Wall clock time and date at job start Tue Mar 31 2020 15:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.49368 * 2 1 4 4 C 1.53037 * 109.49920 * 120.09690 * 2 1 3 5 5 C 1.53033 * 109.53863 * 181.31762 * 4 2 1 6 6 C 1.53193 * 109.31565 * 298.63400 * 5 4 2 7 7 N 1.46926 * 108.77084 * 54.63409 * 6 5 4 8 8 C 1.34771 * 120.62868 * 126.37749 * 7 6 5 9 9 O 1.21284 * 119.99944 * 183.09003 * 8 7 6 10 10 C 1.50707 * 120.00290 * 3.08440 * 8 7 6 11 11 C 1.52993 * 109.47201 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46847 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.47223 * 179.97438 * 12 11 10 14 14 C 1.53001 * 117.50080 * 243.75006 * 13 12 11 15 15 C 1.52995 * 117.50157 * 175.08764 * 13 12 11 16 16 C 1.46926 * 118.74066 * 306.39146 * 7 6 5 17 17 H 1.09004 * 109.70205 * 293.75225 * 16 7 6 18 18 C 1.53005 * 109.58579 * 173.40007 * 16 7 6 19 19 C 1.52999 * 109.46878 * 292.17690 * 18 16 7 20 20 N 1.46503 * 109.46890 * 173.61387 * 19 18 16 21 21 C 1.36930 * 119.99772 * 179.97438 * 20 19 18 22 22 H 1.08004 * 120.00418 * 359.97438 * 21 20 19 23 23 C 1.38820 * 120.00134 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99693 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00418 * 180.27296 * 23 21 20 26 26 H 1.48496 * 109.47320 * 179.72257 * 25 23 21 27 27 H 1.48497 * 109.47193 * 299.73190 * 25 23 21 28 28 H 1.48507 * 109.46634 * 59.72391 * 25 23 21 29 29 H 1.08995 * 109.46821 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46827 * 300.06607 * 1 2 3 31 31 H 1.09000 * 109.47028 * 60.06776 * 1 2 3 32 32 H 1.09003 * 109.45810 * 301.34023 * 4 2 1 33 33 H 1.09000 * 109.46157 * 61.30388 * 4 2 1 34 34 H 1.09008 * 109.49711 * 58.58738 * 5 4 2 35 35 H 1.09001 * 109.49718 * 178.65109 * 5 4 2 36 36 H 1.08992 * 109.58887 * 174.42214 * 6 5 4 37 37 H 1.09002 * 109.58128 * 294.85177 * 6 5 4 38 38 H 1.09004 * 109.46987 * 300.00568 * 10 8 7 39 39 H 1.09000 * 109.46873 * 59.99868 * 10 8 7 40 40 H 1.09004 * 109.47243 * 299.99958 * 11 10 8 41 41 H 1.09000 * 109.47234 * 60.00199 * 11 10 8 42 42 H 1.08996 * 109.47451 * 299.99803 * 12 11 10 43 43 H 1.09000 * 109.46884 * 60.00176 * 12 11 10 44 44 H 1.09003 * 115.54501 * 29.41730 * 13 12 11 45 45 H 1.09001 * 117.49618 * 359.97438 * 14 13 12 46 46 H 1.09002 * 117.49869 * 145.01980 * 14 13 12 47 47 H 1.08995 * 117.50275 * 214.98323 * 15 13 12 48 48 H 1.09006 * 117.49344 * 359.97438 * 15 13 12 49 49 H 1.08993 * 109.46754 * 172.17561 * 18 16 7 50 50 H 1.09000 * 109.46965 * 52.17874 * 18 16 7 51 51 H 1.09002 * 109.47267 * 53.61534 * 19 18 16 52 52 H 1.08996 * 109.47172 * 293.61293 * 19 18 16 53 53 H 0.96999 * 119.99710 * 0.02562 * 20 19 18 54 54 H 0.97000 * 120.00138 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7234 1.2481 5 6 3.5709 -0.6953 1.2658 6 6 4.1054 -1.4266 0.0303 7 7 3.5047 -0.8287 -1.1698 8 6 4.2812 -0.3850 -2.1780 9 8 3.7767 0.1573 -3.1384 10 6 5.7763 -0.5625 -2.1120 11 6 6.4157 0.0245 -3.3719 12 6 7.9336 -0.1553 -3.3045 13 6 8.5731 0.4312 -4.5647 14 6 9.3082 -0.5329 -5.4981 15 6 10.1012 0.4533 -4.6368 16 6 2.0414 -0.7234 -1.2498 17 1 1.6034 -1.7203 -1.2999 18 6 1.6518 0.0712 -2.4979 19 6 2.0910 1.5275 -2.3330 20 7 1.8568 2.2528 -3.5841 21 6 2.1750 3.5815 -3.6750 22 1 2.5982 4.0950 -2.8242 23 6 1.9536 4.2688 -4.8606 24 7 1.4373 3.6433 -5.8973 25 14 2.3946 6.0795 -4.9871 26 1 2.0690 6.5744 -6.3488 27 1 1.6188 6.8493 -3.9818 28 1 3.8470 6.2541 -4.7311 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3633 0.5128 -0.8906 32 1 1.6582 -0.2251 2.1388 33 1 1.6970 -1.7576 1.2347 34 1 3.9159 0.3386 1.2541 35 1 3.9335 -1.1897 2.1670 36 1 5.1896 -1.3245 -0.0141 37 1 3.8376 -2.4818 0.0861 38 1 6.1650 -0.0471 -1.2337 39 1 6.0134 -1.6243 -2.0447 40 1 6.0270 -0.4907 -4.2504 41 1 6.1785 1.0863 -3.4388 42 1 8.3219 0.3602 -2.4261 43 1 8.1711 -1.2170 -3.2374 44 1 8.0356 1.2623 -5.0214 45 1 9.3366 -1.5848 -5.2141 46 1 9.2547 -0.3358 -6.5688 47 1 10.5691 1.2986 -5.1412 48 1 10.6510 0.0503 -3.7862 49 1 0.5709 0.0306 -2.6317 50 1 2.1423 -0.3597 -3.3707 51 1 3.1523 1.5613 -2.0866 52 1 1.5169 1.9915 -1.5310 53 1 1.4757 1.7920 -4.3478 54 1 1.2823 4.1235 -6.7257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691727087.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:23 Heat of formation + Delta-G solvation = -12.535999 kcal Electronic energy + Delta-G solvation = -29155.560085 eV Core-core repulsion = 25513.880990 eV Total energy + Delta-G solvation = -3641.679095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.85660 -38.92828 -38.37404 -36.89411 -35.25774 -34.42506 -33.89893 -32.56691 -30.24324 -28.79893 -27.36239 -26.44037 -24.97163 -23.64148 -23.34138 -23.05247 -22.19550 -21.34300 -20.76029 -19.63192 -19.02069 -17.83794 -17.06410 -16.91815 -16.55015 -16.44785 -15.83857 -15.71760 -15.41285 -15.34152 -15.05981 -14.90598 -14.54172 -14.30244 -14.19318 -13.85046 -13.48243 -13.22117 -13.16379 -13.03717 -12.91055 -12.85741 -12.56979 -12.52109 -12.37971 -12.35741 -12.23476 -12.04771 -11.94819 -11.89084 -11.72575 -11.65771 -11.52916 -11.36319 -11.14528 -11.06487 -10.80035 -10.71556 -9.77598 -9.31735 -8.83585 -7.92140 -5.17880 1.39507 1.45036 1.51075 1.87786 2.16329 2.55600 2.92853 3.39361 3.56488 3.73734 3.82489 3.89155 3.94699 4.04397 4.07129 4.13036 4.17708 4.21179 4.25995 4.33380 4.40495 4.45080 4.59025 4.61856 4.66488 4.71445 4.73826 4.78167 4.79077 4.86850 4.88480 4.89933 4.92724 4.96836 4.98201 5.07459 5.10642 5.17253 5.25963 5.28253 5.28993 5.30210 5.36553 5.38508 5.43355 5.48481 5.51146 5.56150 5.59822 5.90072 6.30259 6.66070 7.34081 7.52501 8.18206 8.41544 9.32531 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.006168 B = 0.005536 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4538.455035 B = 5056.934769 C = 8865.617549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 H 0.050 0.950 4 C -0.108 4.108 5 C -0.133 4.133 6 C 0.103 3.897 7 N -0.611 5.611 8 C 0.479 3.521 9 O -0.540 6.540 10 C -0.125 4.125 11 C -0.097 4.097 12 C -0.073 4.073 13 C -0.176 4.176 14 C -0.181 4.181 15 C -0.171 4.171 16 C 0.165 3.835 17 H 0.085 0.915 18 C -0.117 4.117 19 C 0.188 3.812 20 N -0.735 5.735 21 C -0.235 4.235 22 H 0.064 0.936 23 C -0.082 4.082 24 N -0.973 5.973 25 Si 0.974 3.026 26 H -0.291 1.291 27 H -0.275 1.275 28 H -0.281 1.281 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.044 0.956 41 H 0.030 0.970 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.107 0.893 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.110 0.890 49 H 0.041 0.959 50 H 0.078 0.922 51 H 0.018 0.982 52 H -0.011 1.011 53 H 0.367 0.633 54 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.625 -17.377 17.218 27.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 H 0.068 0.932 4 C -0.145 4.145 5 C -0.171 4.171 6 C -0.018 4.018 7 N -0.346 5.346 8 C 0.268 3.732 9 O -0.418 6.418 10 C -0.164 4.164 11 C -0.135 4.135 12 C -0.110 4.110 13 C -0.195 4.195 14 C -0.218 4.218 15 C -0.208 4.208 16 C 0.061 3.939 17 H 0.103 0.897 18 C -0.155 4.155 19 C 0.062 3.938 20 N -0.376 5.376 21 C -0.367 4.367 22 H 0.081 0.919 23 C -0.273 4.273 24 N -0.625 5.625 25 Si 0.802 3.198 26 H -0.217 1.217 27 H -0.201 1.201 28 H -0.208 1.208 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.127 0.873 39 H 0.139 0.861 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.125 0.875 46 H 0.105 0.895 47 H 0.110 0.890 48 H 0.129 0.871 49 H 0.060 0.940 50 H 0.096 0.904 51 H 0.036 0.964 52 H 0.007 0.993 53 H 0.197 0.803 54 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.441 -16.940 16.791 26.901 hybrid contribution -0.441 1.440 -1.142 1.890 sum 11.999 -15.500 15.649 25.082 Atomic orbital electron populations 1.21770 0.94309 1.02496 1.01441 1.21586 0.96356 0.99337 0.95205 0.93179 1.21561 0.95732 1.01112 0.96124 1.21935 0.95698 1.00885 0.98612 1.22033 0.99399 0.97710 0.82657 1.48197 1.05836 1.61495 1.19063 1.21429 0.90885 0.78090 0.82780 1.90976 1.74464 1.41231 1.35138 1.21695 0.89690 1.04709 1.00313 1.21206 0.95577 0.99737 0.97006 1.21091 0.92606 1.01442 0.95839 1.22376 0.94998 1.02103 0.99997 1.23114 1.04420 0.97006 0.97267 1.23041 0.92866 1.01900 1.02997 1.21156 0.80157 0.98416 0.94121 0.89736 1.22140 0.98445 0.95621 0.99273 1.20776 0.95910 0.90575 0.86491 1.42449 1.75632 1.07545 1.11963 1.19526 1.32717 0.87583 0.96911 0.91851 1.25559 1.03226 1.02673 0.95840 1.69847 1.52452 1.37068 1.03128 0.85207 0.77955 0.80055 0.76579 1.21659 1.20121 1.20767 0.90894 0.91657 0.94702 0.91046 0.90178 0.93199 0.87771 0.87713 0.89341 0.87335 0.86117 0.93679 0.95063 0.90475 0.89775 0.90514 0.87452 0.89491 0.88982 0.87119 0.94033 0.90405 0.96440 0.99320 0.80266 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.97 71.99 0.65 -2.73 16 2 C -0.11 -2.60 1.93 -10.72 -0.02 -2.62 16 3 H 0.05 1.58 6.14 -2.39 -0.01 1.56 16 4 C -0.11 -1.72 5.17 30.62 0.16 -1.56 16 5 C -0.13 -1.79 6.08 30.67 0.19 -1.61 16 6 C 0.10 1.44 6.34 86.36 0.55 1.98 16 7 N -0.61 -15.09 2.93 -795.02 -2.33 -17.42 16 8 C 0.48 14.84 6.58 87.66 0.58 15.42 16 9 O -0.54 -23.57 9.42 -3.04 -0.03 -23.60 16 10 C -0.12 -2.68 4.07 29.85 0.12 -2.56 16 11 C -0.10 -2.67 4.46 30.59 0.14 -2.53 16 12 C -0.07 -1.44 5.50 30.60 0.17 -1.27 16 13 C -0.18 -4.04 5.73 -10.79 -0.06 -4.10 16 14 C -0.18 -3.49 10.18 30.62 0.31 -3.18 16 15 C -0.17 -3.07 10.25 30.62 0.31 -2.75 16 16 C 0.17 4.60 2.67 44.98 0.12 4.72 16 17 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 18 C -0.12 -4.66 4.16 30.60 0.13 -4.53 16 19 C 0.19 9.11 4.24 86.38 0.37 9.48 16 20 N -0.74 -44.09 5.53 -343.44 -1.90 -45.99 16 21 C -0.24 -14.96 9.99 84.04 0.84 -14.12 16 22 H 0.06 3.92 7.83 -2.91 -0.02 3.90 16 23 C -0.08 -5.20 5.50 84.86 0.47 -4.73 16 24 N -0.97 -65.64 13.06 21.65 0.28 -65.36 16 25 Si 0.97 50.52 29.55 68.60 2.03 52.55 16 26 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16 27 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 28 H -0.28 -14.14 7.11 99.48 0.71 -13.43 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.03 1.03 6.80 -2.39 -0.02 1.01 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.10 0.79 8.14 -2.39 -0.02 0.78 16 36 H 0.10 1.01 5.95 -2.39 -0.01 1.00 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.11 1.84 7.56 -2.38 -0.02 1.83 16 39 H 0.12 1.73 8.06 -2.39 -0.02 1.71 16 40 H 0.04 1.44 8.10 -2.38 -0.02 1.42 16 41 H 0.03 1.11 8.10 -2.39 -0.02 1.09 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.08 1.28 7.87 -2.39 -0.02 1.26 16 44 H 0.08 2.20 8.08 -2.39 -0.02 2.18 16 45 H 0.11 1.72 8.03 -2.39 -0.02 1.71 16 46 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 49 H 0.04 1.65 7.03 -2.39 -0.02 1.64 16 50 H 0.08 3.54 5.72 -22.44 -0.13 3.41 16 51 H 0.02 0.90 5.33 -2.39 -0.01 0.89 16 52 H -0.01 -0.52 6.61 -2.39 -0.02 -0.54 16 53 H 0.37 23.61 7.67 -92.71 -0.71 22.90 16 54 H 0.25 16.17 8.31 -92.71 -0.77 15.40 16 Total: -1.00 -82.30 404.53 3.09 -79.21 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: 0.03 Total: 37.31 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 5.00 Total: -16.69 kcal Atomic # 7 Polarization: -124.82 SS G_CDS: -3.95 Total: -128.77 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.03 Total: -23.60 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 2.03 Total: 52.55 kcal Total: -82.30 3.09 -79.21 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691727087.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.673 kcal (2) G-P(sol) polarization free energy of solvation -82.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds