Wall clock time and date at job start Tue Mar 31 2020 15:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.52392 * 2 1 4 4 C 1.53035 * 109.50101 * 239.91477 * 2 1 3 5 5 C 1.53045 * 109.53517 * 301.41510 * 4 2 1 6 6 C 1.53188 * 109.31135 * 298.63037 * 5 4 2 7 7 N 1.46966 * 108.88658 * 54.56142 * 6 5 4 8 8 C 1.34781 * 120.65134 * 126.46378 * 7 6 5 9 9 O 1.21615 * 119.99653 * 185.32246 * 8 7 6 10 10 C 1.47097 * 120.00235 * 5.32146 * 8 7 6 11 11 C 1.32990 * 120.00072 * 173.45876 * 10 8 7 12 12 C 1.50704 * 120.00090 * 354.19417 * 11 10 8 13 13 C 1.52999 * 109.47116 * 69.53957 * 12 11 10 14 14 C 1.52998 * 109.47404 * 189.54169 * 12 11 10 15 15 C 1.53001 * 109.47053 * 309.54435 * 12 11 10 16 16 C 1.46927 * 118.71248 * 306.63886 * 7 6 5 17 17 H 1.08997 * 109.58703 * 293.50028 * 16 7 6 18 18 C 1.53009 * 109.58271 * 173.21899 * 16 7 6 19 19 C 1.52997 * 109.46937 * 180.12441 * 18 16 7 20 20 N 1.46495 * 109.47049 * 175.99726 * 19 18 16 21 21 C 1.36943 * 119.99966 * 180.02562 * 20 19 18 22 22 H 1.07999 * 119.99920 * 0.02562 * 21 20 19 23 23 C 1.38812 * 120.00009 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99576 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00081 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47090 * 89.99930 * 25 23 21 27 27 H 1.48497 * 109.46900 * 210.00362 * 25 23 21 28 28 H 1.48502 * 109.46884 * 330.00276 * 25 23 21 29 29 H 1.09004 * 109.47178 * 299.92266 * 1 2 3 30 30 H 1.09001 * 109.46812 * 59.92214 * 1 2 3 31 31 H 1.08997 * 109.46770 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46126 * 61.43138 * 4 2 1 33 33 H 1.08997 * 109.46363 * 181.40583 * 4 2 1 34 34 H 1.08999 * 109.49616 * 58.58477 * 5 4 2 35 35 H 1.09002 * 109.49449 * 178.68327 * 5 4 2 36 36 H 1.09006 * 109.58577 * 174.42262 * 6 5 4 37 37 H 1.08992 * 109.58965 * 294.70375 * 6 5 4 38 38 H 1.08001 * 120.00154 * 353.45595 * 10 8 7 39 39 H 1.08002 * 120.00290 * 174.19656 * 11 10 8 40 40 H 1.09001 * 109.47126 * 96.18313 * 13 12 11 41 41 H 1.09001 * 109.47388 * 216.18604 * 13 12 11 42 42 H 1.09005 * 109.47379 * 336.18667 * 13 12 11 43 43 H 1.09000 * 109.46983 * 60.00256 * 14 12 11 44 44 H 1.08997 * 109.46999 * 180.02562 * 14 12 11 45 45 H 1.09000 * 109.47126 * 300.00074 * 14 12 11 46 46 H 1.09002 * 109.47026 * 27.11159 * 15 12 11 47 47 H 1.09003 * 109.47405 * 147.11393 * 15 12 11 48 48 H 1.09000 * 109.47210 * 267.11633 * 15 12 11 49 49 H 1.08995 * 109.46887 * 60.12811 * 18 16 7 50 50 H 1.08992 * 109.46977 * 300.12484 * 18 16 7 51 51 H 1.09002 * 109.47045 * 55.99601 * 19 18 16 52 52 H 1.09006 * 109.47165 * 296.00151 * 19 18 16 53 53 H 0.96999 * 119.99890 * 359.72722 * 20 19 18 54 54 H 0.97009 * 119.99510 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0409 -0.7231 -1.2482 5 6 1.5030 -2.1559 -1.2657 6 6 2.0141 -2.9040 -0.0305 7 7 1.6543 -2.1389 1.1716 8 6 0.9794 -2.7230 2.1815 9 8 0.6032 -2.0569 3.1269 10 6 0.6978 -4.1662 2.1402 11 6 0.1485 -4.7669 3.1919 12 6 -0.0651 -3.9998 4.4714 13 6 -1.1648 -2.9567 4.2631 14 6 -0.4823 -4.9660 5.5818 15 6 1.2351 -3.2977 4.8681 16 6 2.0413 -0.7236 1.2497 17 1 3.1272 -0.6440 1.2995 18 6 1.4228 -0.0909 2.4980 19 6 1.8248 1.3833 2.5750 20 7 1.1562 2.0128 3.7164 21 6 1.3651 3.3390 3.9862 22 1 2.0226 3.9209 3.3573 23 6 0.7311 3.9356 5.0674 24 7 -0.0705 3.2264 5.8334 25 14 1.0167 5.7445 5.4359 26 1 0.0101 6.5620 4.7122 27 1 0.8871 5.9785 6.8965 28 1 2.3800 6.1308 4.9916 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6988 -0.1960 -2.1388 33 1 3.1306 -0.7447 -1.2351 34 1 0.4133 -2.1355 -1.2539 35 1 1.8482 -2.6630 -2.1668 36 1 1.5554 -3.8918 0.0141 37 1 3.0976 -3.0065 -0.0877 38 1 0.9370 -4.7380 1.2557 39 1 -0.1445 -5.8045 3.1291 40 1 -2.1168 -3.3581 4.6104 41 1 -0.9228 -2.0559 4.8271 42 1 -1.2384 -2.7129 3.2032 43 1 0.3012 -5.7091 5.7302 44 1 -0.6372 -4.4111 6.5070 45 1 -1.4086 -5.4662 5.2991 46 1 1.8283 -3.0998 3.9753 47 1 1.0025 -2.3562 5.3659 48 1 1.8010 -3.9368 5.5459 49 1 1.7817 -0.6122 3.3853 50 1 0.3370 -0.1691 2.4449 51 1 1.5286 1.8892 1.6561 52 1 2.9051 1.4593 2.6995 53 1 0.5620 1.4912 4.2784 54 1 -0.5133 3.6433 6.5892 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689042427.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:45 Heat of formation + Delta-G solvation = 10.620441 kcal Electronic energy + Delta-G solvation = -30137.473335 eV Core-core repulsion = 26496.798378 eV Total energy + Delta-G solvation = -3640.674957 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.08717 -39.84055 -37.23423 -36.97161 -34.99618 -34.04535 -32.62661 -32.21591 -29.81217 -28.12850 -28.04894 -27.81986 -26.55998 -25.26674 -24.42838 -23.31898 -22.07663 -21.24843 -19.74548 -19.25270 -18.47322 -17.70207 -17.16768 -16.81693 -16.37225 -16.29615 -15.58280 -15.52752 -15.26399 -15.12063 -14.97774 -14.77448 -14.67897 -14.48807 -14.16973 -14.12230 -13.54829 -13.40432 -13.12547 -13.01118 -12.92077 -12.86647 -12.66332 -12.43492 -12.38336 -12.30510 -12.13372 -11.99749 -11.79815 -11.75777 -11.68968 -11.59415 -11.53405 -11.40460 -11.26297 -11.14817 -10.89279 -10.18735 -9.55625 -9.19582 -8.99790 -7.95197 -5.25080 0.58453 1.43069 1.46743 1.55192 2.17595 2.49470 2.54855 3.37072 3.58576 3.74418 3.84213 3.91027 3.94818 4.08358 4.15110 4.17096 4.24469 4.27684 4.40661 4.50001 4.53285 4.58543 4.64161 4.69366 4.74229 4.79240 4.81000 4.84305 4.86568 4.88281 4.95217 4.96036 5.00102 5.05539 5.13387 5.23957 5.24463 5.25360 5.28154 5.31554 5.33930 5.42223 5.43695 5.49236 5.54714 5.56463 5.60925 5.62640 5.79942 5.88400 6.25994 6.70427 7.30825 7.49603 8.09136 8.33325 9.28811 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.010445 B = 0.004457 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.067179 B = 6281.020815 C = 8475.950288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.102 4.102 3 H 0.070 0.930 4 C -0.109 4.109 5 C -0.132 4.132 6 C 0.102 3.898 7 N -0.604 5.604 8 C 0.512 3.488 9 O -0.530 6.530 10 C -0.227 4.227 11 C -0.046 4.046 12 C -0.040 4.040 13 C -0.098 4.098 14 C -0.138 4.138 15 C -0.112 4.112 16 C 0.164 3.836 17 H 0.070 0.930 18 C -0.085 4.085 19 C 0.146 3.854 20 N -0.745 5.745 21 C -0.247 4.247 22 H 0.075 0.925 23 C -0.079 4.079 24 N -0.972 5.972 25 Si 0.978 3.022 26 H -0.285 1.285 27 H -0.294 1.294 28 H -0.267 1.267 29 H 0.026 0.974 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.039 0.961 41 H 0.025 0.975 42 H 0.048 0.952 43 H 0.068 0.932 44 H 0.043 0.957 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.024 0.976 48 H 0.036 0.964 49 H 0.057 0.943 50 H 0.058 0.942 51 H 0.021 0.979 52 H 0.008 0.992 53 H 0.370 0.630 54 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.456 -22.811 -16.110 28.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.122 4.122 3 H 0.088 0.912 4 C -0.147 4.147 5 C -0.170 4.170 6 C -0.019 4.019 7 N -0.337 5.337 8 C 0.304 3.696 9 O -0.410 6.410 10 C -0.247 4.247 11 C -0.066 4.066 12 C -0.040 4.040 13 C -0.155 4.155 14 C -0.195 4.195 15 C -0.169 4.169 16 C 0.060 3.940 17 H 0.088 0.912 18 C -0.123 4.123 19 C 0.019 3.981 20 N -0.386 5.386 21 C -0.379 4.379 22 H 0.093 0.907 23 C -0.271 4.271 24 N -0.623 5.623 25 Si 0.806 3.194 26 H -0.211 1.211 27 H -0.220 1.220 28 H -0.192 1.192 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.179 0.821 39 H 0.176 0.824 40 H 0.058 0.942 41 H 0.044 0.956 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.088 0.912 46 H 0.077 0.923 47 H 0.043 0.957 48 H 0.055 0.945 49 H 0.076 0.924 50 H 0.077 0.923 51 H 0.039 0.961 52 H 0.026 0.974 53 H 0.201 0.799 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.371 -22.297 -15.669 27.460 hybrid contribution -0.260 1.473 0.937 1.765 sum 3.111 -20.824 -14.732 25.697 Atomic orbital electron populations 1.21757 0.95627 1.01340 1.00566 1.21522 0.96041 0.99463 0.95150 0.91180 1.21529 1.00898 0.96040 0.96201 1.21956 1.01227 0.95487 0.98330 1.22058 1.01255 0.95711 0.82907 1.48096 1.56369 1.10272 1.18991 1.19120 0.78604 0.89806 0.82021 1.91117 1.50252 1.65529 1.34064 1.22886 1.06804 0.92843 1.02158 1.24053 0.90097 1.00137 0.92288 1.19641 0.95627 0.94685 0.94055 1.21748 0.95776 0.96900 1.01125 1.21981 1.01929 0.98308 0.97262 1.22128 0.96524 0.97927 1.00330 1.21024 0.97881 0.80570 0.94486 0.91209 1.21953 1.00768 0.92374 0.97228 1.21019 0.94117 0.93630 0.89360 1.42582 1.55036 1.08385 1.32639 1.19679 1.21804 0.87577 1.08808 0.90709 1.25653 1.00249 1.02791 0.98366 1.69876 1.35376 1.37077 1.19948 0.85076 0.78128 0.79592 0.76591 1.21149 1.22013 1.19220 0.95456 0.92189 0.92401 0.90948 0.90947 0.91942 0.88164 0.87405 0.90279 0.82131 0.82388 0.94169 0.95629 0.93313 0.91326 0.93759 0.91167 0.92332 0.95716 0.94541 0.92415 0.92302 0.96080 0.97389 0.79903 0.94069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 8.20 71.98 0.59 -3.15 16 2 C -0.10 -2.54 2.30 -10.72 -0.02 -2.56 16 3 H 0.07 1.94 6.68 -2.39 -0.02 1.93 16 4 C -0.11 -1.78 5.43 30.62 0.17 -1.62 16 5 C -0.13 -1.64 5.74 30.67 0.18 -1.46 16 6 C 0.10 1.35 6.31 86.35 0.55 1.90 16 7 N -0.60 -13.70 2.43 -799.16 -1.94 -15.64 16 8 C 0.51 13.35 5.59 86.57 0.48 13.83 16 9 O -0.53 -18.18 3.91 -4.08 -0.02 -18.20 16 10 C -0.23 -4.07 8.81 23.43 0.21 -3.86 16 11 C -0.05 -0.82 8.50 24.52 0.21 -0.62 16 12 C -0.04 -0.98 0.75 -52.93 -0.04 -1.02 16 13 C -0.10 -3.03 7.62 71.98 0.55 -2.48 16 14 C -0.14 -2.72 8.01 71.98 0.58 -2.14 16 15 C -0.11 -3.40 7.52 71.98 0.54 -2.86 16 16 C 0.16 4.61 2.71 44.98 0.12 4.74 16 17 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 18 C -0.09 -3.32 2.76 30.60 0.08 -3.23 16 19 C 0.15 6.64 6.03 86.38 0.52 7.17 16 20 N -0.74 -42.86 5.60 -343.45 -1.92 -44.78 16 21 C -0.25 -15.04 9.99 84.03 0.84 -14.20 16 22 H 0.07 4.34 7.83 -2.91 -0.02 4.32 16 23 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 24 N -0.97 -64.14 13.06 21.65 0.28 -63.86 16 25 Si 0.98 48.87 29.55 68.60 2.03 50.90 16 26 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 27 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 28 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 29 H 0.03 0.96 6.35 -2.38 -0.02 0.94 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.50 5.98 -2.39 -0.01 1.49 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 0.92 6.33 -2.39 -0.02 0.90 16 35 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.11 0.92 5.38 -2.38 -0.01 0.90 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.16 1.62 5.91 -2.91 -0.02 1.61 16 39 H 0.16 1.64 8.00 -2.91 -0.02 1.62 16 40 H 0.04 1.09 7.74 -2.39 -0.02 1.07 16 41 H 0.02 0.97 6.90 -2.39 -0.02 0.96 16 42 H 0.05 1.58 5.82 -2.38 -0.01 1.56 16 43 H 0.07 1.12 8.11 -2.39 -0.02 1.10 16 44 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.07 1.13 8.12 -2.39 -0.02 1.11 16 46 H 0.06 1.83 4.50 -2.40 -0.01 1.82 16 47 H 0.02 0.92 7.02 -2.39 -0.02 0.91 16 48 H 0.04 0.98 7.78 -2.39 -0.02 0.96 16 49 H 0.06 2.53 6.44 -2.39 -0.02 2.52 16 50 H 0.06 2.56 5.22 -2.39 -0.01 2.55 16 51 H 0.02 0.95 6.37 -2.39 -0.02 0.93 16 52 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 53 H 0.37 23.15 7.67 -92.71 -0.71 22.44 16 54 H 0.25 15.90 8.31 -92.70 -0.77 15.13 16 Total: -1.00 -75.98 385.25 4.61 -71.36 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: 0.17 Total: 36.18 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: 6.01 Total: -15.97 kcal Atomic # 7 Polarization: -120.69 SS G_CDS: -3.58 Total: -124.27 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.02 Total: -18.20 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 2.03 Total: 50.90 kcal Total: -75.98 4.61 -71.36 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689042427.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.983 kcal (2) G-P(sol) polarization free energy of solvation -75.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds