 Total: -18.24 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 2.03 Total: 51.78 kcal Total: -73.96 4.03 -69.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689042425.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.728 kcal (2) G-P(sol) polarization free energy of solvation -73.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds