Wall clock time and date at job start Tue Mar 31 2020 15:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.52161 * 2 1 4 4 C 1.53043 * 109.49534 * 120.07666 * 2 1 3 5 5 C 1.53047 * 109.53496 * 58.59080 * 4 2 1 6 6 C 1.53188 * 109.31576 * 61.36249 * 5 4 2 7 7 N 1.46926 * 108.77475 * 305.36825 * 6 5 4 8 8 C 1.34779 * 120.62423 * 233.58649 * 7 6 5 9 9 O 1.21282 * 119.99617 * 185.57764 * 8 7 6 10 10 C 1.50694 * 120.00470 * 5.57906 * 8 7 6 11 11 C 1.53001 * 109.47415 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47335 * 179.97438 * 11 10 8 13 13 C 1.52995 * 109.47431 * 179.97438 * 12 11 10 14 14 C 1.52995 * 117.50190 * 243.74894 * 13 12 11 15 15 C 1.52994 * 117.50000 * 175.08601 * 13 12 11 16 16 C 1.46924 * 118.74222 * 53.60429 * 7 6 5 17 17 H 1.08993 * 109.58560 * 66.18254 * 16 7 6 18 18 C 1.52997 * 109.58793 * 186.60797 * 16 7 6 19 19 C 1.52994 * 109.47303 * 178.00108 * 18 16 7 20 20 N 1.46507 * 109.47347 * 184.85386 * 19 18 16 21 21 C 1.36934 * 120.00209 * 180.02562 * 20 19 18 22 22 H 1.08003 * 119.99830 * 359.97438 * 21 20 19 23 23 C 1.38809 * 120.00149 * 179.97438 * 21 20 19 24 24 N 1.31627 * 119.99955 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00144 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47256 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47147 * 119.99828 * 25 23 21 28 28 H 1.48498 * 109.47067 * 239.99746 * 25 23 21 29 29 H 1.09006 * 109.47647 * 299.91960 * 1 2 3 30 30 H 1.09001 * 109.47339 * 59.92418 * 1 2 3 31 31 H 1.09000 * 109.47434 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46495 * 298.56767 * 4 2 1 33 33 H 1.08998 * 109.44662 * 178.59687 * 4 2 1 34 34 H 1.09000 * 109.49116 * 181.31416 * 5 4 2 35 35 H 1.08998 * 109.49402 * 301.40793 * 5 4 2 36 36 H 1.09010 * 109.58459 * 65.14875 * 6 5 4 37 37 H 1.08992 * 109.58959 * 185.57386 * 6 5 4 38 38 H 1.09004 * 109.47000 * 299.99939 * 10 8 7 39 39 H 1.08996 * 109.47192 * 59.99619 * 10 8 7 40 40 H 1.09004 * 109.46941 * 299.99919 * 11 10 8 41 41 H 1.08996 * 109.47297 * 59.99628 * 11 10 8 42 42 H 1.09004 * 109.47196 * 299.99954 * 12 11 10 43 43 H 1.09005 * 109.46935 * 59.99628 * 12 11 10 44 44 H 1.09003 * 115.54399 * 29.41760 * 13 12 11 45 45 H 1.08995 * 117.49845 * 359.97438 * 14 13 12 46 46 H 1.09004 * 117.49649 * 145.01974 * 14 13 12 47 47 H 1.09006 * 117.49591 * 214.98108 * 15 13 12 48 48 H 1.08998 * 117.50249 * 359.97438 * 15 13 12 49 49 H 1.09011 * 109.47197 * 298.00336 * 18 16 7 50 50 H 1.09002 * 109.47565 * 57.99432 * 18 16 7 51 51 H 1.09003 * 109.47191 * 304.84683 * 19 18 16 52 52 H 1.09002 * 109.47532 * 64.85309 * 19 18 16 53 53 H 0.97000 * 119.99409 * 359.97438 * 20 19 18 54 54 H 0.96996 * 120.00110 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0407 -0.7230 1.2484 5 6 1.5029 -2.1558 1.2661 6 6 2.0139 -2.9040 0.0309 7 7 1.6516 -2.1382 -1.1695 8 6 0.9748 -2.7222 -2.1782 9 8 0.7698 -2.1103 -3.2050 10 6 0.4729 -4.1353 -2.0301 11 6 -0.2554 -4.5545 -3.3087 12 6 -0.7645 -5.9895 -3.1586 13 6 -1.4933 -6.4085 -4.4369 14 6 -2.9869 -6.7218 -4.3282 15 6 -1.9793 -7.8561 -4.5309 16 6 2.0413 -0.7238 -1.2495 17 1 3.1274 -0.6463 -1.2979 18 6 1.4229 -0.0912 -2.4978 19 6 1.7892 1.3932 -2.5521 20 7 1.1033 2.0245 -3.6823 21 6 1.2806 3.3592 -3.9320 22 1 1.9258 3.9466 -3.2955 23 6 0.6311 3.9572 -5.0031 24 7 -0.1549 3.2412 -5.7791 25 14 0.8724 5.7780 -5.3433 26 1 1.7977 6.3519 -4.3336 27 1 1.4492 5.9559 -6.7001 28 1 -0.4373 6.4736 -5.2672 29 1 -0.3634 0.5126 0.8907 30 1 -0.3634 0.5150 -0.8893 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6987 -0.1958 2.1389 33 1 3.1304 -0.7444 1.2351 34 1 1.8480 -2.6627 2.1672 35 1 0.4132 -2.1354 1.2541 36 1 3.0980 -3.0043 0.0869 37 1 1.5554 -3.8918 -0.0136 38 1 1.3160 -4.8041 -1.8568 39 1 -0.2140 -4.1903 -1.1856 40 1 -1.0986 -3.8858 -3.4824 41 1 0.4318 -4.4996 -4.1529 42 1 0.0789 -6.6580 -2.9851 43 1 -1.4516 -6.0448 -2.3142 44 1 -1.1439 -5.9343 -5.3541 45 1 -3.4502 -6.6298 -3.3459 46 1 -3.6201 -6.4541 -5.1741 47 1 -1.9501 -8.3343 -5.5100 48 1 -1.7795 -8.5102 -3.6822 49 1 1.8055 -0.5927 -3.3869 50 1 0.3387 -0.1968 -2.4596 51 1 1.4827 1.8773 -1.6248 52 1 2.8670 1.4972 -2.6772 53 1 0.5241 1.4968 -4.2541 54 1 -0.6084 3.6590 -6.5278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691727088.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:27 Heat of formation + Delta-G solvation = -29.336551 kcal Electronic energy + Delta-G solvation = -28484.337780 eV Core-core repulsion = 24841.930158 eV Total energy + Delta-G solvation = -3642.407622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.79240 -39.08674 -38.42378 -37.01139 -35.23059 -34.35084 -34.08111 -32.52010 -30.07247 -29.01052 -27.65094 -26.30366 -25.16873 -24.11898 -23.28438 -22.98437 -22.05910 -21.32457 -20.71449 -19.35689 -19.10546 -17.73899 -17.18074 -16.77636 -16.57144 -16.35175 -16.28893 -15.76508 -15.33435 -15.23160 -15.12283 -14.95382 -14.84610 -14.59669 -14.10475 -13.97080 -13.55698 -13.30927 -13.12199 -13.04554 -12.92395 -12.88606 -12.58969 -12.53038 -12.36602 -12.31276 -12.29335 -12.06543 -11.95427 -11.83977 -11.77922 -11.72934 -11.67254 -11.30866 -11.20013 -11.05824 -10.93033 -10.70970 -9.89922 -9.44155 -9.02261 -7.96431 -5.27150 1.42818 1.45978 1.56115 1.76542 2.07852 2.53862 2.93696 3.35680 3.48559 3.72615 3.81295 3.83232 3.94367 4.04497 4.07825 4.08441 4.15419 4.20647 4.25139 4.26739 4.41375 4.42261 4.48620 4.59956 4.63108 4.68339 4.74321 4.76788 4.80252 4.80343 4.82945 4.85690 4.89651 4.92742 4.97878 5.01032 5.10972 5.14044 5.23688 5.26528 5.27285 5.28402 5.33754 5.37552 5.41658 5.44572 5.50723 5.54395 5.58491 5.80699 6.24665 6.58873 7.28883 7.37995 8.06129 8.30787 9.27976 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.009469 B = 0.003211 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.313926 B = 8717.075985 C =11193.407380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 H 0.072 0.928 4 C -0.110 4.110 5 C -0.133 4.133 6 C 0.101 3.899 7 N -0.607 5.607 8 C 0.495 3.505 9 O -0.576 6.576 10 C -0.128 4.128 11 C -0.099 4.099 12 C -0.076 4.076 13 C -0.170 4.170 14 C -0.189 4.189 15 C -0.172 4.172 16 C 0.161 3.839 17 H 0.073 0.927 18 C -0.093 4.093 19 C 0.147 3.853 20 N -0.747 5.747 21 C -0.246 4.246 22 H 0.078 0.922 23 C -0.083 4.083 24 N -0.974 5.974 25 Si 0.981 3.019 26 H -0.263 1.263 27 H -0.292 1.292 28 H -0.290 1.290 29 H 0.063 0.937 30 H 0.024 0.976 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.115 0.885 40 H 0.041 0.959 41 H 0.047 0.953 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.094 0.906 48 H 0.107 0.893 49 H 0.058 0.942 50 H 0.048 0.952 51 H 0.027 0.973 52 H 0.012 0.988 53 H 0.369 0.631 54 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.357 -24.820 18.334 30.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.121 4.121 3 H 0.090 0.910 4 C -0.147 4.147 5 C -0.171 4.171 6 C -0.020 4.020 7 N -0.340 5.340 8 C 0.285 3.715 9 O -0.456 6.456 10 C -0.167 4.167 11 C -0.138 4.138 12 C -0.113 4.113 13 C -0.188 4.188 14 C -0.226 4.226 15 C -0.209 4.209 16 C 0.057 3.943 17 H 0.091 0.909 18 C -0.131 4.131 19 C 0.020 3.980 20 N -0.389 5.389 21 C -0.377 4.377 22 H 0.096 0.904 23 C -0.275 4.275 24 N -0.624 5.624 25 Si 0.809 3.191 26 H -0.187 1.187 27 H -0.219 1.219 28 H -0.217 1.217 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.130 0.870 38 H 0.139 0.861 39 H 0.133 0.867 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.119 0.881 46 H 0.106 0.894 47 H 0.113 0.887 48 H 0.126 0.874 49 H 0.077 0.923 50 H 0.067 0.933 51 H 0.044 0.956 52 H 0.030 0.970 53 H 0.200 0.800 54 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.348 -24.349 17.872 30.295 hybrid contribution -0.399 1.352 -1.301 1.918 sum 1.949 -22.997 16.571 28.413 Atomic orbital electron populations 1.21792 0.95622 1.01496 1.00702 1.21530 0.96084 0.99566 0.94954 0.90965 1.21544 1.00979 0.96120 0.96083 1.21972 1.01429 0.95379 0.98315 1.22097 1.01529 0.95721 0.82686 1.48267 1.56081 1.10450 1.19207 1.21555 0.77275 0.90125 0.82558 1.90843 1.58396 1.65636 1.30701 1.21753 1.02752 0.91503 1.00708 1.21250 0.99218 0.96629 0.96658 1.21115 1.00055 0.94654 0.95494 1.22398 0.96972 0.99430 1.00036 1.23119 0.92132 1.04047 1.03338 1.23045 1.03284 0.90898 1.03654 1.21060 0.98144 0.80667 0.94392 0.90901 1.21934 1.00305 0.92933 0.97911 1.21011 0.94172 0.93050 0.89751 1.42637 1.55783 1.07408 1.33099 1.19731 1.22085 0.86733 1.09182 0.90438 1.25725 1.00293 1.03055 0.98384 1.69890 1.35608 1.36842 1.20109 0.84959 0.77248 0.79290 0.77571 1.18677 1.21860 1.21742 0.91818 0.95671 0.92182 0.90717 0.90874 0.87900 0.91625 0.89943 0.86973 0.86087 0.86663 0.93986 0.93420 0.89890 0.90528 0.89450 0.88063 0.89447 0.88708 0.87418 0.92304 0.93311 0.95553 0.97033 0.80030 0.94019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 8.19 71.98 0.59 -3.16 16 2 C -0.10 -2.49 2.25 -10.72 -0.02 -2.51 16 3 H 0.07 1.97 6.63 -2.39 -0.02 1.95 16 4 C -0.11 -1.69 5.43 30.62 0.17 -1.52 16 5 C -0.13 -1.46 5.74 30.67 0.18 -1.28 16 6 C 0.10 1.20 6.35 86.36 0.55 1.75 16 7 N -0.61 -13.78 2.41 -795.06 -1.92 -15.70 16 8 C 0.49 13.47 7.53 87.65 0.66 14.13 16 9 O -0.58 -22.78 11.54 -3.04 -0.04 -22.81 16 10 C -0.13 -2.12 4.05 29.85 0.12 -2.00 16 11 C -0.10 -2.09 4.46 30.59 0.14 -1.95 16 12 C -0.08 -1.11 5.50 30.59 0.17 -0.94 16 13 C -0.17 -2.96 5.73 -10.80 -0.06 -3.02 16 14 C -0.19 -3.03 10.18 30.62 0.31 -2.72 16 15 C -0.17 -2.37 10.25 30.62 0.31 -2.05 16 16 C 0.16 4.60 2.74 44.97 0.12 4.73 16 17 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 18 C -0.09 -3.77 2.75 30.59 0.08 -3.69 16 19 C 0.15 6.80 5.97 86.38 0.52 7.32 16 20 N -0.75 -43.70 5.60 -343.44 -1.92 -45.62 16 21 C -0.25 -15.05 9.99 84.03 0.84 -14.21 16 22 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 23 C -0.08 -5.16 5.50 84.86 0.47 -4.69 16 24 N -0.97 -64.83 13.06 21.65 0.28 -64.54 16 25 Si 0.98 49.08 29.55 68.60 2.03 51.11 16 26 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 27 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 28 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 29 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.02 0.88 6.35 -2.39 -0.02 0.86 16 31 H 0.06 1.49 5.97 -2.39 -0.01 1.47 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.07 0.84 6.33 -2.39 -0.02 0.82 16 36 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.11 0.71 5.93 -2.39 -0.01 0.70 16 38 H 0.12 1.25 7.72 -2.38 -0.02 1.23 16 39 H 0.12 1.34 7.92 -2.39 -0.02 1.32 16 40 H 0.04 1.13 8.10 -2.38 -0.02 1.11 16 41 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 42 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.08 0.92 7.87 -2.38 -0.02 0.91 16 44 H 0.09 1.81 8.08 -2.39 -0.02 1.79 16 45 H 0.10 1.43 8.03 -2.39 -0.02 1.42 16 46 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 47 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 48 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.06 2.75 6.25 -2.38 -0.01 2.74 16 50 H 0.05 2.21 5.53 -2.39 -0.01 2.20 16 51 H 0.03 1.18 6.28 -2.39 -0.01 1.17 16 52 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 53 H 0.37 23.54 7.67 -92.71 -0.71 22.83 16 54 H 0.25 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -80.58 404.56 3.72 -76.85 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: 0.15 Total: 36.55 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 5.13 Total: -15.83 kcal Atomic # 7 Polarization: -122.31 SS G_CDS: -3.56 Total: -125.86 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.04 Total: -22.81 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 2.03 Total: 51.11 kcal Total: -80.58 3.72 -76.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691727088.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.517 kcal (2) G-P(sol) polarization free energy of solvation -80.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds