Wall clock time and date at job start Tue Mar 31 2020 15:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.52700 * 2 1 4 4 C 1.53045 * 109.49423 * 239.92522 * 2 1 3 5 5 C 1.53034 * 109.53696 * 301.41102 * 4 2 1 6 6 C 1.53631 * 109.24470 * 298.51466 * 5 4 2 7 7 N 1.46921 * 108.54110 * 54.85716 * 6 5 4 8 8 C 1.34776 * 120.63141 * 126.37103 * 7 6 5 9 9 O 1.21285 * 120.00104 * 174.28014 * 8 7 6 10 10 C 1.50699 * 119.99742 * 354.28874 * 8 7 6 11 11 H 1.09000 * 115.56258 * 325.69490 * 10 8 7 12 12 C 1.52996 * 117.50095 * 111.39503 * 10 8 7 13 13 C 1.52999 * 60.00172 * 107.48337 * 12 10 8 14 14 C 1.52999 * 117.49712 * 252.50457 * 13 12 10 15 15 C 1.53002 * 117.49564 * 107.48896 * 13 12 10 16 16 C 1.46927 * 118.73741 * 306.08983 * 7 6 5 17 17 H 1.08997 * 109.59111 * 293.93320 * 16 7 6 18 18 C 1.53005 * 109.58707 * 173.64776 * 16 7 6 19 19 C 1.52993 * 109.47283 * 181.85978 * 18 16 7 20 20 C 1.52999 * 109.47286 * 185.10428 * 19 18 16 21 21 N 1.46501 * 109.47118 * 180.02562 * 20 19 18 22 22 C 1.36938 * 119.99640 * 180.02562 * 21 20 19 23 23 H 1.08002 * 120.00432 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99767 * 179.97438 * 22 21 20 25 25 N 1.31618 * 119.99888 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00078 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47146 * 59.99485 * 26 24 22 28 28 H 1.48496 * 109.47279 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.46993 * 299.99922 * 26 24 22 30 30 H 1.09003 * 109.47047 * 299.91787 * 1 2 3 31 31 H 1.08998 * 109.47284 * 59.91125 * 1 2 3 32 32 H 1.08999 * 109.47168 * 179.91255 * 1 2 3 33 33 H 1.08995 * 109.46281 * 61.43384 * 4 2 1 34 34 H 1.09004 * 109.45442 * 181.39520 * 4 2 1 35 35 H 1.08995 * 109.50132 * 58.59068 * 5 4 2 36 36 H 1.09003 * 109.49947 * 178.68569 * 5 4 2 37 37 H 1.09002 * 109.73592 * 295.12063 * 6 5 4 38 38 H 1.09002 * 109.66441 * 174.55158 * 6 5 4 39 39 H 1.09001 * 117.49487 * 214.97495 * 12 10 8 40 40 H 1.08994 * 117.49941 * 359.96501 * 12 10 8 41 41 H 1.09004 * 109.46866 * 128.62578 * 14 13 12 42 42 H 1.08994 * 109.47112 * 248.62080 * 14 13 12 43 43 H 1.08996 * 109.47123 * 8.62614 * 14 13 12 44 44 H 1.08995 * 109.47654 * 351.37457 * 15 13 12 45 45 H 1.09001 * 109.47167 * 111.38085 * 15 13 12 46 46 H 1.09003 * 109.47007 * 231.37457 * 15 13 12 47 47 H 1.08991 * 109.47105 * 301.86650 * 18 16 7 48 48 H 1.09005 * 109.46449 * 61.85912 * 18 16 7 49 49 H 1.09001 * 109.47274 * 305.10194 * 19 18 16 50 50 H 1.08995 * 109.47365 * 65.10266 * 19 18 16 51 51 H 1.09001 * 109.46773 * 300.00073 * 20 19 18 52 52 H 1.08998 * 109.47381 * 60.00054 * 20 19 18 53 53 H 0.96995 * 120.00520 * 359.97438 * 21 20 19 54 54 H 0.97004 * 119.99742 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0407 -0.7230 -1.2485 5 6 1.5029 -2.1556 -1.2662 6 6 2.0188 -2.9055 -0.0286 7 7 1.6514 -2.1383 1.1693 8 6 0.9747 -2.7222 2.1780 9 8 0.7678 -2.1096 3.2041 10 6 0.4753 -4.1364 2.0310 11 1 0.1585 -4.4214 1.0277 12 6 1.1353 -5.2122 2.8957 13 6 -0.2864 -4.7429 3.2112 14 6 -0.4825 -3.8673 4.4505 15 6 -1.4342 -5.7031 2.8929 16 6 2.0413 -0.7239 1.2495 17 1 3.1273 -0.6465 1.3005 18 6 1.4229 -0.0913 2.4978 19 6 1.7922 1.3923 2.5541 20 6 1.2823 1.9955 3.8644 21 7 1.6355 3.4163 3.9180 22 6 1.2807 4.1694 5.0052 23 1 0.7402 3.7161 5.8231 24 6 1.6158 5.5155 5.0562 25 7 2.2749 6.0678 4.0598 26 14 1.1325 6.5428 6.5397 27 1 1.7545 5.9716 7.7612 28 1 1.6043 7.9381 6.3506 29 1 -0.3452 6.5351 6.6869 30 1 -0.3633 0.5126 0.8907 31 1 -0.3634 0.5152 -0.8892 32 1 -0.3633 -1.0277 -0.0016 33 1 1.6986 -0.1957 -2.1390 34 1 3.1304 -0.7443 -1.2354 35 1 0.4132 -2.1354 -1.2543 36 1 1.8479 -2.6626 -2.1674 37 1 3.1032 -3.0022 -0.0823 38 1 1.5634 -3.8948 0.0172 39 1 1.2528 -6.2050 2.4613 40 1 1.9311 -4.8973 3.5706 41 1 -1.0402 -2.9714 4.1777 42 1 -1.0372 -4.4248 5.2051 43 1 0.4900 -3.5819 4.8514 44 1 -1.0508 -6.5539 2.3297 45 1 -1.8823 -6.0547 3.8223 46 1 -2.1877 -5.1847 2.2997 47 1 0.3386 -0.1946 2.4583 48 1 1.8036 -0.5945 3.3867 49 1 2.8757 1.4992 2.5023 50 1 1.3352 1.9127 1.7125 51 1 0.1988 1.8886 3.9162 52 1 1.7394 1.4752 4.7061 53 1 2.1212 3.8234 3.1837 54 1 2.5094 7.0084 4.0957 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691394715.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:35 Heat of formation + Delta-G solvation = -20.629390 kcal Electronic energy + Delta-G solvation = -29057.719244 eV Core-core repulsion = 25415.689193 eV Total energy + Delta-G solvation = -3642.030051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.96511 -39.76222 -37.74951 -37.28645 -35.32057 -34.31206 -33.11449 -31.01741 -30.42977 -28.48234 -28.30064 -27.22686 -26.11537 -24.69713 -24.52661 -22.93184 -21.94775 -21.12767 -19.86631 -19.20974 -19.16167 -17.85936 -17.13426 -16.73843 -16.43471 -16.29835 -15.51236 -15.40868 -15.36287 -15.19214 -15.01815 -14.94530 -14.71378 -14.45863 -14.22661 -13.78290 -13.66460 -13.44038 -13.35386 -13.18777 -12.93569 -12.90467 -12.76535 -12.75085 -12.61959 -12.40952 -12.24628 -12.12666 -12.06035 -11.94982 -11.86596 -11.71368 -11.56751 -11.30215 -11.19810 -11.06882 -10.95789 -10.58996 -9.78339 -9.44385 -9.06129 -7.99230 -5.29355 1.43242 1.47853 1.54184 1.59515 2.01711 2.53045 2.82957 3.33106 3.43838 3.68284 3.78903 3.80000 3.88639 3.92102 3.97939 4.08484 4.15041 4.20112 4.22253 4.24686 4.29839 4.50697 4.59138 4.62196 4.67926 4.69838 4.70884 4.80758 4.83556 4.85485 4.89110 4.91338 4.96430 5.01707 5.04885 5.08711 5.09878 5.11654 5.14290 5.14487 5.24523 5.25845 5.31123 5.34305 5.42367 5.44944 5.51031 5.54058 5.57189 5.79700 6.23123 6.56554 7.28569 7.35789 8.02954 8.29744 9.24324 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013603 B = 0.003030 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.842856 B = 9239.331924 C =10827.934578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 H 0.072 0.928 4 C -0.112 4.112 5 C -0.132 4.132 6 C 0.103 3.897 7 N -0.602 5.602 8 C 0.529 3.471 9 O -0.559 6.559 10 C -0.189 4.189 11 H 0.147 0.853 12 C -0.133 4.133 13 C -0.105 4.105 14 C -0.099 4.099 15 C -0.111 4.111 16 C 0.158 3.842 17 H 0.069 0.931 18 C -0.086 4.086 19 C -0.115 4.115 20 C 0.159 3.841 21 N -0.746 5.746 22 C -0.255 4.255 23 H 0.070 0.930 24 C -0.074 4.074 25 N -0.969 5.969 26 Si 0.979 3.021 27 H -0.277 1.277 28 H -0.289 1.289 29 H -0.277 1.277 30 H 0.034 0.966 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.133 0.867 40 H 0.082 0.918 41 H 0.042 0.958 42 H 0.058 0.942 43 H 0.042 0.958 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.059 0.941 47 H 0.056 0.944 48 H 0.069 0.931 49 H 0.056 0.944 50 H 0.060 0.940 51 H 0.008 0.992 52 H 0.008 0.992 53 H 0.375 0.625 54 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.617 -29.877 -14.422 33.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.123 4.123 3 H 0.090 0.910 4 C -0.150 4.150 5 C -0.170 4.170 6 C -0.019 4.019 7 N -0.335 5.335 8 C 0.319 3.681 9 O -0.439 6.439 10 C -0.210 4.210 11 H 0.164 0.836 12 C -0.170 4.170 13 C -0.106 4.106 14 C -0.156 4.156 15 C -0.168 4.168 16 C 0.055 3.945 17 H 0.087 0.913 18 C -0.124 4.124 19 C -0.153 4.153 20 C 0.032 3.968 21 N -0.389 5.389 22 C -0.387 4.387 23 H 0.088 0.912 24 C -0.267 4.267 25 N -0.619 5.619 26 Si 0.807 3.193 27 H -0.203 1.203 28 H -0.214 1.214 29 H -0.203 1.203 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.096 0.904 38 H 0.125 0.875 39 H 0.151 0.849 40 H 0.101 0.899 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.087 0.913 49 H 0.075 0.925 50 H 0.079 0.921 51 H 0.026 0.974 52 H 0.026 0.974 53 H 0.206 0.794 54 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.798 -29.537 -13.732 32.693 hybrid contribution 0.071 1.525 0.710 1.683 sum -2.727 -28.013 -13.022 31.012 Atomic orbital electron populations 1.21809 0.95263 1.01603 1.01046 1.21523 0.96345 0.99522 0.94875 0.90956 1.21547 1.00837 0.96125 0.96483 1.22034 1.01389 0.95377 0.98188 1.22121 1.01139 0.95649 0.82945 1.48169 1.55676 1.10497 1.19145 1.20279 0.77143 0.88091 0.82582 1.90793 1.58205 1.64920 1.29945 1.22476 1.08053 0.91173 0.99272 0.83589 1.23257 0.95051 0.98054 1.00618 1.21646 0.94577 0.99637 0.94737 1.21244 1.01187 0.97816 0.95396 1.21380 0.95642 0.97420 1.02315 1.21186 0.98143 0.80227 0.94994 0.91269 1.21828 1.00638 0.92109 0.97804 1.21742 1.00374 0.96757 0.96452 1.20667 0.96006 0.83860 0.96262 1.42587 1.68454 1.06038 1.21811 1.19617 1.29338 0.92081 0.97660 0.91221 1.25638 1.01593 0.98047 1.01380 1.69818 1.46119 1.12256 1.33745 0.85143 0.78025 0.77419 0.78761 1.20333 1.21438 1.20295 0.94667 0.92060 0.92252 0.90928 0.91246 0.91490 0.88346 0.90365 0.87461 0.84913 0.89900 0.93933 0.92338 0.93884 0.90253 0.91493 0.92172 0.92499 0.91275 0.92545 0.92128 0.97441 0.97426 0.79352 0.93743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.19 71.98 0.59 -2.64 16 2 C -0.10 -2.24 2.25 -10.72 -0.02 -2.26 16 3 H 0.07 1.78 6.86 -2.38 -0.02 1.77 16 4 C -0.11 -1.65 5.43 30.62 0.17 -1.48 16 5 C -0.13 -1.38 5.75 30.82 0.18 -1.21 16 6 C 0.10 1.19 6.38 86.51 0.55 1.74 16 7 N -0.60 -12.15 2.40 -794.18 -1.91 -14.06 16 8 C 0.53 12.55 7.30 87.66 0.64 13.19 16 9 O -0.56 -18.03 8.66 -3.04 -0.03 -18.06 16 10 C -0.19 -3.00 4.70 -11.54 -0.05 -3.05 16 11 H 0.15 1.49 6.82 -2.39 -0.02 1.48 16 12 C -0.13 -1.79 9.52 30.59 0.29 -1.50 16 13 C -0.11 -1.76 2.70 -52.18 -0.14 -1.91 16 14 C -0.10 -2.32 8.09 71.98 0.58 -1.74 16 15 C -0.11 -1.25 9.85 71.98 0.71 -0.54 16 16 C 0.16 3.90 2.74 44.98 0.12 4.02 16 17 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 18 C -0.09 -2.82 2.64 30.59 0.08 -2.74 16 19 C -0.11 -4.34 4.76 30.59 0.15 -4.19 16 20 C 0.16 7.57 6.26 86.38 0.54 8.11 16 21 N -0.75 -42.57 5.60 -343.45 -1.92 -44.49 16 22 C -0.26 -15.66 9.99 84.03 0.84 -14.82 16 23 H 0.07 4.16 7.83 -2.91 -0.02 4.13 16 24 C -0.07 -4.54 5.50 84.86 0.47 -4.07 16 25 N -0.97 -62.11 13.06 21.65 0.28 -61.83 16 26 Si 0.98 48.57 29.55 68.60 2.03 50.60 16 27 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 28 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 29 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 30 H 0.03 1.01 6.16 -2.39 -0.01 0.99 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.27 5.97 -2.39 -0.01 1.26 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 0.80 6.33 -2.39 -0.02 0.78 16 36 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.11 0.77 5.62 -2.39 -0.01 0.76 16 39 H 0.13 0.96 8.05 -2.39 -0.02 0.94 16 40 H 0.08 1.41 8.05 -2.39 -0.02 1.40 16 41 H 0.04 1.21 7.26 -2.39 -0.02 1.19 16 42 H 0.06 1.17 7.92 -2.39 -0.02 1.15 16 43 H 0.04 1.18 7.01 -2.39 -0.02 1.16 16 44 H 0.08 0.56 7.90 -2.39 -0.02 0.54 16 45 H 0.07 0.74 7.92 -2.39 -0.02 0.72 16 46 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.06 2.04 5.52 -2.39 -0.01 2.02 16 48 H 0.07 2.60 6.24 -2.38 -0.01 2.58 16 49 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 50 H 0.06 2.26 6.64 -2.39 -0.02 2.24 16 51 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 52 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 53 H 0.37 22.12 7.67 -92.71 -0.71 21.41 16 54 H 0.25 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -74.71 398.15 4.29 -70.41 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: 0.16 Total: 32.52 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: 5.68 Total: -15.10 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -3.55 Total: -120.38 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.03 Total: -18.06 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.60 kcal Total: -74.71 4.29 -70.41 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691394715.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.783 kcal (2) G-P(sol) polarization free energy of solvation -74.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds