Wall clock time and date at job start Tue Mar 31 2020 15:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.49925 * 2 1 4 4 C 1.53045 * 109.52253 * 239.91651 * 2 1 3 5 5 C 1.53041 * 109.53830 * 301.40335 * 4 2 1 6 6 C 1.53633 * 109.24017 * 298.50712 * 5 4 2 7 7 N 1.46931 * 108.53989 * 54.86162 * 6 5 4 8 8 C 1.34771 * 120.63220 * 126.36893 * 7 6 5 9 9 O 1.21281 * 119.99968 * 174.35737 * 8 7 6 10 10 C 1.50703 * 120.00016 * 354.36211 * 8 7 6 11 11 C 1.52995 * 109.46993 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46825 * 179.97438 * 11 10 8 13 13 C 1.53779 * 113.61388 * 272.49503 * 12 11 10 14 14 C 1.53785 * 87.08147 * 220.02008 * 13 12 11 15 15 C 1.53776 * 87.07874 * 25.43718 * 14 13 12 16 16 C 1.46930 * 118.73545 * 306.09170 * 7 6 5 17 17 H 1.09009 * 109.58401 * 294.07581 * 16 7 6 18 18 C 1.52999 * 109.58359 * 173.65325 * 16 7 6 19 19 C 1.52998 * 109.46747 * 181.86828 * 18 16 7 20 20 N 1.46500 * 109.47090 * 185.10674 * 19 18 16 21 21 C 1.36934 * 120.00156 * 180.02562 * 20 19 18 22 22 H 1.07997 * 120.00452 * 359.97438 * 21 20 19 23 23 C 1.38815 * 120.00203 * 179.97438 * 21 20 19 24 24 N 1.31618 * 119.99776 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00432 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46645 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47062 * 119.99961 * 25 23 21 28 28 H 1.48499 * 109.47021 * 240.00278 * 25 23 21 29 29 H 1.09000 * 109.46539 * 299.93954 * 1 2 3 30 30 H 1.08999 * 109.46983 * 59.93352 * 1 2 3 31 31 H 1.08999 * 109.47425 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.45973 * 61.41672 * 4 2 1 33 33 H 1.08998 * 109.46285 * 181.39468 * 4 2 1 34 34 H 1.09005 * 109.50000 * 58.58207 * 5 4 2 35 35 H 1.08994 * 109.49982 * 178.68579 * 5 4 2 36 36 H 1.08997 * 109.73756 * 295.12151 * 6 5 4 37 37 H 1.08996 * 109.66200 * 174.54927 * 6 5 4 38 38 H 1.09000 * 109.46906 * 59.99951 * 10 8 7 39 39 H 1.08998 * 109.46993 * 299.99821 * 10 8 7 40 40 H 1.08998 * 109.47234 * 299.99831 * 11 10 8 41 41 H 1.09000 * 109.47205 * 60.00292 * 11 10 8 42 42 H 1.08993 * 112.85130 * 43.80787 * 12 11 10 43 43 H 1.08996 * 113.62047 * 334.57145 * 13 12 11 44 44 H 1.09003 * 113.61290 * 105.47246 * 13 12 11 45 45 H 1.09002 * 113.61383 * 270.88728 * 14 13 12 46 46 H 1.09003 * 113.61177 * 139.98655 * 14 13 12 47 47 H 1.09004 * 113.61108 * 220.01759 * 15 14 13 48 48 H 1.08998 * 113.61636 * 89.11821 * 15 14 13 49 49 H 1.08995 * 109.47003 * 301.86757 * 18 16 7 50 50 H 1.09002 * 109.47114 * 61.86885 * 18 16 7 51 51 H 1.09004 * 109.47618 * 305.10740 * 19 18 16 52 52 H 1.09000 * 109.47328 * 65.11226 * 19 18 16 53 53 H 0.96999 * 119.99972 * 359.97438 * 20 19 18 54 54 H 0.96998 * 120.00104 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0415 -0.7230 -1.2482 5 6 1.5042 -2.1559 -1.2658 6 6 2.0202 -2.9054 -0.0279 7 7 1.6521 -2.1380 1.1699 8 6 0.9753 -2.7221 2.1784 9 8 0.7666 -2.1089 3.2038 10 6 0.4780 -4.1372 2.0322 11 6 -0.2513 -4.5560 3.3102 12 6 -0.7568 -5.9925 3.1615 13 6 -2.1471 -6.0921 2.5120 14 6 -2.4561 -7.2032 3.5293 15 6 -1.4005 -6.5545 4.4400 16 6 2.0413 -0.7235 1.2498 17 1 3.1275 -0.6455 1.2985 18 6 1.4223 -0.0910 2.4979 19 6 1.7908 1.3929 2.5537 20 7 1.3021 1.9705 3.8082 21 6 1.5160 3.2952 4.0812 22 1 2.0453 3.9141 3.3720 23 6 1.0526 3.8426 5.2697 24 7 0.4079 3.0882 6.1344 25 14 1.3450 5.6495 5.6425 26 1 2.0894 6.2726 4.5186 27 1 0.0400 6.3370 5.8141 28 1 2.1387 5.7751 6.8913 29 1 -0.3632 0.5129 0.8906 30 1 -0.3633 0.5149 -0.8894 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6994 -0.1961 -2.1389 33 1 3.1312 -0.7442 -1.2347 34 1 0.4144 -2.1361 -1.2541 35 1 1.8497 -2.6630 -2.1667 36 1 3.1046 -3.0017 -0.0813 37 1 1.5651 -3.8948 0.0179 38 1 1.3235 -4.8036 1.8617 39 1 -0.2072 -4.1958 1.1866 40 1 0.4343 -4.4974 4.1556 41 1 -1.0968 -3.8896 3.4812 42 1 -0.0168 -6.6576 2.7165 43 1 -2.7559 -5.1977 2.6439 44 1 -2.1227 -6.4401 1.4793 45 1 -2.1817 -8.2000 3.1840 46 1 -3.4679 -7.1573 3.9321 47 1 -0.7732 -7.2758 4.9639 48 1 -1.8051 -5.7864 5.0992 49 1 0.3380 -0.1949 2.4581 50 1 1.8032 -0.5937 3.3869 51 1 2.8742 1.5005 2.5019 52 1 1.3333 1.9128 1.7120 53 1 0.8264 1.4147 4.4452 54 1 0.0837 3.4708 6.9647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691295981.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:03 Heat of formation + Delta-G solvation = -32.544173 kcal Electronic energy + Delta-G solvation = -28782.078881 eV Core-core repulsion = 25139.532166 eV Total energy + Delta-G solvation = -3642.546715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.80250 -39.83275 -38.74193 -37.00789 -35.07672 -34.10118 -33.46575 -32.47628 -29.89895 -28.13762 -27.30427 -26.44399 -26.05316 -25.07811 -23.97493 -22.85471 -22.05572 -20.77545 -20.25879 -19.35693 -19.10995 -17.70638 -17.17543 -16.80140 -16.61489 -16.25802 -16.07190 -15.72183 -15.50907 -15.31613 -15.02552 -14.92298 -14.58286 -14.54549 -14.16090 -13.78723 -13.59068 -13.51947 -13.29288 -13.11911 -12.95785 -12.91989 -12.83038 -12.54059 -12.40054 -12.33258 -12.17519 -12.07581 -11.87963 -11.86239 -11.74882 -11.69254 -11.38765 -11.31490 -11.20390 -11.00996 -10.94892 -10.93789 -9.89846 -9.44337 -9.03375 -7.96709 -5.27645 1.42762 1.46009 1.56157 1.76422 2.07802 2.53710 3.35418 3.49146 3.69456 3.78986 3.80990 3.81421 3.91762 4.00444 4.02593 4.07389 4.14601 4.25154 4.26418 4.37082 4.42510 4.49509 4.58751 4.61208 4.67166 4.69239 4.74776 4.78348 4.82776 4.83964 4.89224 4.92450 4.93418 4.96026 5.00038 5.05718 5.11786 5.13612 5.20221 5.22462 5.26523 5.33613 5.35178 5.41740 5.42992 5.45976 5.54250 5.57784 5.70957 5.80159 6.24358 6.58616 7.28558 7.37790 8.05729 8.30405 9.27705 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.010536 B = 0.003264 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.935836 B = 8576.390230 C =10730.140125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 H 0.072 0.928 4 C -0.110 4.110 5 C -0.132 4.132 6 C 0.101 3.899 7 N -0.607 5.607 8 C 0.494 3.506 9 O -0.576 6.576 10 C -0.125 4.125 11 C -0.093 4.093 12 C -0.102 4.102 13 C -0.137 4.137 14 C -0.139 4.139 15 C -0.149 4.149 16 C 0.161 3.839 17 H 0.071 0.929 18 C -0.093 4.093 19 C 0.150 3.850 20 N -0.748 5.748 21 C -0.247 4.247 22 H 0.078 0.922 23 C -0.082 4.082 24 N -0.973 5.973 25 Si 0.982 3.018 26 H -0.263 1.263 27 H -0.290 1.290 28 H -0.291 1.291 29 H 0.025 0.975 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.047 0.953 41 H 0.042 0.958 42 H 0.110 0.890 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.049 0.951 50 H 0.058 0.942 51 H 0.014 0.986 52 H 0.023 0.977 53 H 0.369 0.631 54 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.730 -24.198 -19.808 31.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.121 4.121 3 H 0.090 0.910 4 C -0.147 4.147 5 C -0.170 4.170 6 C -0.021 4.021 7 N -0.340 5.340 8 C 0.285 3.715 9 O -0.456 6.456 10 C -0.164 4.164 11 C -0.131 4.131 12 C -0.121 4.121 13 C -0.175 4.175 14 C -0.176 4.176 15 C -0.186 4.186 16 C 0.057 3.943 17 H 0.089 0.911 18 C -0.131 4.131 19 C 0.023 3.977 20 N -0.390 5.390 21 C -0.379 4.379 22 H 0.096 0.904 23 C -0.274 4.274 24 N -0.624 5.624 25 Si 0.810 3.190 26 H -0.187 1.187 27 H -0.217 1.217 28 H -0.218 1.218 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.130 0.870 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.129 0.871 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.112 0.888 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.082 0.918 49 H 0.067 0.933 50 H 0.077 0.923 51 H 0.032 0.968 52 H 0.040 0.960 53 H 0.200 0.800 54 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.704 -23.721 -19.351 30.621 hybrid contribution -0.248 1.325 1.312 1.881 sum 0.456 -22.395 -18.040 28.761 Atomic orbital electron populations 1.21801 0.95492 1.01564 1.00780 1.21521 0.96189 0.99531 0.94858 0.90991 1.21542 1.00936 0.96128 0.96128 1.22041 1.01423 0.95339 0.98207 1.22189 1.01392 0.95715 0.82767 1.48272 1.55989 1.10393 1.19344 1.21580 0.77286 0.90171 0.82504 1.90844 1.58357 1.65640 1.30754 1.21726 1.02549 0.91335 1.00804 1.21268 0.99250 0.96018 0.96547 1.22580 0.96965 0.95065 0.97446 1.22977 0.96230 0.98791 0.99481 1.22821 0.98846 0.98779 0.97186 1.22985 0.98846 1.00062 0.96721 1.21084 0.98057 0.80695 0.94474 0.91116 1.21931 1.00246 0.92963 0.97924 1.20963 0.95558 0.93476 0.87730 1.42653 1.68161 1.08307 1.19913 1.19735 1.29076 0.87317 1.01739 0.90435 1.25730 1.01558 1.02995 0.97117 1.69888 1.44871 1.36804 1.10864 0.84955 0.77104 0.79197 0.77777 1.18667 1.21750 1.21801 0.95558 0.91656 0.92193 0.90618 0.90984 0.91523 0.87962 0.90022 0.87022 0.86287 0.86813 0.93455 0.93904 0.87146 0.91488 0.89936 0.88777 0.91847 0.91047 0.91784 0.93265 0.92330 0.96841 0.95964 0.80008 0.93999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 8.19 71.98 0.59 -3.06 16 2 C -0.10 -2.45 2.25 -10.71 -0.02 -2.48 16 3 H 0.07 1.93 6.86 -2.39 -0.02 1.92 16 4 C -0.11 -1.68 5.43 30.62 0.17 -1.51 16 5 C -0.13 -1.45 5.76 30.82 0.18 -1.27 16 6 C 0.10 1.23 6.38 86.51 0.55 1.78 16 7 N -0.61 -13.93 2.41 -794.16 -1.91 -15.84 16 8 C 0.49 13.61 7.53 87.66 0.66 14.27 16 9 O -0.58 -22.94 11.53 -3.03 -0.03 -22.97 16 10 C -0.12 -2.14 4.05 29.85 0.12 -2.02 16 11 C -0.09 -1.99 4.34 30.59 0.13 -1.86 16 12 C -0.10 -1.53 3.65 -10.27 -0.04 -1.57 16 13 C -0.14 -1.90 7.63 31.12 0.24 -1.67 16 14 C -0.14 -1.84 8.08 31.12 0.25 -1.59 16 15 C -0.15 -2.45 7.64 31.12 0.24 -2.21 16 16 C 0.16 4.63 2.73 44.97 0.12 4.75 16 17 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 18 C -0.09 -3.78 2.76 30.59 0.08 -3.69 16 19 C 0.15 6.94 5.69 86.38 0.49 7.43 16 20 N -0.75 -43.93 5.60 -343.45 -1.92 -45.85 16 21 C -0.25 -15.17 9.99 84.03 0.84 -14.33 16 22 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 23 C -0.08 -5.12 5.50 84.86 0.47 -4.66 16 24 N -0.97 -64.89 13.06 21.65 0.28 -64.61 16 25 Si 0.98 49.09 29.55 68.60 2.03 51.12 16 26 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 27 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 28 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 29 H 0.03 0.89 6.15 -2.39 -0.01 0.87 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.45 5.97 -2.39 -0.01 1.43 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 0.84 6.34 -2.38 -0.02 0.82 16 35 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.11 0.76 5.93 -2.39 -0.01 0.74 16 38 H 0.12 1.31 7.71 -2.39 -0.02 1.29 16 39 H 0.11 1.41 7.92 -2.39 -0.02 1.39 16 40 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 41 H 0.04 1.15 7.80 -2.39 -0.02 1.14 16 42 H 0.11 1.19 8.13 -2.39 -0.02 1.17 16 43 H 0.07 1.13 7.89 -2.39 -0.02 1.11 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 48 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 49 H 0.05 2.21 5.52 -2.39 -0.01 2.20 16 50 H 0.06 2.78 6.24 -2.39 -0.01 2.77 16 51 H 0.01 0.62 8.14 -2.39 -0.02 0.61 16 52 H 0.02 1.01 6.63 -2.39 -0.02 1.00 16 53 H 0.37 23.63 7.67 -92.71 -0.71 22.92 16 54 H 0.25 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -80.29 399.74 3.66 -76.63 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: 0.15 Total: 35.20 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 5.07 Total: -13.68 kcal Atomic # 7 Polarization: -122.75 SS G_CDS: -3.55 Total: -126.30 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.03 Total: -22.97 kcal Atomic # 14 Polarization: 49.09 SS G_CDS: 2.03 Total: 51.12 kcal Total: -80.29 3.66 -76.63 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691295981.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.085 kcal (2) G-P(sol) polarization free energy of solvation -80.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds