Wall clock time and date at job start Tue Mar 31 2020 15:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.50109 * 2 1 4 4 C 1.53035 * 109.49880 * 239.93210 * 2 1 3 5 5 C 1.53039 * 109.53862 * 301.41537 * 4 2 1 6 6 C 1.53191 * 109.31147 * 298.63517 * 5 4 2 7 7 N 1.46921 * 108.77786 * 54.63334 * 6 5 4 8 8 C 1.34780 * 120.62824 * 126.36751 * 7 6 5 9 9 O 1.21279 * 119.99959 * 176.23658 * 8 7 6 10 10 C 1.50695 * 120.00376 * 356.23030 * 8 7 6 11 11 C 1.54893 * 110.48502 * 63.24546 * 10 8 7 12 12 C 1.55227 * 102.59239 * 156.67513 * 11 10 8 13 13 C 1.54264 * 104.23266 * 322.08648 * 12 11 10 14 14 C 1.53871 * 106.59997 * 23.60786 * 13 12 11 15 15 C 1.46921 * 118.74039 * 306.64320 * 7 6 5 16 16 H 1.09000 * 109.58669 * 293.56774 * 15 7 6 17 17 C 1.53005 * 109.58911 * 173.14062 * 15 7 6 18 18 C 1.52998 * 109.47160 * 181.71671 * 17 15 7 19 19 C 1.52994 * 109.46864 * 185.12614 * 18 17 15 20 20 N 1.46506 * 109.47253 * 179.97438 * 19 18 17 21 21 C 1.36937 * 120.00377 * 179.97438 * 20 19 18 22 22 H 1.07998 * 119.99722 * 0.02562 * 21 20 19 23 23 C 1.38810 * 120.00143 * 179.97438 * 21 20 19 24 24 N 1.31619 * 120.00144 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99752 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47195 * 89.99844 * 25 23 21 27 27 H 1.48508 * 109.47018 * 209.99464 * 25 23 21 28 28 H 1.48498 * 109.47412 * 329.99936 * 25 23 21 29 29 H 1.08999 * 109.47390 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47103 * 300.06893 * 1 2 3 31 31 H 1.09003 * 109.46825 * 60.06441 * 1 2 3 32 32 H 1.09002 * 109.45769 * 181.39671 * 4 2 1 33 33 H 1.08999 * 109.45147 * 61.42981 * 4 2 1 34 34 H 1.08999 * 109.49864 * 178.68183 * 5 4 2 35 35 H 1.08996 * 109.49961 * 58.58694 * 5 4 2 36 36 H 1.09000 * 109.58940 * 294.84423 * 6 5 4 37 37 H 1.09000 * 109.70153 * 174.49562 * 6 5 4 38 38 H 1.08996 * 110.43616 * 300.71003 * 10 8 7 39 39 H 1.09006 * 110.75573 * 275.07128 * 11 10 8 40 40 H 1.09003 * 110.75571 * 38.43623 * 11 10 8 41 41 H 1.09000 * 110.47493 * 203.38992 * 12 11 10 42 42 H 1.09003 * 110.58395 * 80.83014 * 12 11 10 43 43 H 1.09002 * 110.03477 * 264.32454 * 13 12 11 44 44 H 1.09000 * 110.07889 * 142.91372 * 13 12 11 45 45 H 1.08997 * 110.03453 * 240.71865 * 14 13 12 46 46 H 1.09000 * 110.07481 * 119.30388 * 14 13 12 47 47 H 1.08999 * 109.46694 * 301.71306 * 17 15 7 48 48 H 1.08999 * 109.46694 * 61.71293 * 17 15 7 49 49 H 1.09008 * 109.46957 * 305.12050 * 18 17 15 50 50 H 1.08994 * 109.47190 * 65.12290 * 18 17 15 51 51 H 1.09000 * 109.47391 * 299.99133 * 19 18 17 52 52 H 1.08995 * 109.47949 * 59.99601 * 19 18 17 53 53 H 0.97002 * 119.99638 * 359.97438 * 20 19 18 54 54 H 0.96996 * 119.99755 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0408 -0.7228 -1.2485 5 6 1.5030 -2.1554 -1.2665 6 6 2.0140 -2.9039 -0.0314 7 7 1.6515 -2.1384 1.1691 8 6 0.9739 -2.7224 2.1772 9 8 0.7402 -2.0998 3.1914 10 6 0.5066 -4.1489 2.0443 11 6 1.7173 -5.1056 1.9100 12 6 1.1327 -6.4607 2.3912 13 6 0.1973 -6.0779 3.5566 14 6 -0.2007 -4.6080 3.3361 15 6 2.0364 -0.7227 1.2471 16 1 3.1222 -0.6414 1.2975 17 6 1.4134 -0.0896 2.4929 18 6 1.7805 1.3947 2.5486 19 6 1.2664 1.9984 3.8570 20 7 1.6185 3.4195 3.9108 21 6 1.2592 4.1734 4.9959 22 1 0.7165 3.7203 5.8124 23 6 1.5933 5.5197 5.0470 24 7 1.2483 6.2443 6.0903 25 14 2.5324 6.3032 3.6351 26 1 1.5712 6.8348 2.6358 27 1 3.3713 7.4132 4.1542 28 1 3.4014 5.2845 2.9929 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3633 0.5129 -0.8906 32 1 3.1305 -0.7441 -1.2353 33 1 1.6986 -0.1952 -2.1388 34 1 1.8481 -2.6623 -2.1677 35 1 0.4133 -2.1352 -1.2546 36 1 3.0979 -3.0043 -0.0874 37 1 1.5575 -3.8927 0.0140 38 1 -0.1587 -4.2531 1.1873 39 1 2.0455 -5.1701 0.8725 40 1 2.5353 -4.7865 2.5559 41 1 1.9296 -7.1169 2.7412 42 1 0.5687 -6.9404 1.5912 43 1 0.7214 -6.1843 4.5064 44 1 -0.6903 -6.7104 3.5473 45 1 0.1302 -4.0011 4.1789 46 1 -1.2814 -4.5265 3.2191 47 1 0.3293 -0.1943 2.4500 48 1 1.7920 -0.5913 3.3834 49 1 2.8641 1.5030 2.4996 50 1 1.3250 1.9136 1.7053 51 1 0.1829 1.8902 3.9061 52 1 1.7219 1.4795 4.7004 53 1 2.1062 3.8263 3.1776 54 1 1.4815 7.1851 6.1258 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689115004.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:23 Heat of formation + Delta-G solvation = -51.709430 kcal Electronic energy + Delta-G solvation = -29131.857364 eV Core-core repulsion = 25488.479582 eV Total energy + Delta-G solvation = -3643.377783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.01229 -39.43676 -37.93057 -37.41232 -35.35739 -34.34081 -33.39048 -31.30748 -30.40293 -29.57992 -28.22388 -27.28929 -25.72258 -24.52662 -23.31946 -22.50825 -22.05361 -21.28929 -20.31721 -19.64653 -19.34895 -18.00675 -17.24240 -16.89166 -16.69410 -16.51152 -15.84608 -15.73028 -15.52301 -15.30221 -15.14796 -14.86220 -14.80748 -14.33848 -14.16484 -14.02559 -13.84639 -13.68457 -13.27803 -13.06616 -12.86169 -12.81578 -12.67324 -12.39005 -12.32686 -12.13617 -12.11046 -12.03154 -12.00821 -11.90137 -11.80584 -11.71014 -11.61934 -11.50738 -11.32896 -11.23050 -11.10470 -10.99840 -9.90286 -9.46409 -9.36305 -8.07162 -5.42239 1.34198 1.39808 1.47496 1.71418 2.03841 2.45509 3.23057 3.38937 3.54489 3.65020 3.76185 3.81024 3.83271 3.93939 4.09775 4.14688 4.19673 4.23281 4.28288 4.43696 4.47327 4.53209 4.57738 4.58256 4.62093 4.65448 4.66584 4.68474 4.78791 4.81764 4.87193 4.89235 4.97734 5.00941 5.04383 5.07566 5.11091 5.14829 5.23799 5.23872 5.26173 5.30444 5.32641 5.37843 5.43615 5.49136 5.51768 5.56325 5.69467 5.80168 6.16852 6.54717 7.02418 7.32343 7.77010 8.00654 9.14782 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.016052 B = 0.002997 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.880757 B = 9340.962473 C =10663.475079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 H 0.078 0.922 4 C -0.112 4.112 5 C -0.134 4.134 6 C 0.094 3.906 7 N -0.602 5.602 8 C 0.508 3.492 9 O -0.572 6.572 10 C -0.109 4.109 11 C -0.113 4.113 12 C -0.118 4.118 13 C -0.124 4.124 14 C -0.117 4.117 15 C 0.155 3.845 16 H 0.073 0.927 17 C -0.090 4.090 18 C -0.120 4.120 19 C 0.160 3.840 20 N -0.758 5.758 21 C -0.245 4.245 22 H 0.048 0.952 23 C -0.066 4.066 24 N -0.985 5.985 25 Si 0.965 3.035 26 H -0.273 1.273 27 H -0.290 1.290 28 H -0.250 1.250 29 H 0.056 0.944 30 H 0.035 0.965 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.049 0.951 46 H 0.064 0.936 47 H 0.056 0.944 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.069 0.931 51 H 0.011 0.989 52 H 0.010 0.990 53 H 0.368 0.632 54 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.499 -30.863 -22.805 38.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.097 0.903 4 C -0.149 4.149 5 C -0.172 4.172 6 C -0.027 4.027 7 N -0.334 5.334 8 C 0.298 3.702 9 O -0.452 6.452 10 C -0.130 4.130 11 C -0.151 4.151 12 C -0.155 4.155 13 C -0.162 4.162 14 C -0.155 4.155 15 C 0.052 3.948 16 H 0.091 0.909 17 C -0.128 4.128 18 C -0.158 4.158 19 C 0.034 3.966 20 N -0.404 5.404 21 C -0.376 4.376 22 H 0.066 0.934 23 C -0.258 4.258 24 N -0.635 5.635 25 Si 0.790 3.210 26 H -0.199 1.199 27 H -0.217 1.217 28 H -0.174 1.174 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.130 0.870 38 H 0.137 0.863 39 H 0.123 0.877 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.068 0.932 46 H 0.083 0.917 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.088 0.912 51 H 0.029 0.971 52 H 0.028 0.972 53 H 0.202 0.798 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.284 -30.532 -22.071 37.743 hybrid contribution 0.122 1.352 0.378 1.409 sum 2.406 -29.180 -21.693 36.440 Atomic orbital electron populations 1.21845 0.95425 1.01592 1.01141 1.21478 0.96262 0.99800 0.94794 0.90347 1.21544 1.00910 0.96009 0.96481 1.21977 1.01429 0.95584 0.98214 1.22296 1.01516 0.96003 0.82882 1.48170 1.55802 1.10525 1.18888 1.21183 0.77015 0.89643 0.82404 1.90781 1.57868 1.65182 1.31342 1.22224 0.99651 0.90175 1.00958 1.22778 0.95258 0.93997 1.03031 1.22416 0.98815 0.96369 0.97903 1.22146 1.00143 0.94692 0.99204 1.22058 0.99995 0.96817 0.96602 1.21138 0.98410 0.80298 0.94928 0.90867 1.21840 1.00756 0.92321 0.97874 1.21818 1.00962 0.96758 0.96258 1.20661 0.96446 0.82852 0.96691 1.42712 1.69073 1.07260 1.21310 1.19052 1.29263 0.92078 0.97195 0.93431 1.25639 1.02478 0.96713 1.00926 1.69908 1.53648 1.07689 1.32246 0.85271 0.78785 0.78102 0.78804 1.19931 1.21672 1.17425 0.92474 0.94542 0.91958 0.91064 0.90892 0.88256 0.91603 0.90007 0.86963 0.86321 0.87723 0.92536 0.90673 0.89545 0.92569 0.90667 0.93175 0.91718 0.92523 0.91668 0.91618 0.91212 0.97086 0.97200 0.79845 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.15 71.98 0.59 -2.35 16 2 C -0.10 -1.93 2.25 -10.86 -0.02 -1.96 16 3 H 0.08 1.58 6.85 -2.39 -0.02 1.57 16 4 C -0.11 -1.33 5.43 30.62 0.17 -1.16 16 5 C -0.13 -1.11 5.74 30.67 0.18 -0.94 16 6 C 0.09 0.87 5.58 86.36 0.48 1.36 16 7 N -0.60 -10.97 2.42 -795.83 -1.92 -12.90 16 8 C 0.51 11.62 6.95 87.66 0.61 12.23 16 9 O -0.57 -18.91 10.95 -3.03 -0.03 -18.94 16 10 C -0.11 -1.64 2.32 -10.46 -0.02 -1.67 16 11 C -0.11 -1.15 5.44 32.01 0.17 -0.97 16 12 C -0.12 -1.01 6.84 31.79 0.22 -0.79 16 13 C -0.12 -1.62 6.80 31.32 0.21 -1.41 16 14 C -0.12 -2.15 6.17 31.32 0.19 -1.95 16 15 C 0.16 3.45 2.72 44.84 0.12 3.57 16 16 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 17 C -0.09 -2.78 2.63 30.60 0.08 -2.70 16 18 C -0.12 -4.05 4.74 30.59 0.14 -3.91 16 19 C 0.16 7.23 6.26 86.38 0.54 7.77 16 20 N -0.76 -39.63 5.41 -343.46 -1.86 -41.48 16 21 C -0.25 -15.37 10.47 84.03 0.88 -14.49 16 22 H 0.05 3.30 8.06 -2.91 -0.02 3.27 16 23 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 24 N -0.98 -66.30 13.97 21.65 0.30 -65.99 16 25 Si 0.96 47.46 27.74 68.60 1.90 49.37 16 26 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 27 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 28 H -0.25 -11.07 6.52 99.48 0.65 -10.42 16 29 H 0.06 1.11 5.97 -2.39 -0.01 1.10 16 30 H 0.04 0.95 6.10 -2.39 -0.01 0.94 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.07 0.66 6.33 -2.39 -0.02 0.64 16 36 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.11 0.58 4.10 -2.39 -0.01 0.57 16 38 H 0.12 1.27 7.84 -2.39 -0.02 1.25 16 39 H 0.10 0.47 5.94 -2.38 -0.01 0.46 16 40 H 0.06 0.79 8.05 -2.39 -0.02 0.77 16 41 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.05 1.28 6.88 -2.39 -0.02 1.27 16 46 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.06 1.95 5.47 -2.39 -0.01 1.94 16 48 H 0.06 2.38 6.27 -2.39 -0.01 2.37 16 49 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 50 H 0.07 2.22 6.59 -2.39 -0.02 2.20 16 51 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 52 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 53 H 0.37 17.80 5.53 -92.71 -0.51 17.29 16 54 H 0.26 16.47 8.31 -92.71 -0.77 15.70 16 Total: -1.00 -79.65 387.49 3.70 -75.95 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.30 Total: 27.06 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: 5.01 Total: -13.06 kcal Atomic # 7 Polarization: -116.90 SS G_CDS: -3.48 Total: -120.38 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.03 Total: -18.94 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 1.90 Total: 49.37 kcal Total: -79.65 3.70 -75.95 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689115004.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.243 kcal (2) G-P(sol) polarization free energy of solvation -79.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds