Wall clock time and date at job start Tue Mar 31 2020 15:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.49680 * 2 1 4 4 C 1.53040 * 109.51887 * 239.92349 * 2 1 3 5 5 C 1.53049 * 109.53584 * 178.66960 * 4 2 1 6 6 C 1.53189 * 109.31478 * 61.36053 * 5 4 2 7 7 N 1.46927 * 108.77535 * 305.36835 * 6 5 4 8 8 C 1.34779 * 120.62687 * 233.88182 * 7 6 5 9 9 O 1.21279 * 119.99653 * 175.99130 * 8 7 6 10 10 C 1.50694 * 120.00418 * 355.99640 * 8 7 6 11 11 C 1.52997 * 109.47522 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47206 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47191 * 179.97438 * 12 11 10 14 14 C 1.52992 * 117.50119 * 243.61960 * 13 12 11 15 15 C 1.52993 * 60.00215 * 252.50867 * 14 13 12 16 16 C 1.46929 * 118.74218 * 53.60793 * 7 6 5 17 17 H 1.08999 * 109.58423 * 66.17558 * 16 7 6 18 18 C 1.52995 * 109.58585 * 186.60756 * 16 7 6 19 19 C 1.53001 * 109.47655 * 67.90689 * 18 16 7 20 20 N 1.46498 * 109.47239 * 186.41790 * 19 18 16 21 21 C 1.36930 * 119.99794 * 179.97438 * 20 19 18 22 22 H 1.08003 * 120.00548 * 359.97438 * 21 20 19 23 23 C 1.38817 * 119.99993 * 180.02562 * 21 20 19 24 24 N 1.31619 * 120.00207 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99820 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.46565 * 90.00465 * 25 23 21 27 27 H 1.48498 * 109.47157 * 209.99935 * 25 23 21 28 28 H 1.48498 * 109.47183 * 330.00442 * 25 23 21 29 29 H 1.09001 * 109.46789 * 299.93468 * 1 2 3 30 30 H 1.09001 * 109.47480 * 59.93227 * 1 2 3 31 31 H 1.08994 * 109.47811 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.45954 * 298.68083 * 4 2 1 33 33 H 1.08998 * 109.46686 * 58.66097 * 4 2 1 34 34 H 1.09002 * 109.49627 * 181.31340 * 5 4 2 35 35 H 1.09004 * 109.49042 * 301.40725 * 5 4 2 36 36 H 1.09000 * 109.58600 * 185.58045 * 6 5 4 37 37 H 1.08999 * 109.58674 * 65.15364 * 6 5 4 38 38 H 1.09003 * 109.46940 * 299.99860 * 10 8 7 39 39 H 1.09002 * 109.47385 * 59.98984 * 10 8 7 40 40 H 1.09003 * 109.46776 * 299.99810 * 11 10 8 41 41 H 1.08996 * 109.47341 * 59.99165 * 11 10 8 42 42 H 1.09003 * 109.47096 * 299.99612 * 12 11 10 43 43 H 1.09003 * 109.47532 * 59.99715 * 12 11 10 44 44 H 1.09006 * 115.54751 * 29.33004 * 13 12 11 45 45 H 1.08994 * 117.50018 * 0.02562 * 14 13 12 46 46 H 1.09009 * 117.50055 * 145.02106 * 14 13 12 47 47 H 1.08999 * 117.49999 * 252.51073 * 15 14 13 48 48 H 1.09005 * 117.50151 * 107.48862 * 15 14 13 49 49 H 1.09008 * 109.47011 * 187.90613 * 18 16 7 50 50 H 1.08999 * 109.46914 * 307.90038 * 18 16 7 51 51 H 1.08997 * 109.46520 * 306.42225 * 19 18 16 52 52 H 1.09005 * 109.46960 * 66.41602 * 19 18 16 53 53 H 0.97002 * 119.99658 * 359.97438 * 20 19 18 54 54 H 0.96996 * 120.00494 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0413 -0.7229 -1.2482 5 6 3.5714 -0.6942 -1.2655 6 6 4.1059 -1.4255 -0.0301 7 7 3.5047 -0.8282 1.1700 8 6 4.2810 -0.3796 2.1763 9 8 3.7774 0.1770 3.1289 10 6 5.7748 -0.5696 2.1178 11 6 6.4142 0.0248 3.3742 12 6 7.9308 -0.1676 3.3145 13 6 8.5703 0.4275 4.5706 14 6 9.5240 1.6094 4.3857 15 6 10.0762 0.2318 4.7572 16 6 2.0413 -0.7235 1.2498 17 1 1.6057 -1.7215 1.2981 18 6 1.6512 0.0708 2.4978 19 6 2.0879 1.5278 2.3325 20 7 1.8539 2.2527 3.5838 21 6 2.1711 3.5817 3.6747 22 1 2.5941 4.0954 2.8240 23 6 1.9499 4.2686 4.8606 24 7 2.2542 5.5461 4.9478 25 14 1.2189 3.3800 6.3322 26 1 2.3124 2.8072 7.1576 27 1 0.4325 4.3390 7.1489 28 1 0.3309 2.2875 5.8598 29 1 -0.3633 0.5128 0.8906 30 1 -0.3634 0.5149 -0.8894 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6977 -1.7573 -1.2352 33 1 1.6589 -0.2244 -2.1389 34 1 3.9344 -1.1888 -2.1665 35 1 3.9160 0.3399 -1.2536 36 1 5.1901 -1.3229 0.0146 37 1 3.8386 -2.4808 -0.0861 38 1 6.0038 -1.6339 2.0629 39 1 6.1708 -0.0669 1.2354 40 1 6.1852 1.0891 3.4296 41 1 6.0182 -0.4783 4.2563 42 1 8.1602 -1.2317 3.2589 43 1 8.3266 0.3360 2.4324 44 1 7.9470 0.4183 5.4648 45 1 9.6955 1.9634 3.3693 46 1 9.5282 2.3784 5.1584 47 1 10.4437 0.0944 5.7741 48 1 10.6114 -0.3209 3.9850 49 1 0.5702 0.0285 2.6323 50 1 2.1428 -0.3592 3.3705 51 1 3.1488 1.5631 2.0849 52 1 1.5122 1.9909 1.5311 53 1 1.4743 1.7913 4.3480 54 1 2.0993 6.0262 5.7762 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691727089.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:31 Heat of formation + Delta-G solvation = -9.791834 kcal Electronic energy + Delta-G solvation = -29248.578652 eV Core-core repulsion = 25607.018553 eV Total energy + Delta-G solvation = -3641.560099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.88273 -38.93776 -38.38528 -37.05287 -35.28684 -34.43220 -33.95523 -32.91388 -30.41855 -28.92172 -27.39910 -26.45201 -24.78188 -23.55198 -23.34529 -23.04881 -22.24159 -21.35272 -20.84055 -19.89437 -19.27316 -17.86615 -17.09284 -16.88817 -16.64024 -16.41378 -15.88304 -15.81198 -15.57393 -15.16934 -15.02455 -14.86503 -14.79220 -14.33443 -14.27575 -13.84519 -13.64267 -13.35387 -13.29102 -13.03408 -12.99601 -12.95536 -12.55947 -12.49007 -12.40463 -12.36309 -12.15543 -12.11251 -11.92514 -11.87940 -11.78387 -11.70174 -11.53850 -11.36426 -11.16435 -11.07306 -10.86379 -10.71962 -9.81827 -9.37130 -9.08509 -8.03837 -5.32023 1.30617 1.35845 1.42908 1.85031 2.15528 2.46394 2.92212 3.27539 3.52435 3.69445 3.79696 3.85702 3.88406 4.01605 4.02944 4.07984 4.15575 4.20127 4.25043 4.31649 4.39144 4.41840 4.55080 4.55981 4.64884 4.69008 4.74173 4.77224 4.78610 4.86689 4.87469 4.88957 4.92425 4.95100 4.97024 5.04865 5.09681 5.16473 5.24911 5.26712 5.27394 5.28864 5.38011 5.38630 5.44799 5.48811 5.52972 5.58615 5.72456 5.86432 6.22372 6.63778 7.09024 7.48790 7.90685 8.10259 9.18994 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.006533 B = 0.005666 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4285.132108 B = 4940.330209 C = 8514.286216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 H 0.047 0.953 4 C -0.108 4.108 5 C -0.135 4.135 6 C 0.104 3.896 7 N -0.612 5.612 8 C 0.481 3.519 9 O -0.542 6.542 10 C -0.126 4.126 11 C -0.098 4.098 12 C -0.074 4.074 13 C -0.171 4.171 14 C -0.195 4.195 15 C -0.163 4.163 16 C 0.165 3.835 17 H 0.091 0.909 18 C -0.121 4.121 19 C 0.188 3.812 20 N -0.750 5.750 21 C -0.220 4.220 22 H 0.046 0.954 23 C -0.067 4.067 24 N -0.988 5.988 25 Si 0.958 3.042 26 H -0.285 1.285 27 H -0.289 1.289 28 H -0.258 1.258 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.046 0.954 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.123 0.877 39 H 0.105 0.895 40 H 0.030 0.970 41 H 0.049 0.951 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.111 0.889 49 H 0.050 0.950 50 H 0.084 0.916 51 H 0.022 0.978 52 H -0.007 1.007 53 H 0.360 0.640 54 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.694 -23.632 -14.095 29.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.127 4.127 3 H 0.066 0.934 4 C -0.145 4.145 5 C -0.173 4.173 6 C -0.017 4.017 7 N -0.346 5.346 8 C 0.271 3.729 9 O -0.420 6.420 10 C -0.165 4.165 11 C -0.136 4.136 12 C -0.111 4.111 13 C -0.190 4.190 14 C -0.232 4.232 15 C -0.200 4.200 16 C 0.061 3.939 17 H 0.108 0.892 18 C -0.159 4.159 19 C 0.062 3.938 20 N -0.394 5.394 21 C -0.352 4.352 22 H 0.064 0.936 23 C -0.258 4.258 24 N -0.639 5.639 25 Si 0.786 3.214 26 H -0.211 1.211 27 H -0.215 1.215 28 H -0.183 1.183 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.065 0.935 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.141 0.859 39 H 0.123 0.877 40 H 0.049 0.951 41 H 0.068 0.932 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.117 0.883 46 H 0.101 0.899 47 H 0.115 0.885 48 H 0.129 0.871 49 H 0.068 0.932 50 H 0.102 0.898 51 H 0.040 0.960 52 H 0.011 0.989 53 H 0.192 0.808 54 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.511 -23.165 -13.694 28.541 hybrid contribution -0.631 0.844 1.370 1.728 sum 8.880 -22.321 -12.324 26.999 Atomic orbital electron populations 1.21769 0.94129 1.02602 1.01518 1.21607 0.96512 0.99278 0.95342 0.93410 1.21560 0.95610 1.01191 0.96168 1.21944 0.95833 1.00768 0.98729 1.22022 0.99338 0.97778 0.82580 1.48207 1.05939 1.61344 1.19101 1.21362 0.90778 0.78038 0.82734 1.90924 1.74498 1.40827 1.35745 1.21696 0.89840 1.04710 1.00289 1.21219 0.95483 0.99752 0.97176 1.21102 0.92812 1.01638 0.95570 1.22398 0.92938 1.03345 1.00274 1.23093 1.05124 0.92108 1.02904 1.23028 0.94919 0.98796 1.03267 1.21181 0.80046 0.98654 0.94013 0.89162 1.22201 0.99043 0.95080 0.99564 1.20818 0.96479 0.90588 0.85876 1.42633 1.76881 1.07188 1.12709 1.19003 1.32454 0.86207 0.97516 0.93605 1.25431 1.03171 0.96522 1.00662 1.69883 1.56821 1.09690 1.27546 0.85350 0.78462 0.77972 0.79624 1.21145 1.21506 1.18270 0.94363 0.91941 0.90693 0.89976 0.91286 0.87875 0.93474 0.87851 0.89089 0.85944 0.87657 0.95150 0.93179 0.89406 0.90946 0.89733 0.88272 0.89856 0.88518 0.87097 0.93155 0.89758 0.95992 0.98891 0.80831 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.97 71.98 0.65 -2.49 16 2 C -0.11 -2.52 1.93 -10.72 -0.02 -2.54 16 3 H 0.05 1.48 6.14 -2.38 -0.01 1.46 16 4 C -0.11 -1.65 5.17 30.62 0.16 -1.49 16 5 C -0.13 -1.78 6.08 30.67 0.19 -1.59 16 6 C 0.10 1.35 6.33 86.36 0.55 1.89 16 7 N -0.61 -14.04 2.93 -795.04 -2.33 -16.37 16 8 C 0.48 14.01 6.60 87.65 0.58 14.58 16 9 O -0.54 -21.97 9.35 -3.03 -0.03 -22.00 16 10 C -0.13 -2.57 4.08 29.85 0.12 -2.45 16 11 C -0.10 -2.58 4.46 30.59 0.14 -2.45 16 12 C -0.07 -1.43 5.50 30.59 0.17 -1.26 16 13 C -0.17 -3.85 5.74 -10.80 -0.06 -3.91 16 14 C -0.20 -4.25 10.18 30.59 0.31 -3.94 16 15 C -0.16 -2.87 10.25 30.59 0.31 -2.55 16 16 C 0.16 4.18 2.67 44.97 0.12 4.30 16 17 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 18 C -0.12 -4.35 4.16 30.59 0.13 -4.22 16 19 C 0.19 8.64 4.23 86.38 0.37 9.01 16 20 N -0.75 -41.63 5.33 -343.45 -1.83 -43.46 16 21 C -0.22 -14.29 10.47 84.04 0.88 -13.41 16 22 H 0.05 3.25 8.06 -2.91 -0.02 3.22 16 23 C -0.07 -4.38 5.50 84.86 0.47 -3.92 16 24 N -0.99 -68.36 13.97 21.65 0.30 -68.05 16 25 Si 0.96 51.25 27.74 68.60 1.90 53.15 16 26 H -0.28 -15.11 7.11 99.48 0.71 -14.40 16 27 H -0.29 -15.08 7.11 99.48 0.71 -14.37 16 28 H -0.26 -12.76 6.52 99.48 0.65 -12.11 16 29 H 0.04 1.04 6.80 -2.39 -0.02 1.02 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.10 0.94 5.95 -2.39 -0.01 0.93 16 37 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.12 1.60 8.08 -2.39 -0.02 1.58 16 39 H 0.11 1.76 7.53 -2.39 -0.02 1.74 16 40 H 0.03 1.06 8.10 -2.39 -0.02 1.04 16 41 H 0.05 1.48 8.10 -2.39 -0.02 1.46 16 42 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.07 1.26 7.87 -2.39 -0.02 1.24 16 44 H 0.08 2.22 8.08 -2.38 -0.02 2.20 16 45 H 0.10 2.00 8.03 -2.39 -0.02 1.99 16 46 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 47 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 49 H 0.05 1.75 7.04 -2.38 -0.02 1.73 16 50 H 0.08 3.37 5.75 -19.46 -0.11 3.26 16 51 H 0.02 1.10 5.31 -2.39 -0.01 1.08 16 52 H -0.01 -0.31 6.62 -2.38 -0.02 -0.33 16 53 H 0.36 19.48 5.53 -92.71 -0.51 18.97 16 54 H 0.26 16.82 8.31 -92.71 -0.77 16.05 16 Total: -1.00 -83.77 401.36 3.25 -80.52 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: 0.19 Total: 32.65 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 5.04 Total: -16.43 kcal Atomic # 7 Polarization: -124.03 SS G_CDS: -3.86 Total: -127.89 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.03 Total: -22.00 kcal Atomic # 14 Polarization: 51.25 SS G_CDS: 1.90 Total: 53.15 kcal Total: -83.77 3.25 -80.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691727089.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.732 kcal (2) G-P(sol) polarization free energy of solvation -83.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds