Wall clock time and date at job start Tue Mar 31 2020 15:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.43323 * 2 1 4 4 C 1.54893 * 110.48533 * 122.68036 * 2 1 3 5 5 C 1.55011 * 102.75561 * 156.63307 * 4 2 1 6 6 C 1.54267 * 104.13762 * 322.05251 * 5 4 2 7 7 C 1.52998 * 110.03895 * 142.93087 * 6 5 4 8 8 C 1.50708 * 110.02868 * 264.31473 * 6 5 4 9 9 O 1.21275 * 119.99902 * 7.61939 * 8 6 5 10 10 N 1.34776 * 119.99592 * 187.61954 * 8 6 5 11 11 C 1.46502 * 119.99820 * 174.82265 * 10 8 6 12 12 C 1.52995 * 109.47425 * 179.97438 * 11 10 8 13 13 H 1.08999 * 112.90503 * 316.24433 * 12 11 10 14 14 C 1.53787 * 113.61676 * 87.49539 * 12 11 10 15 15 C 1.53786 * 87.07869 * 139.98366 * 14 12 11 16 16 H 1.08998 * 113.61097 * 220.01883 * 15 14 12 17 17 N 1.46503 * 113.61443 * 89.11862 * 15 14 12 18 18 C 1.36934 * 119.99724 * 107.49723 * 17 15 14 19 19 H 1.07998 * 120.00675 * 0.02562 * 18 17 15 20 20 C 1.38819 * 119.99668 * 179.97438 * 18 17 15 21 21 N 1.31620 * 119.99748 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99809 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47552 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46838 * 120.00468 * 22 20 18 25 25 H 1.48499 * 109.47424 * 240.00327 * 22 20 18 26 26 C 1.53779 * 87.08228 * 334.56998 * 15 14 12 27 27 C 1.53880 * 106.64064 * 23.61557 * 6 5 4 28 28 C 1.53003 * 110.02917 * 119.26338 * 27 6 5 29 29 C 1.52993 * 110.03708 * 240.69579 * 27 6 5 30 30 H 1.09007 * 109.47282 * 182.54602 * 1 2 3 31 31 H 1.09002 * 109.47522 * 302.54439 * 1 2 3 32 32 H 1.09001 * 109.47337 * 62.54550 * 1 2 3 33 33 H 1.09008 * 110.75573 * 274.93702 * 4 2 1 34 34 H 1.08997 * 110.75457 * 38.30881 * 4 2 1 35 35 H 1.08993 * 110.52650 * 203.38391 * 5 4 2 36 36 H 1.09006 * 110.50610 * 80.69689 * 5 4 2 37 37 H 1.09000 * 109.47232 * 182.09089 * 7 6 5 38 38 H 1.09002 * 109.47022 * 302.09112 * 7 6 5 39 39 H 1.09001 * 109.46913 * 62.08882 * 7 6 5 40 40 H 0.97001 * 120.00563 * 354.80852 * 10 8 6 41 41 H 1.08995 * 109.47712 * 59.98953 * 11 10 8 42 42 H 1.09005 * 109.46668 * 299.99486 * 11 10 8 43 43 H 1.09002 * 113.61411 * 254.53118 * 14 12 11 44 44 H 1.08998 * 113.61044 * 25.43648 * 14 12 11 45 45 H 0.96995 * 119.99870 * 287.50538 * 17 15 14 46 46 H 0.97001 * 119.99453 * 179.97438 * 21 20 18 47 47 H 1.09004 * 113.61360 * 270.88394 * 26 15 14 48 48 H 1.08993 * 113.61699 * 139.98214 * 26 15 14 49 49 H 1.09007 * 109.47009 * 60.00118 * 28 27 6 50 50 H 1.09001 * 109.47240 * 180.02562 * 28 27 6 51 51 H 1.09000 * 109.47121 * 300.00386 * 28 27 6 52 52 H 1.09000 * 109.47342 * 62.63710 * 29 27 6 53 53 H 1.09003 * 109.47450 * 182.63859 * 29 27 6 54 54 H 1.08999 * 109.47268 * 302.63788 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0721 -0.7835 1.2213 5 6 3.4919 -1.1990 0.7586 6 6 3.3166 -1.5396 -0.7358 7 6 4.5463 -1.0855 -1.5248 8 6 3.1129 -3.0230 -0.9067 9 8 2.9679 -3.7313 0.0670 10 7 3.0918 -3.5624 -2.1416 11 6 3.0078 -5.0159 -2.3047 12 6 2.9996 -5.3623 -3.7949 13 1 2.3469 -4.7125 -4.3779 14 6 4.4052 -5.5245 -4.3975 15 6 3.8416 -6.7144 -5.1920 16 1 4.5271 -7.5592 -5.2582 17 7 3.2737 -6.3379 -6.4890 18 6 3.9357 -6.6565 -7.6446 19 1 4.8761 -7.1856 -7.6001 20 6 3.3974 -6.3002 -8.8736 21 7 2.2510 -5.6557 -8.9279 22 14 4.3000 -6.7353 -10.4500 23 1 5.5563 -7.4544 -10.1189 24 1 3.4383 -7.6060 -11.2895 25 1 4.6225 -5.4920 -11.1952 26 6 2.7911 -6.8593 -4.0783 27 6 2.0699 -0.7774 -1.2181 28 6 2.4506 0.1968 -2.3348 29 6 1.0139 -1.7641 -1.7202 30 1 -0.3634 -1.0267 0.0457 31 1 -0.3634 0.5528 0.8663 32 1 -0.3634 0.4738 -0.9119 33 1 2.1251 -0.1406 2.1001 34 1 1.4580 -1.6618 1.4203 35 1 3.8334 -2.0739 1.3117 36 1 4.1910 -0.3718 0.8817 37 1 4.3971 -1.2968 -2.5836 38 1 4.6925 -0.0144 -1.3850 39 1 5.4255 -1.6219 -1.1676 40 1 3.1321 -2.9883 -2.9225 41 1 2.0909 -5.3811 -1.8421 42 1 3.8677 -5.4854 -1.8269 43 1 4.7110 -4.6866 -5.0241 44 1 5.1633 -5.8070 -3.6671 45 1 2.4290 -5.8629 -6.5291 46 1 1.8751 -5.4064 -9.7867 47 1 3.1080 -7.5068 -3.2607 48 1 1.7939 -7.0991 -4.4472 49 1 2.8774 -0.3575 -3.1707 50 1 1.5617 0.7317 -2.6691 51 1 3.1842 0.9105 -1.9598 52 1 0.6973 -2.4067 -0.8986 53 1 0.1545 -1.2133 -2.1026 54 1 1.4375 -2.3754 -2.5170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691172403.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:45 Heat of formation + Delta-G solvation = -40.200435 kcal Electronic energy + Delta-G solvation = -29045.638201 eV Core-core repulsion = 25402.759486 eV Total energy + Delta-G solvation = -3642.878715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.24000 -40.24091 -39.00450 -36.09629 -35.07805 -33.93799 -33.10200 -32.01082 -29.26317 -29.08752 -27.85726 -26.44390 -25.73803 -25.06423 -24.53937 -23.35856 -22.35778 -20.82213 -19.88801 -19.38171 -19.01381 -17.58546 -17.25367 -16.70032 -16.66568 -16.28396 -15.99567 -15.74076 -15.27493 -15.01242 -14.71533 -14.64378 -14.46477 -14.31239 -14.14540 -13.89267 -13.68955 -13.34825 -13.27642 -13.22119 -12.95429 -12.91820 -12.71735 -12.55947 -12.47780 -12.20072 -12.13522 -12.05993 -11.99965 -11.70959 -11.59579 -11.51619 -11.47773 -11.35474 -11.31705 -11.09887 -10.95284 -10.86027 -10.49496 -9.92939 -9.00063 -7.95496 -5.23663 1.47996 1.48508 1.58425 1.68686 2.25600 2.55596 3.37200 3.41473 3.50490 3.61985 3.71349 3.79136 3.86030 4.05533 4.15797 4.18624 4.26245 4.31613 4.34635 4.35549 4.39877 4.44258 4.53460 4.66224 4.70664 4.73609 4.76486 4.81732 4.86414 4.90809 4.91771 4.92554 4.98366 5.02188 5.07988 5.10630 5.15289 5.18068 5.23424 5.26105 5.28158 5.30437 5.35030 5.37499 5.46337 5.50869 5.54482 5.57147 5.61979 5.65983 6.28286 6.58230 7.27770 7.33383 8.10098 8.32732 9.27925 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.018947 B = 0.002682 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.482574 B =10436.597478 C =10972.286523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 H 0.094 0.906 4 C -0.117 4.117 5 C -0.106 4.106 6 C -0.076 4.076 7 C -0.140 4.140 8 C 0.529 3.471 9 O -0.584 6.584 10 N -0.718 5.718 11 C 0.140 3.860 12 C -0.100 4.100 13 H 0.080 0.920 14 C -0.152 4.152 15 C 0.145 3.855 16 H 0.059 0.941 17 N -0.719 5.719 18 C -0.241 4.241 19 H 0.076 0.924 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.971 3.029 23 H -0.267 1.267 24 H -0.295 1.295 25 H -0.293 1.293 26 C -0.136 4.136 27 C -0.046 4.046 28 C -0.142 4.142 29 C -0.156 4.156 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.052 0.948 40 H 0.408 0.592 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.049 0.951 44 H 0.090 0.910 45 H 0.374 0.626 46 H 0.251 0.749 47 H 0.103 0.897 48 H 0.056 0.944 49 H 0.058 0.942 50 H 0.061 0.939 51 H 0.076 0.924 52 H 0.037 0.963 53 H 0.069 0.931 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.995 14.326 19.846 24.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 H 0.112 0.888 4 C -0.155 4.155 5 C -0.143 4.143 6 C -0.079 4.079 7 C -0.198 4.198 8 C 0.317 3.683 9 O -0.464 6.464 10 N -0.370 5.370 11 C 0.017 3.983 12 C -0.119 4.119 13 H 0.098 0.902 14 C -0.192 4.192 15 C 0.035 3.965 16 H 0.077 0.923 17 N -0.358 5.358 18 C -0.372 4.372 19 H 0.094 0.906 20 C -0.267 4.267 21 N -0.619 5.619 22 Si 0.801 3.199 23 H -0.191 1.191 24 H -0.222 1.222 25 H -0.220 1.220 26 C -0.175 4.175 27 C -0.047 4.047 28 C -0.199 4.199 29 C -0.213 4.213 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.245 0.755 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.109 0.891 45 H 0.207 0.793 46 H 0.060 0.940 47 H 0.122 0.878 48 H 0.075 0.925 49 H 0.077 0.923 50 H 0.080 0.920 51 H 0.095 0.905 52 H 0.056 0.944 53 H 0.088 0.912 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.056 13.704 20.380 24.581 hybrid contribution -0.200 -0.229 -1.439 1.470 sum 0.856 13.475 18.941 23.261 Atomic orbital electron populations 1.21874 0.94891 1.01400 1.02041 1.22050 0.95708 0.99292 0.92890 0.88821 1.22536 0.95516 0.99211 0.98212 1.22364 0.98203 1.01449 0.92315 1.21573 0.98052 0.89583 0.98655 1.22057 0.94829 1.03198 0.99666 1.20867 0.74141 0.90996 0.82295 1.90636 1.51416 1.64137 1.40219 1.46223 1.74444 1.08084 1.08254 1.21247 1.01288 0.80530 0.95270 1.22468 0.98332 0.97396 0.93728 0.90189 1.23699 0.95859 1.00294 0.99348 1.21369 0.95040 0.95609 0.84502 0.92266 1.42302 1.24981 1.67910 1.00570 1.19692 1.02931 1.29106 0.85512 0.90608 1.25534 0.98400 1.02011 1.00743 1.69816 1.20818 1.46632 1.24612 0.85102 0.77973 0.77012 0.79855 1.19098 1.22210 1.22029 1.23352 0.99665 0.95586 0.98907 1.21141 0.92295 0.94853 0.96398 1.22065 1.02111 0.98603 0.97127 1.22315 0.99541 0.98946 1.00503 0.93654 0.92077 0.92023 0.90109 0.93573 0.92475 0.88968 0.91510 0.88957 0.92934 0.75486 0.92465 0.91702 0.93207 0.89138 0.79349 0.94028 0.87825 0.92491 0.92261 0.92046 0.90504 0.94351 0.91180 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.02 71.98 0.58 -1.51 16 2 C -0.08 -1.17 2.91 -9.72 -0.03 -1.20 16 3 H 0.09 1.07 7.83 -2.39 -0.02 1.05 16 4 C -0.12 -2.01 6.33 31.93 0.20 -1.81 16 5 C -0.11 -1.93 5.66 31.71 0.18 -1.75 16 6 C -0.08 -1.40 0.81 -52.20 -0.04 -1.45 16 7 C -0.14 -2.09 7.00 71.98 0.50 -1.58 16 8 C 0.53 13.45 4.77 87.66 0.42 13.87 16 9 O -0.58 -19.34 15.48 -3.01 -0.05 -19.39 16 10 N -0.72 -16.99 3.88 -463.06 -1.80 -18.78 16 11 C 0.14 3.63 5.52 86.38 0.48 4.11 16 12 C -0.10 -2.88 3.63 -10.27 -0.04 -2.92 16 13 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 14 C -0.15 -4.77 7.43 31.12 0.23 -4.54 16 15 C 0.14 5.49 4.56 45.52 0.21 5.70 16 16 H 0.06 2.26 8.10 -2.39 -0.02 2.24 16 17 N -0.72 -35.33 5.31 -320.44 -1.70 -37.03 16 18 C -0.24 -13.12 9.97 84.04 0.84 -12.28 16 19 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 20 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 21 N -0.97 -58.19 13.06 21.65 0.28 -57.90 16 22 Si 0.97 45.48 29.55 68.60 2.03 47.51 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 25 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 26 C -0.14 -4.19 7.39 31.12 0.23 -3.96 16 27 C -0.05 -0.75 0.86 -51.46 -0.04 -0.79 16 28 C -0.14 -1.83 7.20 71.98 0.52 -1.32 16 29 C -0.16 -3.11 6.01 71.98 0.43 -2.67 16 30 H 0.04 0.79 6.50 -2.38 -0.02 0.77 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.81 7.71 -2.39 -0.02 0.79 16 33 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.05 1.02 8.04 -2.39 -0.02 1.00 16 35 H 0.06 1.34 6.96 -2.39 -0.02 1.32 16 36 H 0.09 1.26 7.85 -2.38 -0.02 1.24 16 37 H 0.07 0.97 5.93 -2.39 -0.01 0.96 16 38 H 0.09 0.99 6.68 -2.39 -0.02 0.97 16 39 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.41 8.65 6.59 -92.71 -0.61 8.03 16 41 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.06 1.70 7.85 -2.38 -0.02 1.68 16 43 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.09 2.46 7.90 -2.39 -0.02 2.44 16 45 H 0.37 19.69 7.90 -92.71 -0.73 18.95 16 46 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 47 H 0.10 2.66 8.10 -2.39 -0.02 2.64 16 48 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.06 0.80 6.76 -2.38 -0.02 0.79 16 50 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.08 0.77 6.70 -2.39 -0.02 0.75 16 52 H 0.04 0.92 6.85 -2.39 -0.02 0.90 16 53 H 0.07 1.26 7.01 -2.39 -0.02 1.24 16 54 H 0.06 1.25 5.23 -2.39 -0.01 1.24 16 Total: -1.00 -66.13 399.94 3.43 -62.70 By element: Atomic # 1 Polarization: 41.20 SS G_CDS: -0.46 Total: 40.74 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 5.13 Total: -17.84 kcal Atomic # 7 Polarization: -110.50 SS G_CDS: -3.22 Total: -113.72 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.05 Total: -19.39 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -66.13 3.43 -62.70 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691172403.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.499 kcal (2) G-P(sol) polarization free energy of solvation -66.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds