Wall clock time and date at job start Tue Mar 31 2020 15:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.50254 * 2 1 4 4 C 1.53041 * 109.49666 * 239.93761 * 2 1 3 5 5 C 1.53038 * 109.53850 * 301.41439 * 4 2 1 6 6 C 1.53193 * 109.31311 * 298.63684 * 5 4 2 7 7 N 1.46922 * 108.77511 * 54.63102 * 6 5 4 8 8 C 1.34783 * 120.62715 * 126.41893 * 7 6 5 9 9 O 1.21285 * 119.99668 * 174.61928 * 8 7 6 10 10 C 1.50694 * 120.00008 * 354.61384 * 8 7 6 11 11 H 1.09002 * 115.55110 * 34.28856 * 10 8 7 12 12 C 1.52995 * 117.50238 * 248.60915 * 10 8 7 13 13 C 1.52992 * 60.00354 * 252.51273 * 12 10 8 14 14 C 1.53001 * 117.50186 * 252.50921 * 13 12 10 15 15 C 1.53003 * 117.50288 * 107.48823 * 13 12 10 16 16 C 1.46927 * 118.74172 * 306.38870 * 7 6 5 17 17 H 1.08998 * 109.58962 * 293.82776 * 16 7 6 18 18 C 1.52994 * 109.58643 * 173.39585 * 16 7 6 19 19 C 1.52995 * 109.47297 * 182.23103 * 18 16 7 20 20 C 1.53002 * 109.47358 * 185.08290 * 19 18 16 21 21 N 1.46508 * 109.47042 * 179.97438 * 20 19 18 22 22 C 1.36934 * 119.99651 * 180.02562 * 21 20 19 23 23 H 1.07994 * 120.00158 * 359.97438 * 22 21 20 24 24 C 1.38817 * 119.99690 * 180.02562 * 22 21 20 25 25 N 1.31621 * 119.99999 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00011 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47096 * 89.99598 * 26 24 22 28 28 H 1.48500 * 109.47182 * 209.99915 * 26 24 22 29 29 H 1.48503 * 109.47114 * 329.99486 * 26 24 22 30 30 H 1.08998 * 109.47336 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47143 * 300.06222 * 1 2 3 32 32 H 1.09000 * 109.47081 * 60.05858 * 1 2 3 33 33 H 1.09001 * 109.46152 * 61.43071 * 4 2 1 34 34 H 1.09005 * 109.46325 * 181.41002 * 4 2 1 35 35 H 1.09005 * 109.49896 * 58.58644 * 5 4 2 36 36 H 1.09004 * 109.50142 * 178.64977 * 5 4 2 37 37 H 1.09000 * 109.59018 * 174.42275 * 6 5 4 38 38 H 1.09008 * 109.58430 * 294.70363 * 6 5 4 39 39 H 1.09001 * 117.49809 * 0.02562 * 12 10 8 40 40 H 1.09000 * 117.50312 * 144.99758 * 12 10 8 41 41 H 1.09002 * 109.47523 * 128.61931 * 14 13 12 42 42 H 1.08997 * 109.47260 * 248.62332 * 14 13 12 43 43 H 1.09004 * 109.47047 * 8.61882 * 14 13 12 44 44 H 1.09007 * 109.46510 * 351.37679 * 15 13 12 45 45 H 1.08993 * 109.47364 * 111.37629 * 15 13 12 46 46 H 1.08998 * 109.47068 * 231.38103 * 15 13 12 47 47 H 1.09001 * 109.47625 * 302.23199 * 18 16 7 48 48 H 1.09000 * 109.47150 * 62.22792 * 18 16 7 49 49 H 1.09003 * 109.47157 * 305.08227 * 19 18 16 50 50 H 1.08999 * 109.47109 * 65.07931 * 19 18 16 51 51 H 1.08992 * 109.47150 * 299.99622 * 20 19 18 52 52 H 1.09003 * 109.47034 * 60.00185 * 20 19 18 53 53 H 0.96999 * 119.99614 * 0.02562 * 21 20 19 54 54 H 0.97003 * 120.00094 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0407 -0.7227 -1.2486 5 6 1.5029 -2.1553 -1.2667 6 6 2.0138 -2.9040 -0.0317 7 7 1.6515 -2.1385 1.1688 8 6 0.9747 -2.7228 2.1774 9 8 0.7665 -2.1099 3.2031 10 6 0.4766 -4.1374 2.0306 11 1 1.1137 -4.8020 1.4469 12 6 -1.0360 -4.3479 1.9386 13 6 -0.2845 -4.7445 3.2109 14 6 -0.0932 -6.2381 3.4820 15 6 -0.4817 -3.8688 4.4499 16 6 2.0414 -0.7242 1.2494 17 1 3.1275 -0.6467 1.2977 18 6 1.4230 -0.0920 2.4978 19 6 1.7846 1.3937 2.5496 20 6 1.2746 1.9974 3.8597 21 7 1.6215 3.4200 3.9095 22 6 1.2655 4.1738 4.9959 23 1 0.7287 3.7198 5.8156 24 6 1.5937 5.5218 5.0428 25 7 2.2475 6.0752 4.0435 26 14 1.1075 6.5504 6.5244 27 1 2.1936 6.5055 7.5361 28 1 0.8844 7.9557 6.0996 29 1 -0.1422 6.0076 7.1152 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5148 0.8895 32 1 -0.3633 0.5129 -0.8905 33 1 1.6986 -0.1952 -2.1390 34 1 3.1305 -0.7443 -1.2355 35 1 0.4131 -2.1351 -1.2548 36 1 1.8474 -2.6620 -2.1683 37 1 1.5553 -3.8918 0.0125 38 1 3.0976 -3.0065 -0.0890 39 1 -1.6709 -3.4631 1.9838 40 1 -1.3942 -5.1508 1.2943 41 1 0.9590 -6.4389 3.6838 42 1 -0.6910 -6.5302 4.3453 43 1 -0.4112 -6.8093 2.6098 44 1 -1.0402 -2.9734 4.1768 45 1 -1.0359 -4.4266 5.2047 46 1 0.4905 -3.5823 4.8508 47 1 0.3390 -0.2010 2.4614 48 1 1.8086 -0.5910 3.3868 49 1 2.8674 1.5062 2.4950 50 1 1.3229 1.9096 1.7078 51 1 0.1919 1.8850 3.9143 52 1 1.7364 1.4815 4.7016 53 1 2.1033 3.8277 3.1730 54 1 2.4772 7.0170 4.0764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691394714.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:31 Heat of formation + Delta-G solvation = -20.441486 kcal Electronic energy + Delta-G solvation = -29094.586110 eV Core-core repulsion = 25452.564207 eV Total energy + Delta-G solvation = -3642.021903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.97308 -39.75710 -37.75641 -37.29071 -35.33064 -34.31267 -33.12134 -31.02713 -30.43358 -28.48023 -28.29460 -27.23872 -26.10722 -24.71863 -24.55348 -22.89595 -21.95883 -21.15579 -19.84825 -19.17449 -19.11682 -18.03615 -17.01577 -16.75664 -16.43075 -16.07716 -15.81439 -15.45797 -15.37723 -15.17730 -15.00758 -14.84770 -14.70936 -14.52612 -14.02157 -13.99604 -13.64415 -13.42400 -13.37219 -13.18986 -12.93010 -12.88055 -12.78229 -12.72562 -12.63561 -12.41782 -12.21577 -12.10528 -12.06237 -11.95429 -11.85576 -11.71900 -11.58171 -11.29271 -11.15689 -11.09971 -10.96794 -10.59579 -9.78213 -9.44506 -9.06233 -7.99528 -5.29567 1.43289 1.46465 1.55223 1.59442 2.00469 2.52801 2.84142 3.32980 3.44041 3.68349 3.79306 3.80311 3.86778 3.93146 3.97158 4.11326 4.12650 4.19652 4.22448 4.24534 4.29963 4.50805 4.58745 4.61602 4.68019 4.70444 4.71458 4.80372 4.83908 4.85140 4.88916 4.91009 4.96757 5.01704 5.05076 5.08240 5.10249 5.11832 5.14473 5.14673 5.24650 5.25826 5.31218 5.34447 5.42503 5.44839 5.51017 5.54386 5.57308 5.79458 6.22975 6.56445 7.28413 7.35580 8.02701 8.29505 9.24241 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013712 B = 0.003041 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.531300 B = 9206.057138 C =10822.091399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 H 0.072 0.928 4 C -0.113 4.113 5 C -0.131 4.131 6 C 0.102 3.898 7 N -0.602 5.602 8 C 0.529 3.471 9 O -0.559 6.559 10 C -0.189 4.189 11 H 0.149 0.851 12 C -0.134 4.134 13 C -0.104 4.104 14 C -0.110 4.110 15 C -0.099 4.099 16 C 0.158 3.842 17 H 0.069 0.931 18 C -0.085 4.085 19 C -0.115 4.115 20 C 0.159 3.841 21 N -0.746 5.746 22 C -0.253 4.253 23 H 0.070 0.930 24 C -0.075 4.075 25 N -0.969 5.969 26 Si 0.979 3.021 27 H -0.284 1.284 28 H -0.289 1.289 29 H -0.271 1.271 30 H 0.059 0.941 31 H 0.034 0.966 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.132 0.868 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.040 0.960 45 H 0.058 0.942 46 H 0.044 0.956 47 H 0.056 0.944 48 H 0.068 0.932 49 H 0.056 0.944 50 H 0.060 0.940 51 H 0.008 0.992 52 H 0.008 0.992 53 H 0.375 0.625 54 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.929 -29.806 -14.548 33.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.123 4.123 3 H 0.090 0.910 4 C -0.150 4.150 5 C -0.169 4.169 6 C -0.020 4.020 7 N -0.335 5.335 8 C 0.319 3.681 9 O -0.438 6.438 10 C -0.209 4.209 11 H 0.166 0.834 12 C -0.171 4.171 13 C -0.105 4.105 14 C -0.167 4.167 15 C -0.157 4.157 16 C 0.054 3.946 17 H 0.087 0.913 18 C -0.123 4.123 19 C -0.153 4.153 20 C 0.032 3.968 21 N -0.389 5.389 22 C -0.385 4.385 23 H 0.088 0.912 24 C -0.267 4.267 25 N -0.620 5.620 26 Si 0.807 3.193 27 H -0.211 1.211 28 H -0.215 1.215 29 H -0.196 1.196 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.150 0.850 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.059 0.941 45 H 0.077 0.923 46 H 0.063 0.937 47 H 0.075 0.925 48 H 0.086 0.914 49 H 0.075 0.925 50 H 0.079 0.921 51 H 0.026 0.974 52 H 0.026 0.974 53 H 0.206 0.794 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.116 -29.474 -13.856 32.717 hybrid contribution 0.123 1.526 0.721 1.692 sum -2.994 -27.948 -13.135 31.025 Atomic orbital electron populations 1.21807 0.95260 1.01616 1.01015 1.21523 0.96363 0.99507 0.94871 0.90969 1.21551 1.00829 0.96145 0.96482 1.21940 1.01438 0.95344 0.98146 1.22044 1.01147 0.95758 0.83038 1.48160 1.55902 1.10535 1.18871 1.20277 0.77203 0.88058 0.82558 1.90795 1.58164 1.65029 1.29856 1.22489 0.97612 0.94316 1.06513 0.83384 1.23232 0.90302 1.03478 1.00092 1.21646 1.02171 0.96877 0.89813 1.21380 1.02274 0.90117 1.02947 1.21246 1.00951 0.97635 0.95824 1.21183 0.98152 0.80227 0.94994 0.91267 1.21812 1.00650 0.92075 0.97753 1.21747 1.00394 0.96740 0.96459 1.20668 0.96021 0.83827 0.96277 1.42598 1.68757 1.05852 1.21689 1.19646 1.29387 0.91924 0.97556 0.91216 1.25639 1.01691 0.98037 1.01346 1.69824 1.46491 1.12102 1.33544 0.85071 0.78078 0.77664 0.78533 1.21064 1.21511 1.19596 0.92208 0.94689 0.92090 0.90936 0.91251 0.91516 0.88343 0.87454 0.90379 0.90201 0.84975 0.91966 0.91517 0.90314 0.94089 0.92325 0.93730 0.92489 0.91350 0.92542 0.92113 0.97438 0.97415 0.79351 0.93756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.16 71.98 0.59 -2.62 16 2 C -0.10 -2.24 2.24 -10.72 -0.02 -2.26 16 3 H 0.07 1.78 6.86 -2.39 -0.02 1.76 16 4 C -0.11 -1.65 5.43 30.62 0.17 -1.49 16 5 C -0.13 -1.38 5.74 30.67 0.18 -1.20 16 6 C 0.10 1.17 6.34 86.36 0.55 1.72 16 7 N -0.60 -12.13 2.41 -795.02 -1.92 -14.05 16 8 C 0.53 12.54 7.30 87.65 0.64 13.18 16 9 O -0.56 -18.02 8.65 -3.04 -0.03 -18.05 16 10 C -0.19 -2.99 4.84 -11.54 -0.06 -3.04 16 11 H 0.15 1.44 6.59 -2.39 -0.02 1.42 16 12 C -0.13 -1.88 9.52 30.59 0.29 -1.59 16 13 C -0.10 -1.75 2.70 -52.18 -0.14 -1.89 16 14 C -0.11 -1.21 9.85 71.98 0.71 -0.50 16 15 C -0.10 -2.33 8.09 71.98 0.58 -1.74 16 16 C 0.16 3.89 2.74 44.97 0.12 4.01 16 17 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 18 C -0.08 -2.78 2.64 30.59 0.08 -2.70 16 19 C -0.12 -4.34 4.74 30.59 0.14 -4.19 16 20 C 0.16 7.55 6.26 86.38 0.54 8.09 16 21 N -0.75 -42.52 5.60 -343.44 -1.92 -44.45 16 22 C -0.25 -15.53 9.99 84.04 0.84 -14.69 16 23 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 24 C -0.07 -4.58 5.50 84.86 0.47 -4.11 16 25 N -0.97 -62.11 13.06 21.65 0.28 -61.83 16 26 Si 0.98 48.59 29.55 68.60 2.03 50.62 16 27 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 28 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 29 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 30 H 0.06 1.27 5.97 -2.39 -0.01 1.26 16 31 H 0.03 0.99 6.13 -2.38 -0.01 0.98 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.07 0.81 6.34 -2.38 -0.02 0.79 16 36 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.11 0.76 5.53 -2.39 -0.01 0.74 16 38 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.08 1.46 8.05 -2.39 -0.02 1.44 16 40 H 0.13 1.04 8.05 -2.39 -0.02 1.02 16 41 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.07 0.72 7.92 -2.39 -0.02 0.70 16 43 H 0.08 0.54 7.90 -2.38 -0.02 0.52 16 44 H 0.04 1.14 7.01 -2.38 -0.02 1.13 16 45 H 0.06 1.17 7.92 -2.39 -0.02 1.15 16 46 H 0.04 1.24 7.26 -2.39 -0.02 1.22 16 47 H 0.06 2.03 5.52 -2.39 -0.01 2.02 16 48 H 0.07 2.57 6.27 -2.39 -0.01 2.55 16 49 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 50 H 0.06 2.26 6.57 -2.39 -0.02 2.24 16 51 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 52 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 53 H 0.37 22.10 7.67 -92.71 -0.71 21.39 16 54 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -74.75 397.80 4.28 -70.47 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: 0.16 Total: 32.31 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 5.67 Total: -15.03 kcal Atomic # 7 Polarization: -116.77 SS G_CDS: -3.56 Total: -120.32 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.03 Total: -18.05 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.62 kcal Total: -74.75 4.28 -70.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691394714.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.028 kcal (2) G-P(sol) polarization free energy of solvation -74.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds